| Literature DB >> 22590348 |
Leila Narimani1, Bohari M Yamin.
Abstract
The title compound, C(4)H(8)N(5) (+)·C(2)HO(4) (-), was obtained from the reaction of oxalic acid and 2,4-diamino-6-methyl-1,3,5-triazine. The protonated triazine ring is essentially planar with a maximum deviation of 0.035 (1) Å, but the hydrogen oxalate anion is less planar, with a maximum deviation of 0.131 (1) Å for both carbonyl O atoms. In the crystal, the ions are linked by inter-molecular N-H⋯O, N-H⋯N, O-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional network. Weak π-π [centroid-centroid distance = 3.763 Å] and C-O⋯π inter-actions [O⋯centroid = 3.5300 (16) Å, C-O⋯centroid = 132.19 (10)°] are also present.Entities:
Year: 2012 PMID: 22590348 PMCID: PMC3344586 DOI: 10.1107/S1600536812016637
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H8N5+·C2HO4− | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point = 492.2–492.5 K |
| Mo | |
| Cell parameters from 1963 reflections | |
| θ = 1.9–27.0° | |
| α = 76.846 (4)° | µ = 0.13 mm−1 |
| β = 75.882 (4)° | |
| γ = 75.954 (4)° | Block, colourless |
| 0.50 × 0.22 × 0.19 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 1959 independent reflections |
| Radiation source: fine-focus sealed tube | 1708 reflections with |
| Graphite monochromator | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 27.0°, θmin = 1.9° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 5551 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1959 reflections | (Δ/σ)max = 0.001 |
| 145 parameters | Δρmax = 0.25 e Å−3 |
| 1 restraint | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 1.01323 (19) | 0.22067 (16) | 1.09284 (10) | 0.0435 (3) | |
| O2 | 1.20977 (17) | 0.36561 (14) | 0.91142 (9) | 0.0383 (3) | |
| O3 | 0.8189 (2) | 0.38620 (18) | 0.80042 (10) | 0.0490 (3) | |
| O4 | 0.60164 (18) | 0.30135 (15) | 0.99698 (10) | 0.0401 (3) | |
| H4 | 0.476 (3) | 0.322 (3) | 0.964 (2) | 0.076 (7)* | |
| N1 | 0.2651 (2) | 0.08398 (15) | 0.40173 (11) | 0.0342 (3) | |
| N2 | 0.3693 (2) | 0.31924 (15) | 0.46944 (11) | 0.0326 (3) | |
| N3 | 0.5937 (2) | 0.21615 (15) | 0.28003 (11) | 0.0324 (3) | |
| H3 | 0.733 (4) | 0.221 (2) | 0.2103 (19) | 0.049 (5)* | |
| N4 | 0.0411 (2) | 0.18887 (17) | 0.58245 (12) | 0.0421 (3) | |
| H4D | 0.0102 | 0.2572 | 0.6377 | 0.051* | |
| H4E | −0.0506 | 0.1130 | 0.5922 | 0.051* | |
| N5 | 0.7025 (2) | 0.43757 (17) | 0.34456 (12) | 0.0393 (3) | |
| H5A | 0.6827 | 0.5064 | 0.3983 | 0.047* | |
| H5B | 0.8206 | 0.4415 | 0.2771 | 0.047* | |
| C1 | 0.4493 (3) | 0.09606 (17) | 0.30219 (13) | 0.0307 (3) | |
| C2 | 0.2280 (3) | 0.20042 (18) | 0.48339 (13) | 0.0316 (3) | |
| C3 | 0.5530 (3) | 0.32675 (18) | 0.36537 (12) | 0.0302 (3) | |
| C4 | 0.5070 (3) | −0.0268 (2) | 0.21033 (15) | 0.0400 (4) | |
| H4A | 0.5078 | −0.1442 | 0.2574 | 0.060* | |
| H4B | 0.6685 | −0.0204 | 0.1560 | 0.060* | |
| H4C | 0.3822 | 0.0048 | 0.1580 | 0.060* | |
| C5 | 1.0268 (2) | 0.30348 (18) | 0.98158 (13) | 0.0296 (3) | |
| C6 | 0.8009 (2) | 0.33563 (18) | 0.91548 (13) | 0.0301 (3) |
| O1 | 0.0288 (5) | 0.0646 (7) | 0.0332 (6) | −0.0124 (5) | −0.0051 (4) | 0.0009 (5) |
| O2 | 0.0237 (5) | 0.0565 (7) | 0.0344 (6) | −0.0147 (4) | −0.0014 (4) | −0.0052 (5) |
| O3 | 0.0351 (6) | 0.0828 (9) | 0.0297 (6) | −0.0157 (6) | −0.0046 (4) | −0.0093 (5) |
| O4 | 0.0234 (5) | 0.0622 (7) | 0.0351 (6) | −0.0161 (5) | −0.0038 (4) | −0.0035 (5) |
| N1 | 0.0374 (7) | 0.0359 (6) | 0.0315 (6) | −0.0161 (5) | 0.0015 (5) | −0.0103 (5) |
| N2 | 0.0381 (6) | 0.0360 (6) | 0.0262 (6) | −0.0158 (5) | 0.0009 (5) | −0.0091 (5) |
| N3 | 0.0344 (6) | 0.0375 (6) | 0.0265 (6) | −0.0140 (5) | 0.0022 (5) | −0.0097 (5) |
| N4 | 0.0467 (7) | 0.0500 (8) | 0.0340 (7) | −0.0264 (6) | 0.0091 (5) | −0.0165 (6) |
| N5 | 0.0447 (7) | 0.0487 (7) | 0.0297 (6) | −0.0263 (6) | 0.0048 (5) | −0.0124 (5) |
| C1 | 0.0338 (7) | 0.0308 (6) | 0.0282 (7) | −0.0090 (5) | −0.0039 (5) | −0.0061 (5) |
| C2 | 0.0353 (7) | 0.0343 (7) | 0.0263 (7) | −0.0126 (6) | −0.0019 (5) | −0.0064 (5) |
| C3 | 0.0338 (7) | 0.0337 (7) | 0.0241 (6) | −0.0117 (5) | −0.0031 (5) | −0.0045 (5) |
| C4 | 0.0471 (9) | 0.0389 (8) | 0.0360 (8) | −0.0132 (6) | 0.0003 (6) | −0.0147 (6) |
| C5 | 0.0222 (6) | 0.0375 (7) | 0.0291 (7) | −0.0064 (5) | −0.0002 (5) | −0.0110 (5) |
| C6 | 0.0247 (6) | 0.0381 (7) | 0.0289 (7) | −0.0084 (5) | −0.0013 (5) | −0.0103 (5) |
| O1—C5 | 1.2322 (17) | N4—C2 | 1.3112 (18) |
| O2—C5 | 1.2560 (16) | N4—H4D | 0.8600 |
| O3—C6 | 1.2093 (17) | N4—H4E | 0.8600 |
| O4—C6 | 1.2913 (16) | N5—C3 | 1.3104 (18) |
| O4—H4 | 0.831 (10) | N5—H5A | 0.8600 |
| N1—C1 | 1.3054 (18) | N5—H5B | 0.8600 |
| N1—C2 | 1.3727 (17) | C1—C4 | 1.4812 (19) |
| N2—C3 | 1.3329 (17) | C4—H4A | 0.9600 |
| N2—C2 | 1.3400 (17) | C4—H4B | 0.9600 |
| N3—C1 | 1.3465 (17) | C4—H4C | 0.9600 |
| N3—C3 | 1.3643 (18) | C5—C6 | 1.5476 (19) |
| N3—H3 | 0.950 (19) | ||
| C6—O4—H4 | 113.8 (16) | N2—C2—N1 | 124.86 (12) |
| C1—N1—C2 | 116.03 (12) | N5—C3—N2 | 120.67 (12) |
| C3—N2—C2 | 116.42 (11) | N5—C3—N3 | 118.55 (12) |
| C1—N3—C3 | 119.67 (12) | N2—C3—N3 | 120.76 (12) |
| C1—N3—H3 | 122.3 (11) | C1—C4—H4A | 109.5 |
| C3—N3—H3 | 117.8 (11) | C1—C4—H4B | 109.5 |
| C2—N4—H4D | 120.0 | H4A—C4—H4B | 109.5 |
| C2—N4—H4E | 120.0 | C1—C4—H4C | 109.5 |
| H4D—N4—H4E | 120.0 | H4A—C4—H4C | 109.5 |
| C3—N5—H5A | 120.0 | H4B—C4—H4C | 109.5 |
| C3—N5—H5B | 120.0 | O1—C5—O2 | 127.05 (13) |
| H5A—N5—H5B | 120.0 | O1—C5—C6 | 118.95 (12) |
| N1—C1—N3 | 122.20 (12) | O2—C5—C6 | 113.99 (12) |
| N1—C1—C4 | 119.85 (12) | O3—C6—O4 | 126.24 (13) |
| N3—C1—C4 | 117.95 (12) | O3—C6—C5 | 121.73 (12) |
| N4—C2—N2 | 119.38 (12) | O4—C6—C5 | 112.03 (11) |
| N4—C2—N1 | 115.75 (12) | ||
| C2—N1—C1—N3 | −0.4 (2) | C2—N2—C3—N5 | −179.22 (13) |
| C2—N1—C1—C4 | 178.65 (13) | C2—N2—C3—N3 | −1.0 (2) |
| C3—N3—C1—N1 | 1.8 (2) | C1—N3—C3—N5 | 177.20 (13) |
| C3—N3—C1—C4 | −177.27 (13) | C1—N3—C3—N2 | −1.1 (2) |
| C3—N2—C2—N4 | −178.67 (14) | O1—C5—C6—O3 | −166.01 (14) |
| C3—N2—C2—N1 | 2.5 (2) | O2—C5—C6—O3 | 13.0 (2) |
| C1—N1—C2—N4 | 179.32 (13) | O1—C5—C6—O4 | 13.65 (18) |
| C1—N1—C2—N2 | −1.8 (2) | O2—C5—C6—O4 | −167.33 (12) |
| H··· | ||||
| N3—H3···O1i | 0.95 (2) | 1.77 (2) | 2.7134 (17) | 174 (2) |
| N3—H3···O4i | 0.95 (2) | 2.50 (2) | 2.9841 (17) | 111.7 (16) |
| O4—H4···O2 | 0.83 (2) | 1.66 (2) | 2.4921 (16) | 175 (2) |
| N4—H4 | 0.86 | 2.17 | 2.9902 (19) | 160 |
| N4—H4 | 0.86 | 2.18 | 3.0399 (19) | 174 |
| N5—H5 | 0.86 | 2.14 | 3.0027 (19) | 179 |
| N5—H5 | 0.86 | 2.28 | 2.8558 (17) | 124 |
| N5—H5 | 0.86 | 2.59 | 3.2337 (19) | 133 |
| C4—H4 | 0.96 | 2.49 | 3.339 (2) | 148 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3⋯O1i | 0.95 (2) | 1.77 (2) | 2.7134 (17) | 174 (2) |
| N3—H3⋯O4i | 0.95 (2) | 2.50 (2) | 2.9841 (17) | 111.7 (16) |
| O4—H4⋯O2 | 0.83 (2) | 1.66 (2) | 2.4921 (16) | 175 (2) |
| N4—H4 | 0.86 | 2.17 | 2.9902 (19) | 160 |
| N4—H4 | 0.86 | 2.18 | 3.0399 (19) | 174 |
| N5—H5 | 0.86 | 2.14 | 3.0027 (19) | 179 |
| N5—H5 | 0.86 | 2.28 | 2.8558 (17) | 124 |
| N5—H5 | 0.86 | 2.59 | 3.2337 (19) | 133 |
| C4—H4 | 0.96 | 2.49 | 3.339 (2) | 148 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .