| Literature DB >> 21201439 |
Abstract
The crystal structure of the title compound, C(4)H(7)N(5)·C(2)H(6)O, is determined by extensive hydrogen bonding. A sequence of dimeric associations, formed by N-H(amino)⋯N(ring), connects the triazine rings into a mol-ecular tape. Mol-ecules are linked into a supra-molecular structure by N-H⋯O and O-H⋯O hydrogen bonds. The asymmetric unit consists of two formula units.Entities:
Year: 2008 PMID: 21201439 PMCID: PMC2960281 DOI: 10.1107/S1600536808000159
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H7N5·C2H6O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3111 reflections | |
| θ = 1.7–25.0º | |
| µ = 0.09 mm−1 | |
| α = 88.703 (1)º | |
| β = 87.614 (2)º | Block, colorless |
| γ = 76.668 (2)º | 0.34 × 0.26 × 0.21 mm |
| Bruker CCD area-detector diffractometer | 3111 independent reflections |
| Radiation source: fine-focus sealed tube | 2619 reflections with |
| Monochromator: graphite | |
| θmax = 25.0º | |
| φ and ω scans | θmin = 1.7º |
| Absorption correction: multi-scan(SADABS; Bruker, 2005) | |
| 7627 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 3111 reflections | Δρmax = 0.25 e Å−3 |
| 223 parameters | Δρmin = −0.19 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.0454 (2) | 0.41963 (19) | 0.15635 (15) | 0.0388 (4) | |
| H1A | −0.0653 | 0.4778 | 0.1527 | 0.058* | |
| H1B | 0.0892 | 0.3946 | 0.0817 | 0.058* | |
| H1C | 0.1110 | 0.4770 | 0.1920 | 0.058* | |
| C2 | 0.04756 (19) | 0.27874 (17) | 0.22268 (13) | 0.0290 (4) | |
| C3 | −0.07229 (18) | 0.14537 (17) | 0.34835 (13) | 0.0258 (3) | |
| C4 | 0.18337 (18) | 0.04532 (17) | 0.27722 (13) | 0.0268 (3) | |
| C5 | 0.6644 (3) | 0.2978 (3) | 0.0124 (2) | 0.0651 (6) | |
| H5A | 0.7394 | 0.2012 | 0.0089 | 0.098* | |
| H5B | 0.7212 | 0.3716 | 0.0348 | 0.098* | |
| H5C | 0.6200 | 0.3244 | −0.0602 | 0.098* | |
| C6 | 0.5286 (2) | 0.2917 (2) | 0.09584 (17) | 0.0486 (5) | |
| H6A | 0.5730 | 0.2628 | 0.1691 | 0.058* | |
| H6B | 0.4548 | 0.3900 | 0.1019 | 0.058* | |
| C7 | 0.3737 (2) | 0.18852 (18) | 0.49621 (15) | 0.0342 (4) | |
| H7A | 0.4172 | 0.1132 | 0.4412 | 0.051* | |
| H7B | 0.2683 | 0.1765 | 0.5241 | 0.051* | |
| H7C | 0.4469 | 0.1780 | 0.5572 | 0.051* | |
| C8 | 0.35597 (18) | 0.34072 (16) | 0.44340 (12) | 0.0254 (3) | |
| C9 | 0.47170 (18) | 0.50943 (16) | 0.34763 (12) | 0.0244 (3) | |
| C10 | 0.20147 (18) | 0.56977 (16) | 0.39979 (12) | 0.0255 (3) | |
| N1 | 0.05944 (15) | 0.02890 (14) | 0.34824 (11) | 0.0279 (3) | |
| N2 | 0.18531 (16) | 0.17023 (15) | 0.21443 (11) | 0.0299 (3) | |
| N3 | −0.08554 (15) | 0.27267 (14) | 0.28518 (11) | 0.0284 (3) | |
| N4 | −0.20112 (16) | 0.13534 (15) | 0.41484 (11) | 0.0323 (3) | |
| H4A | −0.1984 | 0.0563 | 0.4559 | 0.039* | |
| H4B | −0.2871 | 0.2079 | 0.4167 | 0.039* | |
| N6 | 0.20797 (15) | 0.43256 (14) | 0.44771 (11) | 0.0273 (3) | |
| N7 | 0.49186 (15) | 0.37128 (13) | 0.39648 (10) | 0.0268 (3) | |
| N8 | 0.32886 (15) | 0.61343 (14) | 0.34805 (11) | 0.0274 (3) | |
| N9 | 0.05530 (15) | 0.66659 (15) | 0.40412 (12) | 0.0336 (3) | |
| H9A | 0.0442 | 0.7546 | 0.3742 | 0.040* | |
| H9B | −0.0276 | 0.6409 | 0.4368 | 0.040* | |
| N10 | 0.60412 (15) | 0.54140 (15) | 0.29698 (11) | 0.0309 (3) | |
| H10A | 0.5979 | 0.6276 | 0.2650 | 0.037* | |
| H10B | 0.6959 | 0.4759 | 0.2962 | 0.037* | |
| O1 | 0.44204 (16) | 0.18580 (16) | 0.06094 (10) | 0.0475 (4) | |
| H1 | 0.3607 | 0.1897 | 0.1024 | 0.071* | |
| C11 | 0.0989 (3) | 0.1326 (3) | 0.89654 (19) | 0.0599 (6) | |
| H11A | 0.1324 | 0.1124 | 0.9725 | 0.090* | |
| H11B | 0.0321 | 0.0655 | 0.8769 | 0.090* | |
| H11C | 0.0370 | 0.2344 | 0.8900 | 0.090* | |
| C12 | 0.2460 (2) | 0.1100 (2) | 0.81971 (17) | 0.0495 (5) | |
| H12A | 0.3036 | 0.0053 | 0.8237 | 0.059* | |
| H12B | 0.2103 | 0.1310 | 0.7434 | 0.059* | |
| N5 | 0.31467 (16) | −0.06868 (15) | 0.26948 (12) | 0.0353 (3) | |
| H5D | 0.3180 | −0.1490 | 0.3091 | 0.042* | |
| H5E | 0.3961 | −0.0619 | 0.2249 | 0.042* | |
| O2 | 0.35702 (16) | 0.19983 (16) | 0.84251 (11) | 0.0461 (3) | |
| H2 | 0.3769 | 0.1931 | 0.9095 | 0.069* |
| C1 | 0.0392 (10) | 0.0326 (9) | 0.0423 (10) | −0.0051 (7) | 0.0017 (8) | 0.0095 (8) |
| C2 | 0.0299 (8) | 0.0272 (8) | 0.0294 (8) | −0.0059 (7) | −0.0023 (6) | 0.0018 (6) |
| C3 | 0.0241 (8) | 0.0242 (8) | 0.0282 (8) | −0.0041 (6) | −0.0011 (6) | −0.0001 (6) |
| C4 | 0.0250 (8) | 0.0267 (8) | 0.0281 (8) | −0.0051 (6) | −0.0004 (6) | 0.0010 (6) |
| C5 | 0.0531 (13) | 0.0762 (16) | 0.0747 (16) | −0.0344 (12) | 0.0045 (11) | 0.0046 (12) |
| C6 | 0.0485 (11) | 0.0488 (11) | 0.0516 (12) | −0.0174 (9) | 0.0003 (9) | −0.0063 (9) |
| C7 | 0.0298 (9) | 0.0250 (8) | 0.0454 (10) | −0.0028 (7) | 0.0032 (7) | 0.0040 (7) |
| C8 | 0.0248 (8) | 0.0233 (8) | 0.0269 (8) | −0.0032 (6) | 0.0004 (6) | −0.0019 (6) |
| C9 | 0.0251 (8) | 0.0230 (7) | 0.0242 (8) | −0.0037 (6) | 0.0001 (6) | −0.0011 (6) |
| C10 | 0.0237 (8) | 0.0244 (8) | 0.0270 (8) | −0.0028 (6) | −0.0012 (6) | −0.0002 (6) |
| N1 | 0.0247 (7) | 0.0251 (7) | 0.0313 (7) | −0.0019 (5) | 0.0038 (5) | 0.0036 (5) |
| N2 | 0.0293 (7) | 0.0285 (7) | 0.0311 (7) | −0.0062 (6) | 0.0035 (5) | 0.0031 (6) |
| N3 | 0.0257 (7) | 0.0258 (7) | 0.0321 (7) | −0.0030 (5) | 0.0003 (5) | 0.0039 (5) |
| N4 | 0.0258 (7) | 0.0250 (7) | 0.0419 (8) | 0.0007 (5) | 0.0089 (6) | 0.0058 (6) |
| N6 | 0.0237 (7) | 0.0234 (7) | 0.0334 (7) | −0.0032 (5) | 0.0008 (5) | 0.0007 (5) |
| N7 | 0.0241 (7) | 0.0228 (7) | 0.0312 (7) | −0.0013 (5) | 0.0016 (5) | 0.0015 (5) |
| N8 | 0.0251 (7) | 0.0239 (7) | 0.0309 (7) | −0.0016 (5) | 0.0009 (5) | 0.0026 (5) |
| N9 | 0.0223 (7) | 0.0269 (7) | 0.0478 (9) | 0.0005 (5) | 0.0038 (6) | 0.0078 (6) |
| N10 | 0.0237 (7) | 0.0253 (7) | 0.0411 (8) | −0.0017 (5) | 0.0039 (6) | 0.0054 (6) |
| O1 | 0.0477 (8) | 0.0614 (9) | 0.0398 (7) | −0.0274 (7) | 0.0112 (6) | −0.0083 (6) |
| C11 | 0.0513 (12) | 0.0746 (15) | 0.0606 (14) | −0.0303 (11) | 0.0095 (10) | −0.0034 (11) |
| C12 | 0.0453 (11) | 0.0601 (13) | 0.0463 (11) | −0.0190 (10) | 0.0023 (9) | −0.0044 (9) |
| N5 | 0.0260 (7) | 0.0298 (7) | 0.0455 (8) | 0.0005 (6) | 0.0105 (6) | 0.0072 (6) |
| O2 | 0.0461 (8) | 0.0581 (8) | 0.0391 (7) | −0.0241 (6) | 0.0010 (6) | 0.0112 (6) |
| C1—C2 | 1.494 (2) | C8—N7 | 1.3327 (19) |
| C1—H1A | 0.9600 | C9—N10 | 1.3300 (19) |
| C1—H1B | 0.9600 | C9—N8 | 1.3471 (19) |
| C1—H1C | 0.9600 | C9—N7 | 1.3571 (19) |
| C2—N3 | 1.327 (2) | C10—N9 | 1.3364 (19) |
| C2—N2 | 1.340 (2) | C10—N8 | 1.3459 (19) |
| C3—N4 | 1.332 (2) | C10—N6 | 1.3580 (19) |
| C3—N1 | 1.3466 (19) | N4—H4A | 0.8600 |
| C3—N3 | 1.3576 (19) | N4—H4B | 0.8600 |
| C4—N5 | 1.332 (2) | N9—H9A | 0.8600 |
| C4—N1 | 1.346 (2) | N9—H9B | 0.8600 |
| C4—N2 | 1.355 (2) | N10—H10A | 0.8600 |
| C5—C6 | 1.490 (3) | N10—H10B | 0.8600 |
| C5—H5A | 0.9600 | O1—H1 | 0.8200 |
| C5—H5B | 0.9600 | C11—C12 | 1.482 (3) |
| C5—H5C | 0.9600 | C11—H11A | 0.9600 |
| C6—O1 | 1.417 (2) | C11—H11B | 0.9600 |
| C6—H6A | 0.9700 | C11—H11C | 0.9600 |
| C6—H6B | 0.9700 | C12—O2 | 1.415 (2) |
| C7—C8 | 1.494 (2) | C12—H12A | 0.9700 |
| C7—H7A | 0.9600 | C12—H12B | 0.9700 |
| C7—H7B | 0.9600 | N5—H5D | 0.8600 |
| C7—H7C | 0.9600 | N5—H5E | 0.8600 |
| C8—N6 | 1.3285 (19) | O2—H2 | 0.8200 |
| C2—C1—H1A | 109.5 | N10—C9—N7 | 116.38 (13) |
| C2—C1—H1B | 109.5 | N8—C9—N7 | 124.41 (13) |
| H1A—C1—H1B | 109.5 | N9—C10—N8 | 118.57 (13) |
| C2—C1—H1C | 109.5 | N9—C10—N6 | 116.26 (13) |
| H1A—C1—H1C | 109.5 | N8—C10—N6 | 125.17 (13) |
| H1B—C1—H1C | 109.5 | C4—N1—C3 | 114.56 (13) |
| N3—C2—N2 | 125.90 (14) | C2—N2—C4 | 114.89 (13) |
| N3—C2—C1 | 117.42 (14) | C2—N3—C3 | 114.50 (13) |
| N2—C2—C1 | 116.68 (14) | C3—N4—H4A | 120.0 |
| N4—C3—N1 | 117.82 (13) | C3—N4—H4B | 120.0 |
| N4—C3—N3 | 116.89 (13) | H4A—N4—H4B | 120.0 |
| N1—C3—N3 | 125.28 (13) | C8—N6—C10 | 114.35 (12) |
| N5—C4—N1 | 117.59 (14) | C8—N7—C9 | 114.99 (12) |
| N5—C4—N2 | 117.68 (13) | C10—N8—C9 | 114.81 (12) |
| N1—C4—N2 | 124.72 (14) | C10—N9—H9A | 120.0 |
| C6—C5—H5A | 109.5 | C10—N9—H9B | 120.0 |
| C6—C5—H5B | 109.5 | H9A—N9—H9B | 120.0 |
| H5A—C5—H5B | 109.5 | C9—N10—H10A | 120.0 |
| C6—C5—H5C | 109.5 | C9—N10—H10B | 120.0 |
| H5A—C5—H5C | 109.5 | H10A—N10—H10B | 120.0 |
| H5B—C5—H5C | 109.5 | C6—O1—H1 | 109.5 |
| O1—C6—C5 | 109.36 (17) | C12—C11—H11A | 109.5 |
| O1—C6—H6A | 109.8 | C12—C11—H11B | 109.5 |
| C5—C6—H6A | 109.8 | H11A—C11—H11B | 109.5 |
| O1—C6—H6B | 109.8 | C12—C11—H11C | 109.5 |
| C5—C6—H6B | 109.8 | H11A—C11—H11C | 109.5 |
| H6A—C6—H6B | 108.3 | H11B—C11—H11C | 109.5 |
| C8—C7—H7A | 109.5 | O2—C12—C11 | 114.80 (17) |
| C8—C7—H7B | 109.5 | O2—C12—H12A | 108.6 |
| H7A—C7—H7B | 109.5 | C11—C12—H12A | 108.6 |
| C8—C7—H7C | 109.5 | O2—C12—H12B | 108.6 |
| H7A—C7—H7C | 109.5 | C11—C12—H12B | 108.6 |
| H7B—C7—H7C | 109.5 | H12A—C12—H12B | 107.5 |
| N6—C8—N7 | 126.22 (13) | C4—N5—H5D | 120.0 |
| N6—C8—C7 | 117.53 (13) | C4—N5—H5E | 120.0 |
| N7—C8—C7 | 116.25 (13) | H5D—N5—H5E | 120.0 |
| N10—C9—N8 | 119.21 (13) | C12—O2—H2 | 109.5 |
| N5—C4—N1—C3 | −177.19 (14) | N7—C8—N6—C10 | −0.8 (2) |
| N2—C4—N1—C3 | 3.9 (2) | C7—C8—N6—C10 | 178.93 (13) |
| N4—C3—N1—C4 | 178.53 (14) | N9—C10—N6—C8 | −178.84 (13) |
| N3—C3—N1—C4 | −0.9 (2) | N8—C10—N6—C8 | 2.1 (2) |
| N3—C2—N2—C4 | −0.2 (2) | N6—C8—N7—C9 | −1.2 (2) |
| C1—C2—N2—C4 | 178.97 (14) | C7—C8—N7—C9 | 179.03 (13) |
| N5—C4—N2—C2 | 177.66 (14) | N10—C9—N7—C8 | −177.94 (13) |
| N1—C4—N2—C2 | −3.4 (2) | N8—C9—N7—C8 | 2.4 (2) |
| N2—C2—N3—C3 | 2.9 (2) | N9—C10—N8—C9 | 179.85 (13) |
| C1—C2—N3—C3 | −176.34 (14) | N6—C10—N8—C9 | −1.1 (2) |
| N4—C3—N3—C2 | 178.33 (14) | N10—C9—N8—C10 | 179.00 (13) |
| N1—C3—N3—C2 | −2.3 (2) | N7—C9—N8—C10 | −1.3 (2) |
| H··· | ||||
| N4—H4B···N7i | 0.86 | 2.11 | 2.9666 (18) | 171 |
| N5—H5D···N8ii | 0.86 | 2.19 | 3.0132 (19) | 159 |
| N5—H5E···O2iii | 0.86 | 2.29 | 3.0071 (19) | 142 |
| N10—H10A···O2iv | 0.86 | 2.10 | 2.9337 (18) | 163 |
| O2—H2···O1v | 0.82 | 1.90 | 2.7185 (18) | 174 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4 | 0.86 | 2.11 | 2.9666 (18) | 171 |
| N5—H5 | 0.86 | 2.19 | 3.0132 (19) | 159 |
| N5—H5 | 0.86 | 2.29 | 3.0071 (19) | 142 |
| N10—H10 | 0.86 | 2.10 | 2.9337 (18) | 163 |
| O2—H2⋯O1v | 0.82 | 1.90 | 2.7185 (18) | 174 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .