Literature DB >> 21580042

7-Chloro-4-[(E)-N'-(4-fluoro-benzyl-idene)hydrazin-yl]quinoline monohydrate.

Marcus V N de Souza, R Alan Howie, Edward R T Tiekink, James L Wardell, Solange M S V Wardell.   

Abstract

The mol-ecule of the title hydrate, C(16)H(11)ClFN(3)·H(2)O, is slightly twisted, as indicated by the dihedral angle of 9.55 (10)° formed between the quinoline ring system and the benzene ring. The conformation about the C=N double bond is E, and the amine-H atom is oriented towards the quinoline residue. In the crystal structure, the water mol-ecule accepts an N-H⋯O and makes two O-H⋯N(quinoline) hydrogen bonds, generating a two-dimensional array in the ab plane, which is further stabilized by C-H⋯O inter-actions. The most significant contacts between layers are of the type C-H⋯F.

Entities:  

Year:  2009        PMID: 21580042      PMCID: PMC2980273          DOI: 10.1107/S1600536809053367

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on the pharmacological activity of quinoline derivatives, see: Elslager et al. (1969 ▶); Font et al. (1997 ▶); Kaminsky & Meltzer (1968 ▶); Musiol et al. (2006 ▶); Nakamura et al. (1999 ▶); Palmer et al. (1993 ▶); Ridley (2002 ▶); Sloboda et al. (1991 ▶); Tanenbaum & Tuffanelli (1980 ▶); Warshakoon et al. (2006 ▶). For recent studies into quinoline-based anti-malarials, see: Andrade et al. (2007 ▶); Cunico et al. (2006 ▶); da Silva et al. (2003 ▶); de Souza et al. (2005 ▶). For crystallographic studies on mol­ecules related to the title compound, see: Kaiser et al. (2009 ▶); de Souza et al. (2009 ▶); de Ferreira et al. (2009 ▶). For the synthesis, see: Pellerano et al. (1976 ▶).

Experimental

Crystal data

C16H11ClFN3·H2O M = 317.74 Monoclinic, a = 3.7795 (2) Å b = 15.4188 (11) Å c = 24.8576 (16) Å β = 90.286 (4)° V = 1448.57 (16) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 120 K 0.90 × 0.04 × 0.04 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.614, T max = 0.746 19494 measured reflections 3291 independent reflections 2009 reflections with I > 2σ(I) R int = 0.098

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.131 S = 1.04 3291 reflections 205 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.37 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809053367/lh2970sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809053367/lh2970Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11ClFN3·H2OF(000) = 656
Mr = 317.74Dx = 1.457 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 13530 reflections
a = 3.7795 (2) Åθ = 2.9–27.5°
b = 15.4188 (11) ŵ = 0.28 mm1
c = 24.8576 (16) ÅT = 120 K
β = 90.286 (4)°Needle, colourless
V = 1448.57 (16) Å30.90 × 0.04 × 0.04 mm
Z = 4
Enraf–Nonius KappaCCD area-detector diffractometer3291 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode2009 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.098
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.1°
φ and ω scansh = −4→4
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −20→19
Tmin = 0.614, Tmax = 0.746l = −32→32
19494 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0463P)2 + 0.5902P] where P = (Fo2 + 2Fc2)/3
3291 reflections(Δ/σ)max < 0.001
205 parametersΔρmax = 0.33 e Å3
3 restraintsΔρmin = −0.37 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.85154 (18)−0.01273 (5)0.43677 (3)0.0319 (2)
F10.1997 (4)0.22958 (11)−0.11624 (6)0.0367 (5)
N10.3942 (5)−0.13713 (14)0.26095 (9)0.0214 (5)
N20.6585 (5)0.08516 (14)0.17189 (8)0.0221 (5)
H2N0.78470.12680.18670.027*
N30.5476 (5)0.09163 (15)0.11914 (8)0.0212 (5)
C10.3270 (7)−0.12969 (18)0.20855 (11)0.0225 (6)
H10.2176−0.17760.19110.027*
C20.4043 (6)−0.05737 (18)0.17733 (10)0.0210 (6)
H20.3436−0.05660.14020.025*
C30.5701 (6)0.01357 (17)0.20052 (10)0.0178 (6)
C40.6457 (6)0.01003 (16)0.25750 (10)0.0176 (6)
C50.8024 (6)0.07868 (18)0.28696 (11)0.0210 (6)
H50.86800.13030.26870.025*
C60.8613 (6)0.07213 (18)0.34118 (10)0.0220 (6)
H60.96550.11890.36050.026*
C70.7663 (7)−0.00432 (18)0.36790 (11)0.0218 (6)
C80.6151 (6)−0.07217 (18)0.34132 (10)0.0214 (6)
H80.5531−0.12330.36040.026*
C90.5501 (6)−0.06654 (16)0.28533 (10)0.0179 (6)
C100.6205 (7)0.16293 (18)0.09495 (11)0.0219 (6)
H100.75070.20640.11360.026*
C110.5085 (7)0.17884 (18)0.03962 (11)0.0216 (6)
C120.3483 (7)0.11448 (18)0.00825 (11)0.0231 (6)
H120.30870.05860.02320.028*
C130.2471 (7)0.13101 (18)−0.04411 (11)0.0237 (6)
H130.14090.0871−0.06560.028*
C140.3041 (7)0.21294 (19)−0.06453 (11)0.0256 (7)
C150.4572 (7)0.27824 (19)−0.03525 (11)0.0269 (7)
H150.49110.3342−0.05040.032*
C160.5614 (7)0.26028 (18)0.01715 (11)0.0232 (6)
H160.67080.30440.03800.028*
O1W0.0566 (5)0.23633 (12)0.20098 (8)0.0287 (5)
H1W0.262 (3)0.2503 (17)0.2111 (12)0.043*
H2W−0.086 (5)0.2775 (13)0.2069 (12)0.043*
U11U22U33U12U13U23
Cl10.0381 (4)0.0386 (5)0.0191 (4)−0.0007 (3)−0.0065 (3)−0.0001 (3)
F10.0475 (10)0.0422 (11)0.0205 (9)0.0086 (8)−0.0082 (8)0.0037 (8)
N10.0218 (12)0.0225 (13)0.0200 (13)0.0000 (10)−0.0006 (9)−0.0006 (10)
N20.0269 (12)0.0218 (13)0.0177 (12)−0.0046 (10)−0.0046 (9)0.0001 (10)
N30.0219 (12)0.0265 (14)0.0153 (12)0.0018 (10)−0.0022 (9)0.0005 (10)
C10.0185 (14)0.0204 (16)0.0286 (17)0.0005 (11)−0.0024 (12)−0.0026 (13)
C20.0204 (14)0.0270 (16)0.0156 (14)0.0007 (12)−0.0052 (11)−0.0005 (12)
C30.0150 (13)0.0189 (15)0.0195 (14)0.0014 (11)−0.0008 (10)−0.0011 (12)
C40.0151 (13)0.0168 (14)0.0209 (14)0.0033 (11)−0.0002 (10)−0.0018 (12)
C50.0204 (14)0.0189 (15)0.0237 (15)0.0012 (11)0.0001 (11)−0.0018 (12)
C60.0242 (15)0.0210 (16)0.0208 (15)−0.0003 (12)−0.0035 (11)−0.0059 (12)
C70.0204 (14)0.0276 (17)0.0175 (14)0.0030 (12)−0.0016 (11)−0.0034 (12)
C80.0198 (14)0.0223 (16)0.0220 (15)0.0050 (12)−0.0007 (11)0.0046 (12)
C90.0154 (13)0.0149 (14)0.0233 (15)0.0003 (11)−0.0026 (10)−0.0030 (12)
C100.0222 (15)0.0215 (16)0.0221 (16)0.0019 (12)0.0000 (11)−0.0046 (13)
C110.0185 (14)0.0253 (16)0.0209 (15)0.0030 (12)0.0004 (11)0.0010 (12)
C120.0261 (15)0.0194 (15)0.0238 (16)−0.0004 (12)0.0010 (12)−0.0001 (12)
C130.0240 (15)0.0241 (16)0.0229 (16)0.0009 (12)−0.0018 (12)−0.0045 (13)
C140.0273 (15)0.0350 (18)0.0145 (14)0.0051 (13)−0.0025 (11)0.0012 (13)
C150.0265 (15)0.0256 (17)0.0287 (17)0.0025 (13)−0.0004 (12)0.0043 (13)
C160.0244 (15)0.0240 (16)0.0213 (15)−0.0016 (12)−0.0012 (11)−0.0037 (13)
O1W0.0255 (11)0.0227 (11)0.0377 (13)−0.0003 (9)−0.0020 (9)−0.0045 (9)
Cl1—C71.745 (3)C6—H60.9500
F1—C141.367 (3)C7—C81.362 (4)
N1—C11.331 (3)C8—C91.414 (3)
N1—C91.377 (3)C8—H80.9500
N2—C31.356 (3)C10—C111.458 (4)
N2—N31.378 (3)C10—H100.9500
N2—H2N0.8800C11—C161.389 (4)
N3—C101.284 (3)C11—C121.398 (4)
C1—C21.390 (4)C12—C131.379 (4)
C1—H10.9500C12—H120.9500
C2—C31.385 (4)C13—C141.379 (4)
C2—H20.9500C13—H130.9500
C3—C41.445 (3)C14—C151.369 (4)
C4—C51.415 (4)C15—C161.387 (4)
C4—C91.416 (4)C15—H150.9500
C5—C61.369 (3)C16—H160.9500
C5—H50.9500O1W—H1W0.841 (10)
C6—C71.401 (4)O1W—H2W0.845 (10)
C1—N1—C9116.2 (2)C7—C8—H8120.0
C3—N2—N3118.9 (2)C9—C8—H8120.0
C3—N2—H2N120.5N1—C9—C8117.2 (2)
N3—N2—H2N120.5N1—C9—C4123.6 (2)
C10—N3—N2116.3 (2)C8—C9—C4119.2 (2)
N1—C1—C2125.2 (3)N3—C10—C11121.6 (2)
N1—C1—H1117.4N3—C10—H10119.2
C2—C1—H1117.4C11—C10—H10119.2
C3—C2—C1119.8 (2)C16—C11—C12118.7 (2)
C3—C2—H2120.1C16—C11—C10119.3 (2)
C1—C2—H2120.1C12—C11—C10122.0 (3)
N2—C3—C2122.4 (2)C13—C12—C11120.8 (3)
N2—C3—C4119.8 (2)C13—C12—H12119.6
C2—C3—C4117.7 (2)C11—C12—H12119.6
C5—C4—C9118.5 (2)C12—C13—C14118.3 (3)
C5—C4—C3124.0 (2)C12—C13—H13120.9
C9—C4—C3117.4 (2)C14—C13—H13120.9
C6—C5—C4121.3 (3)F1—C14—C15118.8 (3)
C6—C5—H5119.3F1—C14—C13118.3 (2)
C4—C5—H5119.3C15—C14—C13123.0 (3)
C5—C6—C7119.2 (2)C14—C15—C16118.0 (3)
C5—C6—H6120.4C14—C15—H15121.0
C7—C6—H6120.4C16—C15—H15121.0
C8—C7—C6121.6 (2)C15—C16—C11121.2 (3)
C8—C7—Cl1119.6 (2)C15—C16—H16119.4
C6—C7—Cl1118.8 (2)C11—C16—H16119.4
C7—C8—C9120.0 (2)H1W—O1W—H2W110.0 (16)
C3—N2—N3—C10176.0 (2)C7—C8—C9—N1−179.5 (2)
C9—N1—C1—C20.5 (4)C7—C8—C9—C40.3 (4)
N1—C1—C2—C31.3 (4)C5—C4—C9—N1179.6 (2)
N3—N2—C3—C26.9 (4)C3—C4—C9—N10.7 (4)
N3—N2—C3—C4−172.4 (2)C5—C4—C9—C8−0.2 (3)
C1—C2—C3—N2178.6 (2)C3—C4—C9—C8−179.1 (2)
C1—C2—C3—C4−2.0 (4)N2—N3—C10—C11−178.2 (2)
N2—C3—C4—C51.6 (4)N3—C10—C11—C16173.3 (2)
C2—C3—C4—C5−177.7 (2)N3—C10—C11—C12−6.6 (4)
N2—C3—C4—C9−179.5 (2)C16—C11—C12—C130.5 (4)
C2—C3—C4—C91.1 (3)C10—C11—C12—C13−179.5 (2)
C9—C4—C5—C6−0.1 (4)C11—C12—C13—C14−0.8 (4)
C3—C4—C5—C6178.7 (2)C12—C13—C14—F1−179.2 (2)
C4—C5—C6—C70.4 (4)C12—C13—C14—C150.2 (4)
C5—C6—C7—C8−0.3 (4)F1—C14—C15—C16180.0 (2)
C5—C6—C7—Cl1178.65 (19)C13—C14—C15—C160.5 (4)
C6—C7—C8—C90.0 (4)C14—C15—C16—C11−0.8 (4)
Cl1—C7—C8—C9−178.98 (18)C12—C11—C16—C150.2 (4)
C1—N1—C9—C8178.3 (2)C10—C11—C16—C15−179.7 (2)
C1—N1—C9—C4−1.5 (4)
D—H···AD—HH···AD···AD—H···A
O1w—H1w···N1i0.843 (16)2.28 (2)2.999 (3)144 (2)
O1w—H2w···N1ii0.85 (2)1.93 (2)2.761 (3)166 (3)
N2—H2n···O1wiii0.882.012.865 (3)165
C5—H5···O1wiii0.952.453.379 (3)164
C10—H10···O1wiii0.952.503.302 (3)142
C1—H1···F1iv0.952.563.399 (3)147
C6—H6···F1v0.952.563.477 (3)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1w—H1w⋯N1i0.84 (2)2.28 (2)2.999 (3)144 (2)
O1w—H2w⋯N1ii0.85 (2)1.93 (2)2.761 (3)166 (3)
N2—H2n⋯O1wiii0.882.012.865 (3)165
C5—H5⋯O1wiii0.952.453.379 (3)164
C10—H10⋯O1wiii0.952.503.302 (3)142
C1—H1⋯F1iv0.952.563.399 (3)147
C6—H6⋯F1v0.952.563.477 (3)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  17 in total

Review 1.  Medical need, scientific opportunity and the drive for antimalarial drugs.

Authors:  Robert G Ridley
Journal:  Nature       Date:  2002-02-07       Impact factor: 49.962

2.  Antiinflammatory and antiarthritic properties of a substituted quinoline carboxylic acid: CL 306,293.

Authors:  A E Sloboda; D Powell; J F Poletto; W C Pickett; J J Gibbons; D H Bell; A L Oronsky; S S Kerwar
Journal:  J Rheumatol       Date:  1991-06       Impact factor: 4.666

3.  Structure-activity relationships in quinoline Reissert derivatives with HIV-1 reverse transcriptase inhibitory activity.

Authors:  M Font; A Monge; I Ruiz; B Heras
Journal:  Drug Des Discov       Date:  1997-04

4.  Quinolone antibacterial agents. Oxolinic acid and related compounds.

Authors:  D Kaminsky; R I Meltzer
Journal:  J Med Chem       Date:  1968-01       Impact factor: 7.446

Review 5.  Antimalarial agents. Chloroquine, hydroxychloroquine, and quinacrine.

Authors:  L Tanenbaum; D L Tuffanelli
Journal:  Arch Dermatol       Date:  1980-05

6.  Direct interaction between a quinoline derivative, MS-209, and multidrug resistance protein (MRP) in human gastric cancer cells.

Authors:  T Nakamura; M Oka; K Aizawa; H Soda; M Fukuda; K Terashi; K Ikeda; Y Mizuta; Y Noguchi; Y Kimura; T Tsuruo; S Kohno
Journal:  Biochem Biophys Res Commun       Date:  1999-02-24       Impact factor: 3.575

Review 7.  Mefloquine. A review of its antimalarial activity, pharmacokinetic properties and therapeutic efficacy.

Authors:  K J Palmer; S M Holliday; R N Brogden
Journal:  Drugs       Date:  1993-03       Impact factor: 9.546

8.  4-[(2-Chloro-ethyl)amino]quinolinium chloride monohydrate.

Authors:  Marcus V N de Souza; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-21

9.  Repository drugs. 8. Ester and amide congeners of amodiaquine, hydroxychloroquine, oxychloroquine, primaquine, quinacrine, and related substances as potential long-acting antimalarial agents.

Authors:  E F Elslager; F H Tendick; L M Werbel
Journal:  J Med Chem       Date:  1969-07       Impact factor: 7.446

10.  3-[(E)-(7-Chloro-4-quinol-yl)hydrazono-meth-yl]benzonitrile monohydrate.

Authors:  Marcelle L de Ferreira; Marcus V N de Souza; R Alan Howie; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28
View more
  3 in total

1.  7-Chloro-4-[(E)-2-(4-methoxy-benzyl-idene)hydrazin-1-yl]quinoline monohydrate.

Authors:  Marcelle de Lima Ferreira; Marcus V N de Souza; R Alan Howie; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27

2.  7-Chloro-4-[(E)-2-(2-methoxy-benzyl-idene)hydrazin-1-yl]quinoline monohydrate.

Authors:  Marcus V N de Souza; R Alan Howie; Edward R T Tiekink; James L Wardell; Solange M S V Wardell; Carlos R Kaiser
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27

3.  (E)-2-[2-(4-Chloro-benzyl-idene)hydrazin-1-yl]-4-{[3-(dimethyl-aza-nium-yl)prop-yl]amino}-quinazolin-1-ium bis-(perchlorate).

Authors:  Nan Jiang; Jian Zuo; Haiyan Wang; Ming Han; Xin Zhai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28
  3 in total

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