| Literature DB >> 21523079 |
Wan-Sin Loh, Hoong-Kun Fun, Reshma Kayarmar, S Viveka, G K Nagaraja.
Abstract
In the title compound, C(21)H(20)ClN(5)·H(2)O, the 1H-imidazo[4,5-c]quinoline ring is approximately planar, with a maximum deviation of 0.0795 (7) Å, and it forms a dihedral angle of 7.65 (3)° with the chloro-phenyl ring. In the crystal, the components are linked into chains along the a axis via inter-molecular N-H⋯O, O-H⋯N and C-H⋯O hydrogen bonds. One of the H atoms of the water mol-ecule is disordered over two positions with a site-occupancy ratio of 0.80 (4):0.20 (4).Entities:
Year: 2011 PMID: 21523079 PMCID: PMC3051724 DOI: 10.1107/S1600536811001577
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H20ClN5·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9978 reflections |
| θ = 4.0–37.5° | |
| µ = 0.21 mm−1 | |
| β = 117.809 (2)° | Plate, yellow |
| 0.49 × 0.45 × 0.18 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 10411 independent reflections |
| Radiation source: fine-focus sealed tube | 8351 reflections with |
| graphite | |
| φ and ω scans | θmax = 37.6°, θmin = 4.0° |
| Absorption correction: multi-scan ( | |
| 39468 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 10411 reflections | (Δ/σ)max = 0.001 |
| 260 parameters | Δρmax = 1.19 e Å−3 |
| 0 restraints | Δρmin = −0.47 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Cl1 | −0.37283 (3) | −0.053039 (16) | 0.46655 (3) | 0.03357 (7) | |
| N1 | 0.00417 (7) | 0.13498 (4) | 0.01185 (6) | 0.01373 (11) | |
| N2 | 0.33923 (7) | 0.14996 (4) | −0.08204 (7) | 0.01514 (11) | |
| N3 | 0.35384 (7) | 0.06015 (4) | 0.05254 (7) | 0.01630 (12) | |
| N4 | 0.13161 (8) | 0.03567 (4) | 0.13737 (7) | 0.01564 (11) | |
| N5 | 0.02778 (7) | 0.02713 (4) | 0.17545 (6) | 0.01482 (11) | |
| C1 | 0.09304 (8) | 0.20371 (4) | −0.11917 (7) | 0.01242 (11) | |
| C2 | 0.06369 (8) | 0.25958 (4) | −0.21028 (7) | 0.01464 (12) | |
| H2A | 0.1260 | 0.2664 | −0.2455 | 0.018* | |
| C3 | −0.05646 (8) | 0.30406 (4) | −0.24743 (7) | 0.01589 (12) | |
| H3A | −0.0749 | 0.3407 | −0.3075 | 0.019* | |
| C4 | −0.15108 (8) | 0.29408 (4) | −0.19448 (8) | 0.01637 (13) | |
| H4A | −0.2297 | 0.3255 | −0.2171 | 0.020* | |
| C5 | −0.12834 (8) | 0.23813 (4) | −0.10935 (8) | 0.01560 (12) | |
| H5A | −0.1932 | 0.2314 | −0.0768 | 0.019* | |
| C6 | −0.00740 (8) | 0.19089 (4) | −0.07104 (7) | 0.01287 (11) | |
| C7 | 0.11700 (8) | 0.09093 (4) | 0.05390 (7) | 0.01293 (11) | |
| C8 | 0.22740 (8) | 0.09992 (4) | 0.01609 (7) | 0.01314 (11) | |
| C9 | 0.21572 (8) | 0.15557 (4) | −0.06761 (7) | 0.01280 (11) | |
| C10 | 0.41677 (9) | 0.09246 (4) | −0.00837 (8) | 0.01736 (13) | |
| H10A | 0.5054 | 0.0774 | −0.0017 | 0.021* | |
| C11 | 0.04705 (9) | −0.02385 (4) | 0.25628 (7) | 0.01614 (13) | |
| H11A | 0.1279 | −0.0543 | 0.2850 | 0.019* | |
| C12 | −0.05978 (9) | −0.03357 (4) | 0.30283 (7) | 0.01541 (12) | |
| C13 | −0.18721 (9) | 0.00855 (4) | 0.25432 (7) | 0.01694 (13) | |
| H13A | −0.2067 | 0.0415 | 0.1887 | 0.020* | |
| C14 | −0.28457 (10) | 0.00168 (5) | 0.30303 (8) | 0.01947 (14) | |
| H14A | −0.3690 | 0.0296 | 0.2704 | 0.023* | |
| C15 | −0.25383 (10) | −0.04775 (5) | 0.40152 (8) | 0.02080 (15) | |
| C16 | −0.13059 (11) | −0.09132 (5) | 0.44958 (8) | 0.02182 (15) | |
| H16A | −0.1126 | −0.1248 | 0.5142 | 0.026* | |
| C17 | −0.03391 (10) | −0.08415 (5) | 0.39943 (8) | 0.01941 (14) | |
| H17A | 0.0488 | −0.1134 | 0.4306 | 0.023* | |
| C18 | 0.38977 (9) | 0.19795 (4) | −0.15243 (8) | 0.01655 (13) | |
| H18A | 0.3124 | 0.2040 | −0.2385 | 0.020* | |
| H18B | 0.4711 | 0.1749 | −0.1570 | 0.020* | |
| C19 | 0.43656 (8) | 0.27358 (4) | −0.09030 (8) | 0.01657 (13) | |
| H19A | 0.3546 | 0.2959 | −0.0839 | 0.020* | |
| C20 | 0.56378 (11) | 0.26719 (6) | 0.04269 (9) | 0.02498 (17) | |
| H20A | 0.5932 | 0.3153 | 0.0784 | 0.037* | |
| H20B | 0.6435 | 0.2433 | 0.0383 | 0.037* | |
| H20C | 0.5349 | 0.2390 | 0.0952 | 0.037* | |
| C21 | 0.47505 (11) | 0.32187 (6) | −0.17470 (10) | 0.02624 (18) | |
| H21A | 0.5008 | 0.3700 | −0.1382 | 0.039* | |
| H21B | 0.3929 | 0.3253 | −0.2576 | 0.039* | |
| H21C | 0.5556 | 0.3008 | −0.1815 | 0.039* | |
| H1N4 | 0.2039 (19) | 0.0049 (9) | 0.1601 (16) | 0.035 (4)* | |
| O1W | 0.70320 (9) | 0.09494 (4) | 0.93489 (12) | 0.0421 (3) | |
| H1W1 | 0.7912 | 0.1025 | 0.9595 | 0.063* | |
| H2WA | 0.6633 | 0.0764 | 0.8603 | 0.063* | 0.80 (4) |
| H2WB | 0.6915 | 0.0492 | 0.9405 | 0.063* | 0.20 (4) |
| Cl1 | 0.03921 (14) | 0.03795 (14) | 0.03987 (14) | −0.00160 (10) | 0.03211 (12) | 0.00615 (10) |
| N1 | 0.0138 (2) | 0.0145 (2) | 0.0160 (2) | 0.00128 (19) | 0.0096 (2) | 0.0020 (2) |
| N2 | 0.0138 (2) | 0.0149 (3) | 0.0216 (3) | 0.0012 (2) | 0.0124 (2) | 0.0016 (2) |
| N3 | 0.0137 (3) | 0.0151 (3) | 0.0227 (3) | 0.0020 (2) | 0.0107 (2) | 0.0021 (2) |
| N4 | 0.0154 (3) | 0.0166 (3) | 0.0188 (3) | 0.0029 (2) | 0.0112 (2) | 0.0044 (2) |
| N5 | 0.0165 (3) | 0.0153 (3) | 0.0161 (3) | −0.0005 (2) | 0.0104 (2) | 0.0009 (2) |
| C1 | 0.0114 (3) | 0.0139 (3) | 0.0136 (3) | 0.0000 (2) | 0.0072 (2) | 0.0001 (2) |
| C2 | 0.0139 (3) | 0.0168 (3) | 0.0152 (3) | 0.0000 (2) | 0.0085 (2) | 0.0017 (2) |
| C3 | 0.0142 (3) | 0.0177 (3) | 0.0162 (3) | 0.0010 (2) | 0.0074 (2) | 0.0034 (2) |
| C4 | 0.0134 (3) | 0.0168 (3) | 0.0196 (3) | 0.0019 (2) | 0.0083 (2) | 0.0032 (2) |
| C5 | 0.0134 (3) | 0.0169 (3) | 0.0197 (3) | 0.0020 (2) | 0.0103 (2) | 0.0029 (2) |
| C6 | 0.0122 (3) | 0.0142 (3) | 0.0147 (3) | 0.0002 (2) | 0.0084 (2) | 0.0004 (2) |
| C7 | 0.0132 (3) | 0.0136 (3) | 0.0141 (3) | −0.0003 (2) | 0.0081 (2) | −0.0001 (2) |
| C8 | 0.0121 (3) | 0.0132 (3) | 0.0163 (3) | 0.0004 (2) | 0.0084 (2) | 0.0003 (2) |
| C9 | 0.0120 (3) | 0.0138 (3) | 0.0154 (3) | −0.0003 (2) | 0.0087 (2) | −0.0003 (2) |
| C10 | 0.0149 (3) | 0.0157 (3) | 0.0258 (3) | 0.0025 (2) | 0.0132 (3) | 0.0025 (3) |
| C11 | 0.0175 (3) | 0.0161 (3) | 0.0162 (3) | 0.0004 (2) | 0.0090 (2) | 0.0025 (2) |
| C12 | 0.0187 (3) | 0.0150 (3) | 0.0142 (3) | −0.0020 (2) | 0.0091 (2) | 0.0007 (2) |
| C13 | 0.0193 (3) | 0.0173 (3) | 0.0167 (3) | −0.0005 (2) | 0.0105 (3) | 0.0020 (2) |
| C14 | 0.0211 (3) | 0.0198 (3) | 0.0218 (3) | −0.0012 (3) | 0.0136 (3) | 0.0011 (3) |
| C15 | 0.0261 (4) | 0.0216 (3) | 0.0209 (3) | −0.0049 (3) | 0.0162 (3) | −0.0001 (3) |
| C16 | 0.0277 (4) | 0.0224 (4) | 0.0189 (3) | −0.0022 (3) | 0.0138 (3) | 0.0045 (3) |
| C17 | 0.0228 (4) | 0.0192 (3) | 0.0175 (3) | 0.0001 (3) | 0.0104 (3) | 0.0043 (3) |
| C18 | 0.0162 (3) | 0.0188 (3) | 0.0200 (3) | 0.0003 (2) | 0.0130 (3) | 0.0017 (2) |
| C19 | 0.0139 (3) | 0.0177 (3) | 0.0198 (3) | 0.0002 (2) | 0.0094 (3) | 0.0031 (2) |
| C20 | 0.0216 (4) | 0.0287 (4) | 0.0210 (4) | −0.0013 (3) | 0.0070 (3) | 0.0022 (3) |
| C21 | 0.0255 (4) | 0.0260 (4) | 0.0297 (4) | −0.0023 (3) | 0.0150 (4) | 0.0094 (3) |
| O1W | 0.0217 (3) | 0.0222 (3) | 0.0865 (8) | 0.0064 (3) | 0.0287 (4) | 0.0188 (4) |
| Cl1—C15 | 1.7430 (9) | C11—H11A | 0.9300 |
| N1—C7 | 1.3143 (10) | C12—C17 | 1.3985 (11) |
| N1—C6 | 1.3842 (9) | C12—C13 | 1.4032 (12) |
| N2—C10 | 1.3638 (10) | C13—C14 | 1.3884 (11) |
| N2—C9 | 1.3782 (9) | C13—H13A | 0.9300 |
| N2—C18 | 1.4684 (10) | C14—C15 | 1.3924 (12) |
| N3—C10 | 1.3210 (10) | C14—H14A | 0.9300 |
| N3—C8 | 1.3836 (10) | C15—C16 | 1.3857 (14) |
| N4—N5 | 1.3622 (9) | C16—C17 | 1.3955 (12) |
| N4—C7 | 1.3728 (10) | C16—H16A | 0.9300 |
| N4—H1N4 | 0.875 (18) | C17—H17A | 0.9300 |
| N5—C11 | 1.2845 (10) | C18—C19 | 1.5330 (12) |
| C1—C2 | 1.4135 (10) | C18—H18A | 0.9700 |
| C1—C6 | 1.4267 (10) | C18—H18B | 0.9700 |
| C1—C9 | 1.4308 (10) | C19—C20 | 1.5222 (12) |
| C2—C3 | 1.3793 (11) | C19—C21 | 1.5233 (12) |
| C2—H2A | 0.9300 | C19—H19A | 0.9800 |
| C3—C4 | 1.4072 (11) | C20—H20A | 0.9600 |
| C3—H3A | 0.9300 | C20—H20B | 0.9600 |
| C4—C5 | 1.3783 (11) | C20—H20C | 0.9600 |
| C4—H4A | 0.9300 | C21—H21A | 0.9600 |
| C5—C6 | 1.4142 (10) | C21—H21B | 0.9600 |
| C5—H5A | 0.9300 | C21—H21C | 0.9600 |
| C7—C8 | 1.4259 (10) | O1W—H1W1 | 0.8330 |
| C8—C9 | 1.3872 (10) | O1W—H2WA | 0.8554 |
| C10—H10A | 0.9300 | O1W—H2WB | 0.8508 |
| C11—C12 | 1.4665 (11) | ||
| C7—N1—C6 | 119.13 (6) | C17—C12—C11 | 120.07 (7) |
| C10—N2—C9 | 106.49 (6) | C13—C12—C11 | 121.10 (7) |
| C10—N2—C18 | 124.26 (6) | C14—C13—C12 | 120.87 (7) |
| C9—N2—C18 | 129.08 (6) | C14—C13—H13A | 119.6 |
| C10—N3—C8 | 103.72 (6) | C12—C13—H13A | 119.6 |
| N5—N4—C7 | 119.18 (6) | C13—C14—C15 | 118.96 (8) |
| N5—N4—H1N4 | 121.7 (12) | C13—C14—H14A | 120.5 |
| C7—N4—H1N4 | 119.0 (12) | C15—C14—H14A | 120.5 |
| C11—N5—N4 | 117.46 (7) | C16—C15—C14 | 121.57 (8) |
| C2—C1—C6 | 119.31 (6) | C16—C15—Cl1 | 119.88 (6) |
| C2—C1—C9 | 126.97 (6) | C14—C15—Cl1 | 118.54 (7) |
| C6—C1—C9 | 113.71 (6) | C15—C16—C17 | 118.91 (8) |
| C3—C2—C1 | 120.60 (7) | C15—C16—H16A | 120.5 |
| C3—C2—H2A | 119.7 | C17—C16—H16A | 120.5 |
| C1—C2—H2A | 119.7 | C16—C17—C12 | 120.84 (8) |
| C2—C3—C4 | 120.01 (7) | C16—C17—H17A | 119.6 |
| C2—C3—H3A | 120.0 | C12—C17—H17A | 119.6 |
| C4—C3—H3A | 120.0 | N2—C18—C19 | 112.26 (6) |
| C5—C4—C3 | 120.59 (7) | N2—C18—H18A | 109.2 |
| C5—C4—H4A | 119.7 | C19—C18—H18A | 109.2 |
| C3—C4—H4A | 119.7 | N2—C18—H18B | 109.2 |
| C4—C5—C6 | 120.65 (7) | C19—C18—H18B | 109.2 |
| C4—C5—H5A | 119.7 | H18A—C18—H18B | 107.9 |
| C6—C5—H5A | 119.7 | C20—C19—C21 | 111.16 (7) |
| N1—C6—C5 | 116.55 (6) | C20—C19—C18 | 111.05 (7) |
| N1—C6—C1 | 124.78 (6) | C21—C19—C18 | 108.91 (7) |
| C5—C6—C1 | 118.67 (6) | C20—C19—H19A | 108.5 |
| N1—C7—N4 | 120.12 (6) | C21—C19—H19A | 108.5 |
| N1—C7—C8 | 121.23 (7) | C18—C19—H19A | 108.5 |
| N4—C7—C8 | 118.64 (6) | C19—C20—H20A | 109.5 |
| N3—C8—C9 | 111.13 (6) | C19—C20—H20B | 109.5 |
| N3—C8—C7 | 129.05 (7) | H20A—C20—H20B | 109.5 |
| C9—C8—C7 | 119.81 (6) | C19—C20—H20C | 109.5 |
| N2—C9—C8 | 105.12 (6) | H20A—C20—H20C | 109.5 |
| N2—C9—C1 | 133.65 (7) | H20B—C20—H20C | 109.5 |
| C8—C9—C1 | 121.23 (6) | C19—C21—H21A | 109.5 |
| N3—C10—N2 | 113.54 (7) | C19—C21—H21B | 109.5 |
| N3—C10—H10A | 123.2 | H21A—C21—H21B | 109.5 |
| N2—C10—H10A | 123.2 | C19—C21—H21C | 109.5 |
| N5—C11—C12 | 119.30 (7) | H21A—C21—H21C | 109.5 |
| N5—C11—H11A | 120.3 | H21B—C21—H21C | 109.5 |
| C12—C11—H11A | 120.3 | H1W1—O1W—H2WA | 110.7 |
| C17—C12—C13 | 118.81 (7) | H1W1—O1W—H2WB | 107.9 |
| C7—N4—N5—C11 | −178.12 (7) | N3—C8—C9—N2 | −0.42 (9) |
| C6—C1—C2—C3 | 3.55 (11) | C7—C8—C9—N2 | 178.87 (7) |
| C9—C1—C2—C3 | −177.20 (7) | N3—C8—C9—C1 | 179.51 (7) |
| C1—C2—C3—C4 | 0.05 (12) | C7—C8—C9—C1 | −1.21 (11) |
| C2—C3—C4—C5 | −2.71 (12) | C2—C1—C9—N2 | 3.78 (14) |
| C3—C4—C5—C6 | 1.68 (12) | C6—C1—C9—N2 | −176.94 (8) |
| C7—N1—C6—C5 | −177.76 (7) | C2—C1—C9—C8 | −176.12 (7) |
| C7—N1—C6—C1 | 2.14 (11) | C6—C1—C9—C8 | 3.17 (10) |
| C4—C5—C6—N1 | −178.17 (7) | C8—N3—C10—N2 | −0.36 (9) |
| C4—C5—C6—C1 | 1.94 (11) | C9—N2—C10—N3 | 0.12 (10) |
| C2—C1—C6—N1 | 175.61 (7) | C18—N2—C10—N3 | 175.72 (7) |
| C9—C1—C6—N1 | −3.74 (10) | N4—N5—C11—C12 | 178.17 (7) |
| C2—C1—C6—C5 | −4.50 (11) | N5—C11—C12—C17 | −174.05 (8) |
| C9—C1—C6—C5 | 176.15 (7) | N5—C11—C12—C13 | 4.30 (12) |
| C6—N1—C7—N4 | 179.21 (7) | C17—C12—C13—C14 | 1.54 (12) |
| C6—N1—C7—C8 | 0.24 (11) | C11—C12—C13—C14 | −176.82 (8) |
| N5—N4—C7—N1 | 0.18 (11) | C12—C13—C14—C15 | 0.15 (13) |
| N5—N4—C7—C8 | 179.17 (7) | C13—C14—C15—C16 | −1.62 (13) |
| C10—N3—C8—C9 | 0.48 (9) | C13—C14—C15—Cl1 | 177.25 (7) |
| C10—N3—C8—C7 | −178.72 (8) | C14—C15—C16—C17 | 1.32 (14) |
| N1—C7—C8—N3 | 178.48 (7) | Cl1—C15—C16—C17 | −177.53 (7) |
| N4—C7—C8—N3 | −0.50 (12) | C15—C16—C17—C12 | 0.44 (13) |
| N1—C7—C8—C9 | −0.66 (11) | C13—C12—C17—C16 | −1.84 (12) |
| N4—C7—C8—C9 | −179.64 (7) | C11—C12—C17—C16 | 176.54 (8) |
| C10—N2—C9—C8 | 0.18 (8) | C10—N2—C18—C19 | −105.84 (9) |
| C18—N2—C9—C8 | −175.14 (7) | C9—N2—C18—C19 | 68.72 (10) |
| C10—N2—C9—C1 | −179.73 (8) | N2—C18—C19—C20 | 62.01 (9) |
| C18—N2—C9—C1 | 4.95 (14) | N2—C18—C19—C21 | −175.26 (7) |
| H··· | ||||
| N4—H1N4···O1Wi | 0.874 (19) | 2.559 (18) | 3.2789 (13) | 140.2 (14) |
| O1W—H1W1···N1ii | 0.83 | 2.09 | 2.9178 (14) | 173 |
| C10—H10A···O1Wiii | 0.93 | 2.52 | 3.3513 (16) | 149 |
| C18—H18B···O1Wiii | 0.97 | 2.59 | 3.4776 (14) | 153 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H1 | 0.874 (19) | 2.559 (18) | 3.2789 (13) | 140.2 (14) |
| O1 | 0.83 | 2.09 | 2.9178 (14) | 173 |
| C10—H10 | 0.93 | 2.52 | 3.3513 (16) | 149 |
| C18—H18 | 0.97 | 2.59 | 3.4776 (14) | 153 |
Symmetry codes: (i) ; (ii) ; (iii) .