Literature DB >> 21523079

4-Chloro-benzaldehyde (1-isobutyl-1H-imidazo[4,5-c]quinolin-4-yl)hydrazone monohydrate.

Wan-Sin Loh, Hoong-Kun Fun, Reshma Kayarmar, S Viveka, G K Nagaraja.   

Abstract

In the title compound, C(21)H(20)ClN(5)·H(2)O, the 1H-imidazo[4,5-c]quinoline ring is approximately planar, with a maximum deviation of 0.0795 (7) Å, and it forms a dihedral angle of 7.65 (3)° with the chloro-phenyl ring. In the crystal, the components are linked into chains along the a axis via inter-molecular N-H⋯O, O-H⋯N and C-H⋯O hydrogen bonds. One of the H atoms of the water mol-ecule is disordered over two positions with a site-occupancy ratio of 0.80 (4):0.20 (4).

Entities:  

Year:  2011        PMID: 21523079      PMCID: PMC3051724          DOI: 10.1107/S1600536811001577

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to quinolines and their microbial activity, see: El-Subbagh et al. (2000 ▶); Atwell et al. (1989 ▶); Kuo et al. (1993 ▶); Xia et al. (1998 ▶). For the biological activity of Schiff base hydrazones, see: Colins & Lyne (1970 ▶); Ochiai (1977 ▶). For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Loh et al. (2011 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H20ClN5·H2O M = 395.89 Monoclinic, a = 10.4117 (3) Å b = 18.2365 (6) Å c = 11.9019 (3) Å β = 117.809 (2)° V = 1998.85 (10) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.49 × 0.45 × 0.18 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.904, T max = 0.963 39468 measured reflections 10411 independent reflections 8351 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.135 S = 1.04 10411 reflections 260 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.19 e Å−3 Δρmin = −0.47 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001577/is2658sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001577/is2658Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H20ClN5·H2OF(000) = 832
Mr = 395.89Dx = 1.316 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9978 reflections
a = 10.4117 (3) Åθ = 4.0–37.5°
b = 18.2365 (6) ŵ = 0.21 mm1
c = 11.9019 (3) ÅT = 100 K
β = 117.809 (2)°Plate, yellow
V = 1998.85 (10) Å30.49 × 0.45 × 0.18 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer10411 independent reflections
Radiation source: fine-focus sealed tube8351 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 37.6°, θmin = 4.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→17
Tmin = 0.904, Tmax = 0.963k = −31→30
39468 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0715P)2 + 0.4845P] where P = (Fo2 + 2Fc2)/3
10411 reflections(Δ/σ)max = 0.001
260 parametersΔρmax = 1.19 e Å3
0 restraintsΔρmin = −0.47 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl1−0.37283 (3)−0.053039 (16)0.46655 (3)0.03357 (7)
N10.00417 (7)0.13498 (4)0.01185 (6)0.01373 (11)
N20.33923 (7)0.14996 (4)−0.08204 (7)0.01514 (11)
N30.35384 (7)0.06015 (4)0.05254 (7)0.01630 (12)
N40.13161 (8)0.03567 (4)0.13737 (7)0.01564 (11)
N50.02778 (7)0.02713 (4)0.17545 (6)0.01482 (11)
C10.09304 (8)0.20371 (4)−0.11917 (7)0.01242 (11)
C20.06369 (8)0.25958 (4)−0.21028 (7)0.01464 (12)
H2A0.12600.2664−0.24550.018*
C3−0.05646 (8)0.30406 (4)−0.24743 (7)0.01589 (12)
H3A−0.07490.3407−0.30750.019*
C4−0.15108 (8)0.29408 (4)−0.19448 (8)0.01637 (13)
H4A−0.22970.3255−0.21710.020*
C5−0.12834 (8)0.23813 (4)−0.10935 (8)0.01560 (12)
H5A−0.19320.2314−0.07680.019*
C6−0.00740 (8)0.19089 (4)−0.07104 (7)0.01287 (11)
C70.11700 (8)0.09093 (4)0.05390 (7)0.01293 (11)
C80.22740 (8)0.09992 (4)0.01609 (7)0.01314 (11)
C90.21572 (8)0.15557 (4)−0.06761 (7)0.01280 (11)
C100.41677 (9)0.09246 (4)−0.00837 (8)0.01736 (13)
H10A0.50540.0774−0.00170.021*
C110.04705 (9)−0.02385 (4)0.25628 (7)0.01614 (13)
H11A0.1279−0.05430.28500.019*
C12−0.05978 (9)−0.03357 (4)0.30283 (7)0.01541 (12)
C13−0.18721 (9)0.00855 (4)0.25432 (7)0.01694 (13)
H13A−0.20670.04150.18870.020*
C14−0.28457 (10)0.00168 (5)0.30303 (8)0.01947 (14)
H14A−0.36900.02960.27040.023*
C15−0.25383 (10)−0.04775 (5)0.40152 (8)0.02080 (15)
C16−0.13059 (11)−0.09132 (5)0.44958 (8)0.02182 (15)
H16A−0.1126−0.12480.51420.026*
C17−0.03391 (10)−0.08415 (5)0.39943 (8)0.01941 (14)
H17A0.0488−0.11340.43060.023*
C180.38977 (9)0.19795 (4)−0.15243 (8)0.01655 (13)
H18A0.31240.2040−0.23850.020*
H18B0.47110.1749−0.15700.020*
C190.43656 (8)0.27358 (4)−0.09030 (8)0.01657 (13)
H19A0.35460.2959−0.08390.020*
C200.56378 (11)0.26719 (6)0.04269 (9)0.02498 (17)
H20A0.59320.31530.07840.037*
H20B0.64350.24330.03830.037*
H20C0.53490.23900.09520.037*
C210.47505 (11)0.32187 (6)−0.17470 (10)0.02624 (18)
H21A0.50080.3700−0.13820.039*
H21B0.39290.3253−0.25760.039*
H21C0.55560.3008−0.18150.039*
H1N40.2039 (19)0.0049 (9)0.1601 (16)0.035 (4)*
O1W0.70320 (9)0.09494 (4)0.93489 (12)0.0421 (3)
H1W10.79120.10250.95950.063*
H2WA0.66330.07640.86030.063*0.80 (4)
H2WB0.69150.04920.94050.063*0.20 (4)
U11U22U33U12U13U23
Cl10.03921 (14)0.03795 (14)0.03987 (14)−0.00160 (10)0.03211 (12)0.00615 (10)
N10.0138 (2)0.0145 (2)0.0160 (2)0.00128 (19)0.0096 (2)0.0020 (2)
N20.0138 (2)0.0149 (3)0.0216 (3)0.0012 (2)0.0124 (2)0.0016 (2)
N30.0137 (3)0.0151 (3)0.0227 (3)0.0020 (2)0.0107 (2)0.0021 (2)
N40.0154 (3)0.0166 (3)0.0188 (3)0.0029 (2)0.0112 (2)0.0044 (2)
N50.0165 (3)0.0153 (3)0.0161 (3)−0.0005 (2)0.0104 (2)0.0009 (2)
C10.0114 (3)0.0139 (3)0.0136 (3)0.0000 (2)0.0072 (2)0.0001 (2)
C20.0139 (3)0.0168 (3)0.0152 (3)0.0000 (2)0.0085 (2)0.0017 (2)
C30.0142 (3)0.0177 (3)0.0162 (3)0.0010 (2)0.0074 (2)0.0034 (2)
C40.0134 (3)0.0168 (3)0.0196 (3)0.0019 (2)0.0083 (2)0.0032 (2)
C50.0134 (3)0.0169 (3)0.0197 (3)0.0020 (2)0.0103 (2)0.0029 (2)
C60.0122 (3)0.0142 (3)0.0147 (3)0.0002 (2)0.0084 (2)0.0004 (2)
C70.0132 (3)0.0136 (3)0.0141 (3)−0.0003 (2)0.0081 (2)−0.0001 (2)
C80.0121 (3)0.0132 (3)0.0163 (3)0.0004 (2)0.0084 (2)0.0003 (2)
C90.0120 (3)0.0138 (3)0.0154 (3)−0.0003 (2)0.0087 (2)−0.0003 (2)
C100.0149 (3)0.0157 (3)0.0258 (3)0.0025 (2)0.0132 (3)0.0025 (3)
C110.0175 (3)0.0161 (3)0.0162 (3)0.0004 (2)0.0090 (2)0.0025 (2)
C120.0187 (3)0.0150 (3)0.0142 (3)−0.0020 (2)0.0091 (2)0.0007 (2)
C130.0193 (3)0.0173 (3)0.0167 (3)−0.0005 (2)0.0105 (3)0.0020 (2)
C140.0211 (3)0.0198 (3)0.0218 (3)−0.0012 (3)0.0136 (3)0.0011 (3)
C150.0261 (4)0.0216 (3)0.0209 (3)−0.0049 (3)0.0162 (3)−0.0001 (3)
C160.0277 (4)0.0224 (4)0.0189 (3)−0.0022 (3)0.0138 (3)0.0045 (3)
C170.0228 (4)0.0192 (3)0.0175 (3)0.0001 (3)0.0104 (3)0.0043 (3)
C180.0162 (3)0.0188 (3)0.0200 (3)0.0003 (2)0.0130 (3)0.0017 (2)
C190.0139 (3)0.0177 (3)0.0198 (3)0.0002 (2)0.0094 (3)0.0031 (2)
C200.0216 (4)0.0287 (4)0.0210 (4)−0.0013 (3)0.0070 (3)0.0022 (3)
C210.0255 (4)0.0260 (4)0.0297 (4)−0.0023 (3)0.0150 (4)0.0094 (3)
O1W0.0217 (3)0.0222 (3)0.0865 (8)0.0064 (3)0.0287 (4)0.0188 (4)
Cl1—C151.7430 (9)C11—H11A0.9300
N1—C71.3143 (10)C12—C171.3985 (11)
N1—C61.3842 (9)C12—C131.4032 (12)
N2—C101.3638 (10)C13—C141.3884 (11)
N2—C91.3782 (9)C13—H13A0.9300
N2—C181.4684 (10)C14—C151.3924 (12)
N3—C101.3210 (10)C14—H14A0.9300
N3—C81.3836 (10)C15—C161.3857 (14)
N4—N51.3622 (9)C16—C171.3955 (12)
N4—C71.3728 (10)C16—H16A0.9300
N4—H1N40.875 (18)C17—H17A0.9300
N5—C111.2845 (10)C18—C191.5330 (12)
C1—C21.4135 (10)C18—H18A0.9700
C1—C61.4267 (10)C18—H18B0.9700
C1—C91.4308 (10)C19—C201.5222 (12)
C2—C31.3793 (11)C19—C211.5233 (12)
C2—H2A0.9300C19—H19A0.9800
C3—C41.4072 (11)C20—H20A0.9600
C3—H3A0.9300C20—H20B0.9600
C4—C51.3783 (11)C20—H20C0.9600
C4—H4A0.9300C21—H21A0.9600
C5—C61.4142 (10)C21—H21B0.9600
C5—H5A0.9300C21—H21C0.9600
C7—C81.4259 (10)O1W—H1W10.8330
C8—C91.3872 (10)O1W—H2WA0.8554
C10—H10A0.9300O1W—H2WB0.8508
C11—C121.4665 (11)
C7—N1—C6119.13 (6)C17—C12—C11120.07 (7)
C10—N2—C9106.49 (6)C13—C12—C11121.10 (7)
C10—N2—C18124.26 (6)C14—C13—C12120.87 (7)
C9—N2—C18129.08 (6)C14—C13—H13A119.6
C10—N3—C8103.72 (6)C12—C13—H13A119.6
N5—N4—C7119.18 (6)C13—C14—C15118.96 (8)
N5—N4—H1N4121.7 (12)C13—C14—H14A120.5
C7—N4—H1N4119.0 (12)C15—C14—H14A120.5
C11—N5—N4117.46 (7)C16—C15—C14121.57 (8)
C2—C1—C6119.31 (6)C16—C15—Cl1119.88 (6)
C2—C1—C9126.97 (6)C14—C15—Cl1118.54 (7)
C6—C1—C9113.71 (6)C15—C16—C17118.91 (8)
C3—C2—C1120.60 (7)C15—C16—H16A120.5
C3—C2—H2A119.7C17—C16—H16A120.5
C1—C2—H2A119.7C16—C17—C12120.84 (8)
C2—C3—C4120.01 (7)C16—C17—H17A119.6
C2—C3—H3A120.0C12—C17—H17A119.6
C4—C3—H3A120.0N2—C18—C19112.26 (6)
C5—C4—C3120.59 (7)N2—C18—H18A109.2
C5—C4—H4A119.7C19—C18—H18A109.2
C3—C4—H4A119.7N2—C18—H18B109.2
C4—C5—C6120.65 (7)C19—C18—H18B109.2
C4—C5—H5A119.7H18A—C18—H18B107.9
C6—C5—H5A119.7C20—C19—C21111.16 (7)
N1—C6—C5116.55 (6)C20—C19—C18111.05 (7)
N1—C6—C1124.78 (6)C21—C19—C18108.91 (7)
C5—C6—C1118.67 (6)C20—C19—H19A108.5
N1—C7—N4120.12 (6)C21—C19—H19A108.5
N1—C7—C8121.23 (7)C18—C19—H19A108.5
N4—C7—C8118.64 (6)C19—C20—H20A109.5
N3—C8—C9111.13 (6)C19—C20—H20B109.5
N3—C8—C7129.05 (7)H20A—C20—H20B109.5
C9—C8—C7119.81 (6)C19—C20—H20C109.5
N2—C9—C8105.12 (6)H20A—C20—H20C109.5
N2—C9—C1133.65 (7)H20B—C20—H20C109.5
C8—C9—C1121.23 (6)C19—C21—H21A109.5
N3—C10—N2113.54 (7)C19—C21—H21B109.5
N3—C10—H10A123.2H21A—C21—H21B109.5
N2—C10—H10A123.2C19—C21—H21C109.5
N5—C11—C12119.30 (7)H21A—C21—H21C109.5
N5—C11—H11A120.3H21B—C21—H21C109.5
C12—C11—H11A120.3H1W1—O1W—H2WA110.7
C17—C12—C13118.81 (7)H1W1—O1W—H2WB107.9
C7—N4—N5—C11−178.12 (7)N3—C8—C9—N2−0.42 (9)
C6—C1—C2—C33.55 (11)C7—C8—C9—N2178.87 (7)
C9—C1—C2—C3−177.20 (7)N3—C8—C9—C1179.51 (7)
C1—C2—C3—C40.05 (12)C7—C8—C9—C1−1.21 (11)
C2—C3—C4—C5−2.71 (12)C2—C1—C9—N23.78 (14)
C3—C4—C5—C61.68 (12)C6—C1—C9—N2−176.94 (8)
C7—N1—C6—C5−177.76 (7)C2—C1—C9—C8−176.12 (7)
C7—N1—C6—C12.14 (11)C6—C1—C9—C83.17 (10)
C4—C5—C6—N1−178.17 (7)C8—N3—C10—N2−0.36 (9)
C4—C5—C6—C11.94 (11)C9—N2—C10—N30.12 (10)
C2—C1—C6—N1175.61 (7)C18—N2—C10—N3175.72 (7)
C9—C1—C6—N1−3.74 (10)N4—N5—C11—C12178.17 (7)
C2—C1—C6—C5−4.50 (11)N5—C11—C12—C17−174.05 (8)
C9—C1—C6—C5176.15 (7)N5—C11—C12—C134.30 (12)
C6—N1—C7—N4179.21 (7)C17—C12—C13—C141.54 (12)
C6—N1—C7—C80.24 (11)C11—C12—C13—C14−176.82 (8)
N5—N4—C7—N10.18 (11)C12—C13—C14—C150.15 (13)
N5—N4—C7—C8179.17 (7)C13—C14—C15—C16−1.62 (13)
C10—N3—C8—C90.48 (9)C13—C14—C15—Cl1177.25 (7)
C10—N3—C8—C7−178.72 (8)C14—C15—C16—C171.32 (14)
N1—C7—C8—N3178.48 (7)Cl1—C15—C16—C17−177.53 (7)
N4—C7—C8—N3−0.50 (12)C15—C16—C17—C120.44 (13)
N1—C7—C8—C9−0.66 (11)C13—C12—C17—C16−1.84 (12)
N4—C7—C8—C9−179.64 (7)C11—C12—C17—C16176.54 (8)
C10—N2—C9—C80.18 (8)C10—N2—C18—C19−105.84 (9)
C18—N2—C9—C8−175.14 (7)C9—N2—C18—C1968.72 (10)
C10—N2—C9—C1−179.73 (8)N2—C18—C19—C2062.01 (9)
C18—N2—C9—C14.95 (14)N2—C18—C19—C21−175.26 (7)
D—H···AD—HH···AD···AD—H···A
N4—H1N4···O1Wi0.874 (19)2.559 (18)3.2789 (13)140.2 (14)
O1W—H1W1···N1ii0.832.092.9178 (14)173
C10—H10A···O1Wiii0.932.523.3513 (16)149
C18—H18B···O1Wiii0.972.593.4776 (14)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H1N4⋯O1Wi0.874 (19)2.559 (18)3.2789 (13)140.2 (14)
O1W—H1W1⋯N1ii0.832.092.9178 (14)173
C10—H10A⋯O1Wiii0.932.523.3513 (16)149
C18—H18B⋯O1Wiii0.972.593.4776 (14)153

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  J Med Chem       Date:  1993-04-30       Impact factor: 7.446

6.  1-Isobutyl-N,N-dimethyl-1H-imidazo[4,5-c]quinolin-4-amine.

Authors:  Wan-Sin Loh; Hoong-Kun Fun; Reshma Kayarmar; S Viveka; G K Nagaraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

7.  4-Hydrazinyl-1-isobutyl-1H-imidazo[4,5-c]quinoline.

Authors:  Wan-Sin Loh; Hoong-Kun Fun; Reshma Kayarmar; S Viveka; G K Nagaraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  2 in total

1.  3-[(1-Isobutyl-1H-imidazo[4,5-c]quinolin-4-yl)amino]-benzoic acid.

Authors:  Hoong-Kun Fun; Tara Shahani; Reshma Kayarmar; G K Nagaraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30

2.  (E)-2-[2-(4-Chloro-benzyl-idene)hydrazin-1-yl]-4-{[3-(dimethyl-aza-nium-yl)prop-yl]amino}-quinazolin-1-ium bis-(perchlorate).

Authors:  Nan Jiang; Jian Zuo; Haiyan Wang; Ming Han; Xin Zhai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28
  2 in total

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