Literature DB >> 22590348

2,4-Diamino-6-methyl-1,3,5-triazin-1-ium hydrogen oxalate.

Leila Narimani1, Bohari M Yamin.   

Abstract

The title compound, C(4)H(8)N(5) (+)·C(2)HO(4) (-), was obtained from the reaction of oxalic acid and 2,4-diamino-6-methyl-1,3,5-triazine. The protonated triazine ring is essentially planar with a maximum deviation of 0.035 (1) Å, but the hydrogen oxalate anion is less planar, with a maximum deviation of 0.131 (1) Å for both carbonyl O atoms. In the crystal, the ions are linked by inter-molecular N-H⋯O, N-H⋯N, O-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional network. Weak π-π [centroid-centroid distance = 3.763 Å] and C-O⋯π inter-actions [O⋯centroid = 3.5300 (16) Å, C-O⋯centroid = 132.19 (10)°] are also present.

Entities:  

Year:  2012        PMID: 22590348      PMCID: PMC3344586          DOI: 10.1107/S1600536812016637

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data see: Allen et al. (1987 ▶) and for a description of the Cambridge Structural Database, see: Allen (2002 ▶). For background to triazine derivatives, see: Sebenik et al. (1989 ▶). For related structures, see: Kaczmarek et al. (2008 ▶); Xiao (2008 ▶); Fan et al. (2009 ▶); Qian & Huang (2010 ▶).

Experimental

Crystal data

C4H8N5 +·C2HO4 M = 215.18 Triclinic, a = 5.6208 (12) Å b = 7.9828 (17) Å c = 10.857 (2) Å α = 76.846 (4)° β = 75.882 (4)° γ = 75.954 (4)° V = 450.92 (17) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 298 K 0.50 × 0.22 × 0.19 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.935, T max = 0.974 5551 measured reflections 1959 independent reflections 1708 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.113 S = 1.03 1959 reflections 145 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812016637/zq2157sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016637/zq2157Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812016637/zq2157Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H8N5+·C2HO4Z = 2
Mr = 215.18F(000) = 224
Triclinic, P1Dx = 1.585 Mg m3
Hall symbol: -P 1Melting point = 492.2–492.5 K
a = 5.6208 (12) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.9828 (17) ÅCell parameters from 1963 reflections
c = 10.857 (2) Åθ = 1.9–27.0°
α = 76.846 (4)°µ = 0.13 mm1
β = 75.882 (4)°T = 298 K
γ = 75.954 (4)°Block, colourless
V = 450.92 (17) Å30.50 × 0.22 × 0.19 mm
Bruker SMART APEX CCD area-detector diffractometer1959 independent reflections
Radiation source: fine-focus sealed tube1708 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 83.66 pixels mm-1θmax = 27.0°, θmin = 1.9°
ω scanh = −7→7
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −10→10
Tmin = 0.935, Tmax = 0.974l = −13→13
5551 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0664P)2 + 0.0976P] where P = (Fo2 + 2Fc2)/3
1959 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.25 e Å3
1 restraintΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.01323 (19)0.22067 (16)1.09284 (10)0.0435 (3)
O21.20977 (17)0.36561 (14)0.91142 (9)0.0383 (3)
O30.8189 (2)0.38620 (18)0.80042 (10)0.0490 (3)
O40.60164 (18)0.30135 (15)0.99698 (10)0.0401 (3)
H40.476 (3)0.322 (3)0.964 (2)0.076 (7)*
N10.2651 (2)0.08398 (15)0.40173 (11)0.0342 (3)
N20.3693 (2)0.31924 (15)0.46944 (11)0.0326 (3)
N30.5937 (2)0.21615 (15)0.28003 (11)0.0324 (3)
H30.733 (4)0.221 (2)0.2103 (19)0.049 (5)*
N40.0411 (2)0.18887 (17)0.58245 (12)0.0421 (3)
H4D0.01020.25720.63770.051*
H4E−0.05060.11300.59220.051*
N50.7025 (2)0.43757 (17)0.34456 (12)0.0393 (3)
H5A0.68270.50640.39830.047*
H5B0.82060.44150.27710.047*
C10.4493 (3)0.09606 (17)0.30219 (13)0.0307 (3)
C20.2280 (3)0.20042 (18)0.48339 (13)0.0316 (3)
C30.5530 (3)0.32675 (18)0.36537 (12)0.0302 (3)
C40.5070 (3)−0.0268 (2)0.21033 (15)0.0400 (4)
H4A0.5078−0.14420.25740.060*
H4B0.6685−0.02040.15600.060*
H4C0.38220.00480.15800.060*
C51.0268 (2)0.30348 (18)0.98158 (13)0.0296 (3)
C60.8009 (2)0.33563 (18)0.91548 (13)0.0301 (3)
U11U22U33U12U13U23
O10.0288 (5)0.0646 (7)0.0332 (6)−0.0124 (5)−0.0051 (4)0.0009 (5)
O20.0237 (5)0.0565 (7)0.0344 (6)−0.0147 (4)−0.0014 (4)−0.0052 (5)
O30.0351 (6)0.0828 (9)0.0297 (6)−0.0157 (6)−0.0046 (4)−0.0093 (5)
O40.0234 (5)0.0622 (7)0.0351 (6)−0.0161 (5)−0.0038 (4)−0.0035 (5)
N10.0374 (7)0.0359 (6)0.0315 (6)−0.0161 (5)0.0015 (5)−0.0103 (5)
N20.0381 (6)0.0360 (6)0.0262 (6)−0.0158 (5)0.0009 (5)−0.0091 (5)
N30.0344 (6)0.0375 (6)0.0265 (6)−0.0140 (5)0.0022 (5)−0.0097 (5)
N40.0467 (7)0.0500 (8)0.0340 (7)−0.0264 (6)0.0091 (5)−0.0165 (6)
N50.0447 (7)0.0487 (7)0.0297 (6)−0.0263 (6)0.0048 (5)−0.0124 (5)
C10.0338 (7)0.0308 (6)0.0282 (7)−0.0090 (5)−0.0039 (5)−0.0061 (5)
C20.0353 (7)0.0343 (7)0.0263 (7)−0.0126 (6)−0.0019 (5)−0.0064 (5)
C30.0338 (7)0.0337 (7)0.0241 (6)−0.0117 (5)−0.0031 (5)−0.0045 (5)
C40.0471 (9)0.0389 (8)0.0360 (8)−0.0132 (6)0.0003 (6)−0.0147 (6)
C50.0222 (6)0.0375 (7)0.0291 (7)−0.0064 (5)−0.0002 (5)−0.0110 (5)
C60.0247 (6)0.0381 (7)0.0289 (7)−0.0084 (5)−0.0013 (5)−0.0103 (5)
O1—C51.2322 (17)N4—C21.3112 (18)
O2—C51.2560 (16)N4—H4D0.8600
O3—C61.2093 (17)N4—H4E0.8600
O4—C61.2913 (16)N5—C31.3104 (18)
O4—H40.831 (10)N5—H5A0.8600
N1—C11.3054 (18)N5—H5B0.8600
N1—C21.3727 (17)C1—C41.4812 (19)
N2—C31.3329 (17)C4—H4A0.9600
N2—C21.3400 (17)C4—H4B0.9600
N3—C11.3465 (17)C4—H4C0.9600
N3—C31.3643 (18)C5—C61.5476 (19)
N3—H30.950 (19)
C6—O4—H4113.8 (16)N2—C2—N1124.86 (12)
C1—N1—C2116.03 (12)N5—C3—N2120.67 (12)
C3—N2—C2116.42 (11)N5—C3—N3118.55 (12)
C1—N3—C3119.67 (12)N2—C3—N3120.76 (12)
C1—N3—H3122.3 (11)C1—C4—H4A109.5
C3—N3—H3117.8 (11)C1—C4—H4B109.5
C2—N4—H4D120.0H4A—C4—H4B109.5
C2—N4—H4E120.0C1—C4—H4C109.5
H4D—N4—H4E120.0H4A—C4—H4C109.5
C3—N5—H5A120.0H4B—C4—H4C109.5
C3—N5—H5B120.0O1—C5—O2127.05 (13)
H5A—N5—H5B120.0O1—C5—C6118.95 (12)
N1—C1—N3122.20 (12)O2—C5—C6113.99 (12)
N1—C1—C4119.85 (12)O3—C6—O4126.24 (13)
N3—C1—C4117.95 (12)O3—C6—C5121.73 (12)
N4—C2—N2119.38 (12)O4—C6—C5112.03 (11)
N4—C2—N1115.75 (12)
C2—N1—C1—N3−0.4 (2)C2—N2—C3—N5−179.22 (13)
C2—N1—C1—C4178.65 (13)C2—N2—C3—N3−1.0 (2)
C3—N3—C1—N11.8 (2)C1—N3—C3—N5177.20 (13)
C3—N3—C1—C4−177.27 (13)C1—N3—C3—N2−1.1 (2)
C3—N2—C2—N4−178.67 (14)O1—C5—C6—O3−166.01 (14)
C3—N2—C2—N12.5 (2)O2—C5—C6—O313.0 (2)
C1—N1—C2—N4179.32 (13)O1—C5—C6—O413.65 (18)
C1—N1—C2—N2−1.8 (2)O2—C5—C6—O4−167.33 (12)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1i0.95 (2)1.77 (2)2.7134 (17)174 (2)
N3—H3···O4i0.95 (2)2.50 (2)2.9841 (17)111.7 (16)
O4—H4···O20.83 (2)1.66 (2)2.4921 (16)175 (2)
N4—H4D···O3ii0.862.172.9902 (19)160
N4—H4E···N1iii0.862.183.0399 (19)174
N5—H5A···N2iv0.862.143.0027 (19)179
N5—H5B···O2v0.862.282.8558 (17)124
N5—H5B···O3v0.862.593.2337 (19)133
C4—H4C···O1vi0.962.493.339 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O1i0.95 (2)1.77 (2)2.7134 (17)174 (2)
N3—H3⋯O4i0.95 (2)2.50 (2)2.9841 (17)111.7 (16)
O4—H4⋯O20.83 (2)1.66 (2)2.4921 (16)175 (2)
N4—H4D⋯O3ii0.862.172.9902 (19)160
N4—H4E⋯N1iii0.862.183.0399 (19)174
N5—H5A⋯N2iv0.862.143.0027 (19)179
N5—H5B⋯O2v0.862.282.8558 (17)124
N5—H5B⋯O3v0.862.593.2337 (19)133
C4—H4C⋯O1vi0.962.493.339 (2)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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