Literature DB >> 21578942

3-[(E)-(7-Chloro-4-quinol-yl)hydrazono-meth-yl]benzonitrile monohydrate.

Marcelle L de Ferreira, Marcus V N de Souza, R Alan Howie, Edward R T Tiekink, James L Wardell, Solange M S V Wardell.   

Abstract

The title monohydrate, C(17)H(11)ClN(4)·H(2)O, features an essentially planar organic mol-ecule, as seen in the dihedral angle of 2.42 (8)° formed between the n class="Chemical">quinoline and benzene planes. The conformation about the imine bond is E, and the N-H group is oriented towards the quinoline residue. The major feature of the crystal packing is the formation of supra-molecular chains along [100], whereby the water mol-ecule accepts one N-H⋯O hydrogen bond and makes two O-H⋯N hydrogen bonds. A C-H⋯O link is also present.

Entities:  

Year:  2009        PMID: 21578942      PMCID: PMC2971809          DOI: 10.1107/S1600536809050120

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on the pharmacological activity of quinoline derivatives, see: Elslager et al. (1969 ▶); Font et al. (1997 ▶); Kaminsky & Meltzer (1968 ▶); Musiol et al. (2006 ▶); Nakamura et al. (1999 ▶); Palmer et al. (1993 ▶); Ridley (2002 ▶); Sloboda et al. (1991 ▶); Tanenbaum & Tuffanelli (1980 ▶); Warshakoon et al. (2006 ▶). For recent studies into n class="Chemical">quinoline-based anti-malarials, see: Andrade et al. (2007 ▶); Cunico et al. (2006 ▶); da Silva et al. (2003 ▶); de Souza et al. (2005 ▶). For a related crystallographic study on neutral species related to the title compound, see: Kaiser et al. (2009 ▶).

Experimental

Crystal data

C17H11ClN4·H2O M = 324.76 Triclinic, a = 8.7406 (2) Å b = 9.8587 (3) Å c = 10.2301 (2) Å α = 110.8897 (15)° β = 93.4341 (16)° γ = 110.6766 (15)° V = 752.93 (3) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 120 K 0.12 × 0.09 × 0.04 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.901, T max = 0.990 14600 measured reflections 3425 independent reflections 2902 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.109 S = 1.10 3425 reflections 217 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.25 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809050120/hb5242sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050120/hb5242Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H11ClN4·H2OZ = 2
Mr = 324.76F(000) = 336
Triclinic, P1Dx = 1.432 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.7406 (2) ÅCell parameters from 11816 reflections
b = 9.8587 (3) Åθ = 2.9–27.5°
c = 10.2301 (2) ŵ = 0.26 mm1
α = 110.8897 (15)°T = 120 K
β = 93.4341 (16)°Plate, yellow
γ = 110.6766 (15)°0.12 × 0.09 × 0.04 mm
V = 752.93 (3) Å3
Nonius KappaCCD area-detector diffractometer3425 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode2902 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.046
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.0°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −12→12
Tmin = 0.901, Tmax = 0.990l = −13→13
14600 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.023P)2 + 0.7336P] where P = (Fo2 + 2Fc2)/3
3425 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.19140 (6)0.44486 (6)−0.08216 (5)0.02503 (14)
N10.0883 (2)0.39813 (19)0.38535 (17)0.0215 (3)
N20.49296 (19)0.27107 (18)0.43632 (17)0.0181 (3)
H2N0.559 (3)0.270 (3)0.377 (2)0.022*
N30.52218 (19)0.23502 (18)0.55031 (16)0.0181 (3)
N41.1329 (2)0.0074 (2)0.7938 (2)0.0357 (5)
C10.1296 (2)0.3704 (2)0.4975 (2)0.0217 (4)
H10.06350.38060.56790.026*
C20.2613 (2)0.3278 (2)0.5209 (2)0.0204 (4)
H20.28160.30860.60360.024*
C30.3625 (2)0.3139 (2)0.42154 (19)0.0164 (4)
C40.3262 (2)0.3449 (2)0.29879 (19)0.0160 (4)
C50.4207 (2)0.3368 (2)0.1905 (2)0.0191 (4)
H50.51500.31130.19830.023*
C60.3779 (2)0.3654 (2)0.0746 (2)0.0203 (4)
H60.44110.35830.00190.024*
C70.2398 (2)0.4052 (2)0.0646 (2)0.0194 (4)
C80.1449 (2)0.4147 (2)0.1657 (2)0.0193 (4)
H80.05150.44090.15570.023*
C90.1869 (2)0.3852 (2)0.28647 (19)0.0178 (4)
C100.6454 (2)0.1947 (2)0.5564 (2)0.0197 (4)
H100.70950.19190.48440.024*
C110.6892 (2)0.1527 (2)0.67264 (19)0.0192 (4)
C120.8252 (2)0.1113 (2)0.6757 (2)0.0216 (4)
H120.88670.10860.60200.026*
C130.8715 (2)0.0735 (2)0.7873 (2)0.0231 (4)
C140.7821 (3)0.0759 (2)0.8950 (2)0.0286 (5)
H140.81440.05080.97080.034*
C150.6451 (3)0.1154 (3)0.8908 (2)0.0298 (5)
H150.58290.11660.96400.036*
C160.5979 (3)0.1531 (2)0.7807 (2)0.0240 (4)
H160.50340.17920.77860.029*
C171.0162 (3)0.0351 (2)0.7902 (2)0.0275 (5)
O1W0.74203 (19)0.2487 (2)0.26148 (16)0.0261 (3)
H1W0.746 (3)0.160 (3)0.231 (3)0.039*
H2W0.845 (4)0.311 (3)0.302 (3)0.039*
U11U22U33U12U13U23
Cl10.0233 (2)0.0305 (3)0.0261 (3)0.0115 (2)0.00062 (18)0.0168 (2)
N10.0203 (8)0.0239 (8)0.0255 (8)0.0132 (7)0.0078 (7)0.0109 (7)
N20.0171 (8)0.0231 (8)0.0199 (8)0.0113 (6)0.0052 (6)0.0115 (7)
N30.0198 (8)0.0162 (7)0.0177 (7)0.0070 (6)0.0004 (6)0.0069 (6)
N40.0342 (10)0.0308 (10)0.0417 (11)0.0172 (9)−0.0047 (9)0.0122 (9)
C10.0209 (9)0.0243 (10)0.0229 (9)0.0116 (8)0.0080 (8)0.0097 (8)
C20.0210 (9)0.0211 (9)0.0201 (9)0.0087 (8)0.0031 (7)0.0094 (8)
C30.0150 (8)0.0130 (8)0.0191 (9)0.0044 (7)0.0018 (7)0.0055 (7)
C40.0144 (8)0.0136 (8)0.0195 (9)0.0063 (7)0.0021 (7)0.0056 (7)
C50.0162 (9)0.0211 (9)0.0225 (9)0.0100 (7)0.0031 (7)0.0094 (8)
C60.0182 (9)0.0218 (9)0.0223 (9)0.0083 (8)0.0049 (7)0.0100 (8)
C70.0188 (9)0.0179 (9)0.0217 (9)0.0067 (7)−0.0013 (7)0.0097 (7)
C80.0147 (8)0.0189 (9)0.0250 (9)0.0084 (7)0.0012 (7)0.0085 (8)
C90.0153 (8)0.0155 (8)0.0212 (9)0.0068 (7)0.0020 (7)0.0055 (7)
C100.0192 (9)0.0211 (9)0.0206 (9)0.0089 (7)0.0036 (7)0.0095 (8)
C110.0207 (9)0.0156 (8)0.0191 (9)0.0061 (7)−0.0013 (7)0.0066 (7)
C120.0212 (9)0.0182 (9)0.0236 (9)0.0066 (8)0.0017 (8)0.0085 (8)
C130.0247 (10)0.0163 (9)0.0250 (10)0.0077 (8)−0.0045 (8)0.0069 (8)
C140.0397 (12)0.0246 (10)0.0222 (10)0.0140 (9)−0.0016 (9)0.0107 (8)
C150.0408 (12)0.0311 (11)0.0229 (10)0.0172 (10)0.0082 (9)0.0138 (9)
C160.0272 (10)0.0246 (10)0.0230 (10)0.0134 (8)0.0045 (8)0.0101 (8)
C170.0321 (11)0.0200 (10)0.0266 (10)0.0093 (9)−0.0053 (9)0.0082 (8)
O1W0.0213 (7)0.0359 (8)0.0266 (8)0.0169 (7)0.0065 (6)0.0130 (7)
Cl1—C71.7454 (18)C7—C81.362 (3)
N1—C11.328 (2)C8—C91.423 (2)
N1—C91.368 (2)C8—H80.9500
N2—C31.366 (2)C10—C111.462 (2)
N2—N31.369 (2)C10—H100.9500
N2—H2N0.86 (2)C11—C121.388 (3)
N3—C101.278 (2)C11—C161.401 (3)
N4—C171.147 (3)C12—C131.401 (3)
C1—C21.393 (3)C12—H120.9500
C1—H10.9500C13—C141.386 (3)
C2—C31.389 (3)C13—C171.444 (3)
C2—H20.9500C14—C151.387 (3)
C3—C41.437 (2)C14—H140.9500
C4—C51.417 (3)C15—C161.389 (3)
C4—C91.419 (2)C15—H150.9500
C5—C61.373 (3)C16—H160.9500
C5—H50.9500O1W—H1W0.83 (3)
C6—C71.403 (3)O1W—H2W0.86 (3)
C6—H60.9500
C1—N1—C9116.07 (16)C9—C8—H8120.3
C3—N2—N3119.16 (15)N1—C9—C4123.72 (16)
C3—N2—H2N121.4 (14)N1—C9—C8116.93 (16)
N3—N2—H2N119.4 (14)C4—C9—C8119.35 (16)
C10—N3—N2115.64 (16)N3—C10—C11120.96 (17)
N1—C1—C2125.78 (18)N3—C10—H10119.5
N1—C1—H1117.1C11—C10—H10119.5
C2—C1—H1117.1C12—C11—C16119.17 (17)
C3—C2—C1118.91 (17)C12—C11—C10118.91 (17)
C3—C2—H2120.5C16—C11—C10121.92 (17)
C1—C2—H2120.5C11—C12—C13120.01 (18)
N2—C3—C2122.36 (16)C11—C12—H12120.0
N2—C3—C4119.55 (16)C13—C12—H12120.0
C2—C3—C4118.09 (16)C14—C13—C12120.63 (18)
C5—C4—C9118.81 (16)C14—C13—C17120.38 (17)
C5—C4—C3123.77 (16)C12—C13—C17118.98 (19)
C9—C4—C3117.42 (16)C13—C14—C15119.29 (18)
C6—C5—C4120.96 (17)C13—C14—H14120.4
C6—C5—H5119.5C15—C14—H14120.4
C4—C5—H5119.5C14—C15—C16120.6 (2)
C5—C6—C7119.30 (18)C14—C15—H15119.7
C5—C6—H6120.4C16—C15—H15119.7
C7—C6—H6120.4C15—C16—C11120.31 (19)
C8—C7—C6122.12 (17)C15—C16—H16119.8
C8—C7—Cl1119.72 (14)C11—C16—H16119.8
C6—C7—Cl1118.16 (15)N4—C17—C13178.8 (2)
C7—C8—C9119.46 (16)H1W—O1W—H2W102 (2)
C7—C8—H8120.3
C3—N2—N3—C10179.41 (16)C5—C4—C9—N1−179.23 (17)
C9—N1—C1—C2−1.0 (3)C3—C4—C9—N11.1 (3)
N1—C1—C2—C30.9 (3)C5—C4—C9—C80.6 (3)
N3—N2—C3—C22.4 (3)C3—C4—C9—C8−179.14 (16)
N3—N2—C3—C4−177.19 (15)C7—C8—C9—N1179.30 (17)
C1—C2—C3—N2−179.34 (17)C7—C8—C9—C4−0.5 (3)
C1—C2—C3—C40.2 (3)N2—N3—C10—C11−179.76 (16)
N2—C3—C4—C5−1.2 (3)N3—C10—C11—C12−179.33 (17)
C2—C3—C4—C5179.21 (17)N3—C10—C11—C160.7 (3)
N2—C3—C4—C9178.48 (16)C16—C11—C12—C13−1.2 (3)
C2—C3—C4—C9−1.1 (2)C10—C11—C12—C13178.81 (17)
C9—C4—C5—C6−0.7 (3)C11—C12—C13—C140.4 (3)
C3—C4—C5—C6178.94 (17)C11—C12—C13—C17−178.30 (17)
C4—C5—C6—C70.8 (3)C12—C13—C14—C150.4 (3)
C5—C6—C7—C8−0.8 (3)C17—C13—C14—C15179.10 (19)
C5—C6—C7—Cl1178.69 (14)C13—C14—C15—C16−0.4 (3)
C6—C7—C8—C90.6 (3)C14—C15—C16—C11−0.4 (3)
Cl1—C7—C8—C9−178.84 (14)C12—C11—C16—C151.2 (3)
C1—N1—C9—C40.0 (3)C10—C11—C16—C15−178.82 (19)
C1—N1—C9—C8−179.86 (17)
D—H···AD—HH···AD···AD—H···A
O1w—H1w···N4i0.83 (3)2.21 (3)2.982 (3)155 (3)
O1w—H2w···N1ii0.86 (3)1.99 (3)2.828 (3)164 (3)
N2—H2n···O1w0.86 (3)2.07 (3)2.917 (2)167 (3)
C5—H5···O1w0.952.393.331 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1w—H1w⋯N4i 0.83 (3)2.21 (3)2.982 (3)155 (3)
O1w—H2w⋯N1ii 0.86 (3)1.99 (3)2.828 (3)164 (3)
N2—H2n⋯O1w0.86 (3)2.07 (3)2.917 (2)167 (3)
C5—H5⋯O1w0.952.393.331 (3)169

Symmetry codes: (i) ; (ii) .

  14 in total

Review 1.  Medical need, scientific opportunity and the drive for antimalarial drugs.

Authors:  Robert G Ridley
Journal:  Nature       Date:  2002-02-07       Impact factor: 49.962

Review 2.  New fluoroquinolones: a class of potent antibiotics.

Authors:  Marcus Vinícius Nora De Souza
Journal:  Mini Rev Med Chem       Date:  2005-11       Impact factor: 3.862

3.  Design and synthesis of substituted quinolines as novel and selective melanin concentrating hormone antagonists as anti-obesity agents.

Authors:  Namal C Warshakoon; Justin Sheville; Ritu Tiku Bhatt; Wei Ji; Jose L Mendez-Andino; Kenneth M Meyers; Nick Kim; John A Wos; Chrissy Mitchell; Jennifer L Paris; Beth B Pinney; Ofer Reizes; X Eric Hu
Journal:  Bioorg Med Chem Lett       Date:  2006-07-25       Impact factor: 2.823

4.  Structure-activity relationships in quinoline Reissert derivatives with HIV-1 reverse transcriptase inhibitory activity.

Authors:  M Font; A Monge; I Ruiz; B Heras
Journal:  Drug Des Discov       Date:  1997-04

5.  Enhanced activity of mefloquine and artesunic acid against Plasmodium falciparum in vitro and P. berghei in mice by combination with ciprofloxacin.

Authors:  Anderson Assunção Andrade; Fernando de Pilla Varotti; Isabela Oliveira de Freitas; Marcus Vinícius Nora de Souza; Thatyana Rocha Alves Vasconcelos; Núbia Boechat; Antoniana Ursine Krettli
Journal:  Eur J Pharmacol       Date:  2006-12-12       Impact factor: 4.432

6.  Quinolone antibacterial agents. Oxolinic acid and related compounds.

Authors:  D Kaminsky; R I Meltzer
Journal:  J Med Chem       Date:  1968-01       Impact factor: 7.446

Review 7.  Antimalarial agents. Chloroquine, hydroxychloroquine, and quinacrine.

Authors:  L Tanenbaum; D L Tuffanelli
Journal:  Arch Dermatol       Date:  1980-05

8.  Antifungal properties of new series of quinoline derivatives.

Authors:  Robert Musiol; Josef Jampilek; Vladimir Buchta; Luis Silva; Halina Niedbala; Barbara Podeszwa; Anna Palka; Katarzyna Majerz-Maniecka; Barbara Oleksyn; Jaroslaw Polanski
Journal:  Bioorg Med Chem       Date:  2006-02-03       Impact factor: 3.641

9.  Direct interaction between a quinoline derivative, MS-209, and multidrug resistance protein (MRP) in human gastric cancer cells.

Authors:  T Nakamura; M Oka; K Aizawa; H Soda; M Fukuda; K Terashi; K Ikeda; Y Mizuta; Y Noguchi; Y Kimura; T Tsuruo; S Kohno
Journal:  Biochem Biophys Res Commun       Date:  1999-02-24       Impact factor: 3.575

10.  Repository drugs. 8. Ester and amide congeners of amodiaquine, hydroxychloroquine, oxychloroquine, primaquine, quinacrine, and related substances as potential long-acting antimalarial agents.

Authors:  E F Elslager; F H Tendick; L M Werbel
Journal:  J Med Chem       Date:  1969-07       Impact factor: 7.446

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  2 in total

1.  7-Chloro-4-[(E)-N'-(4-fluoro-benzyl-idene)hydrazin-yl]quinoline monohydrate.

Authors:  Marcus V N de Souza; R Alan Howie; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-16

2.  (E)-2-[2-(4-Chloro-benzyl-idene)hydrazin-1-yl]-4-{[3-(dimethyl-aza-nium-yl)prop-yl]amino}-quinazolin-1-ium bis-(perchlorate).

Authors:  Nan Jiang; Jian Zuo; Haiyan Wang; Ming Han; Xin Zhai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28
  2 in total

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