Literature DB >> 21201439

2,4-Diamino-6-methyl-1,3,5-triazine ethanol solvate.

Zun-Hong Xiao1.   

Abstract

The crystal structure of the title compound, C(4)H(7)N(5)·C(2)H(6)O, is determined by extensive hydrogen bonding. A sequence of dimeric associations, formed by N-H(amino)⋯N(ring), connects the triazine rings into a mol-ecular tape. Mol-ecules are linked into a supra-molecular structure by N-H⋯O and O-H⋯O hydrogen bonds. The asymmetric unit consists of two formula units.

Entities:  

Year:  2008        PMID: 21201439      PMCID: PMC2960281          DOI: 10.1107/S1600536808000159

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Sebenik et al. (1989 ▶); Tashiro & Oiwa (1981 ▶).

Experimental

Crystal data

C4H7N5·C2H6O M = 171.21 Triclinic, a = 8.3860 (6) Å b = 9.1514 (6) Å c = 11.9104 (9) Å α = 88.703 (1)° β = 87.614 (2)° γ = 76.668 (2)° V = 888.56 (11) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 273 (2) K 0.34 × 0.26 × 0.21 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.975, T max = 0.985 7627 measured reflections 3111 independent reflections 2619 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.118 S = 1.07 3111 reflections 223 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808000159/bq2061sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808000159/bq2061Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H7N5·C2H6OZ = 4
Mr = 171.21F000 = 368.0
Triclinic, P1Dx = 1.280 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.3860 (6) ÅCell parameters from 3111 reflections
b = 9.1514 (6) Åθ = 1.7–25.0º
c = 11.9104 (9) ŵ = 0.09 mm1
α = 88.703 (1)ºT = 273 (2) K
β = 87.614 (2)ºBlock, colorless
γ = 76.668 (2)º0.34 × 0.26 × 0.21 mm
V = 888.56 (11) Å3
Bruker CCD area-detector diffractometer3111 independent reflections
Radiation source: fine-focus sealed tube2619 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.017
T = 273(2) Kθmax = 25.0º
φ and ω scansθmin = 1.7º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −9→9
Tmin = 0.975, Tmax = 0.985k = −10→10
7627 measured reflectionsl = −12→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.118  w = 1/[σ2(Fo2) + (0.0597P)2 + 0.2811P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3111 reflectionsΔρmax = 0.25 e Å3
223 parametersΔρmin = −0.19 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0454 (2)0.41963 (19)0.15635 (15)0.0388 (4)
H1A−0.06530.47780.15270.058*
H1B0.08920.39460.08170.058*
H1C0.11100.47700.19200.058*
C20.04756 (19)0.27874 (17)0.22268 (13)0.0290 (4)
C3−0.07229 (18)0.14537 (17)0.34835 (13)0.0258 (3)
C40.18337 (18)0.04532 (17)0.27722 (13)0.0268 (3)
C50.6644 (3)0.2978 (3)0.0124 (2)0.0651 (6)
H5A0.73940.20120.00890.098*
H5B0.72120.37160.03480.098*
H5C0.62000.3244−0.06020.098*
C60.5286 (2)0.2917 (2)0.09584 (17)0.0486 (5)
H6A0.57300.26280.16910.058*
H6B0.45480.39000.10190.058*
C70.3737 (2)0.18852 (18)0.49621 (15)0.0342 (4)
H7A0.41720.11320.44120.051*
H7B0.26830.17650.52410.051*
H7C0.44690.17800.55720.051*
C80.35597 (18)0.34072 (16)0.44340 (12)0.0254 (3)
C90.47170 (18)0.50943 (16)0.34763 (12)0.0244 (3)
C100.20147 (18)0.56977 (16)0.39979 (12)0.0255 (3)
N10.05944 (15)0.02890 (14)0.34824 (11)0.0279 (3)
N20.18531 (16)0.17023 (15)0.21443 (11)0.0299 (3)
N3−0.08554 (15)0.27267 (14)0.28518 (11)0.0284 (3)
N4−0.20112 (16)0.13534 (15)0.41484 (11)0.0323 (3)
H4A−0.19840.05630.45590.039*
H4B−0.28710.20790.41670.039*
N60.20797 (15)0.43256 (14)0.44771 (11)0.0273 (3)
N70.49186 (15)0.37128 (13)0.39648 (10)0.0268 (3)
N80.32886 (15)0.61343 (14)0.34805 (11)0.0274 (3)
N90.05530 (15)0.66659 (15)0.40412 (12)0.0336 (3)
H9A0.04420.75460.37420.040*
H9B−0.02760.64090.43680.040*
N100.60412 (15)0.54140 (15)0.29698 (11)0.0309 (3)
H10A0.59790.62760.26500.037*
H10B0.69590.47590.29620.037*
O10.44204 (16)0.18580 (16)0.06094 (10)0.0475 (4)
H10.36070.18970.10240.071*
C110.0989 (3)0.1326 (3)0.89654 (19)0.0599 (6)
H11A0.13240.11240.97250.090*
H11B0.03210.06550.87690.090*
H11C0.03700.23440.89000.090*
C120.2460 (2)0.1100 (2)0.81971 (17)0.0495 (5)
H12A0.30360.00530.82370.059*
H12B0.21030.13100.74340.059*
N50.31467 (16)−0.06868 (15)0.26948 (12)0.0353 (3)
H5D0.3180−0.14900.30910.042*
H5E0.3961−0.06190.22490.042*
O20.35702 (16)0.19983 (16)0.84251 (11)0.0461 (3)
H20.37690.19310.90950.069*
U11U22U33U12U13U23
C10.0392 (10)0.0326 (9)0.0423 (10)−0.0051 (7)0.0017 (8)0.0095 (8)
C20.0299 (8)0.0272 (8)0.0294 (8)−0.0059 (7)−0.0023 (6)0.0018 (6)
C30.0241 (8)0.0242 (8)0.0282 (8)−0.0041 (6)−0.0011 (6)−0.0001 (6)
C40.0250 (8)0.0267 (8)0.0281 (8)−0.0051 (6)−0.0004 (6)0.0010 (6)
C50.0531 (13)0.0762 (16)0.0747 (16)−0.0344 (12)0.0045 (11)0.0046 (12)
C60.0485 (11)0.0488 (11)0.0516 (12)−0.0174 (9)0.0003 (9)−0.0063 (9)
C70.0298 (9)0.0250 (8)0.0454 (10)−0.0028 (7)0.0032 (7)0.0040 (7)
C80.0248 (8)0.0233 (8)0.0269 (8)−0.0032 (6)0.0004 (6)−0.0019 (6)
C90.0251 (8)0.0230 (7)0.0242 (8)−0.0037 (6)0.0001 (6)−0.0011 (6)
C100.0237 (8)0.0244 (8)0.0270 (8)−0.0028 (6)−0.0012 (6)−0.0002 (6)
N10.0247 (7)0.0251 (7)0.0313 (7)−0.0019 (5)0.0038 (5)0.0036 (5)
N20.0293 (7)0.0285 (7)0.0311 (7)−0.0062 (6)0.0035 (5)0.0031 (6)
N30.0257 (7)0.0258 (7)0.0321 (7)−0.0030 (5)0.0003 (5)0.0039 (5)
N40.0258 (7)0.0250 (7)0.0419 (8)0.0007 (5)0.0089 (6)0.0058 (6)
N60.0237 (7)0.0234 (7)0.0334 (7)−0.0032 (5)0.0008 (5)0.0007 (5)
N70.0241 (7)0.0228 (7)0.0312 (7)−0.0013 (5)0.0016 (5)0.0015 (5)
N80.0251 (7)0.0239 (7)0.0309 (7)−0.0016 (5)0.0009 (5)0.0026 (5)
N90.0223 (7)0.0269 (7)0.0478 (9)0.0005 (5)0.0038 (6)0.0078 (6)
N100.0237 (7)0.0253 (7)0.0411 (8)−0.0017 (5)0.0039 (6)0.0054 (6)
O10.0477 (8)0.0614 (9)0.0398 (7)−0.0274 (7)0.0112 (6)−0.0083 (6)
C110.0513 (12)0.0746 (15)0.0606 (14)−0.0303 (11)0.0095 (10)−0.0034 (11)
C120.0453 (11)0.0601 (13)0.0463 (11)−0.0190 (10)0.0023 (9)−0.0044 (9)
N50.0260 (7)0.0298 (7)0.0455 (8)0.0005 (6)0.0105 (6)0.0072 (6)
O20.0461 (8)0.0581 (8)0.0391 (7)−0.0241 (6)0.0010 (6)0.0112 (6)
C1—C21.494 (2)C8—N71.3327 (19)
C1—H1A0.9600C9—N101.3300 (19)
C1—H1B0.9600C9—N81.3471 (19)
C1—H1C0.9600C9—N71.3571 (19)
C2—N31.327 (2)C10—N91.3364 (19)
C2—N21.340 (2)C10—N81.3459 (19)
C3—N41.332 (2)C10—N61.3580 (19)
C3—N11.3466 (19)N4—H4A0.8600
C3—N31.3576 (19)N4—H4B0.8600
C4—N51.332 (2)N9—H9A0.8600
C4—N11.346 (2)N9—H9B0.8600
C4—N21.355 (2)N10—H10A0.8600
C5—C61.490 (3)N10—H10B0.8600
C5—H5A0.9600O1—H10.8200
C5—H5B0.9600C11—C121.482 (3)
C5—H5C0.9600C11—H11A0.9600
C6—O11.417 (2)C11—H11B0.9600
C6—H6A0.9700C11—H11C0.9600
C6—H6B0.9700C12—O21.415 (2)
C7—C81.494 (2)C12—H12A0.9700
C7—H7A0.9600C12—H12B0.9700
C7—H7B0.9600N5—H5D0.8600
C7—H7C0.9600N5—H5E0.8600
C8—N61.3285 (19)O2—H20.8200
C2—C1—H1A109.5N10—C9—N7116.38 (13)
C2—C1—H1B109.5N8—C9—N7124.41 (13)
H1A—C1—H1B109.5N9—C10—N8118.57 (13)
C2—C1—H1C109.5N9—C10—N6116.26 (13)
H1A—C1—H1C109.5N8—C10—N6125.17 (13)
H1B—C1—H1C109.5C4—N1—C3114.56 (13)
N3—C2—N2125.90 (14)C2—N2—C4114.89 (13)
N3—C2—C1117.42 (14)C2—N3—C3114.50 (13)
N2—C2—C1116.68 (14)C3—N4—H4A120.0
N4—C3—N1117.82 (13)C3—N4—H4B120.0
N4—C3—N3116.89 (13)H4A—N4—H4B120.0
N1—C3—N3125.28 (13)C8—N6—C10114.35 (12)
N5—C4—N1117.59 (14)C8—N7—C9114.99 (12)
N5—C4—N2117.68 (13)C10—N8—C9114.81 (12)
N1—C4—N2124.72 (14)C10—N9—H9A120.0
C6—C5—H5A109.5C10—N9—H9B120.0
C6—C5—H5B109.5H9A—N9—H9B120.0
H5A—C5—H5B109.5C9—N10—H10A120.0
C6—C5—H5C109.5C9—N10—H10B120.0
H5A—C5—H5C109.5H10A—N10—H10B120.0
H5B—C5—H5C109.5C6—O1—H1109.5
O1—C6—C5109.36 (17)C12—C11—H11A109.5
O1—C6—H6A109.8C12—C11—H11B109.5
C5—C6—H6A109.8H11A—C11—H11B109.5
O1—C6—H6B109.8C12—C11—H11C109.5
C5—C6—H6B109.8H11A—C11—H11C109.5
H6A—C6—H6B108.3H11B—C11—H11C109.5
C8—C7—H7A109.5O2—C12—C11114.80 (17)
C8—C7—H7B109.5O2—C12—H12A108.6
H7A—C7—H7B109.5C11—C12—H12A108.6
C8—C7—H7C109.5O2—C12—H12B108.6
H7A—C7—H7C109.5C11—C12—H12B108.6
H7B—C7—H7C109.5H12A—C12—H12B107.5
N6—C8—N7126.22 (13)C4—N5—H5D120.0
N6—C8—C7117.53 (13)C4—N5—H5E120.0
N7—C8—C7116.25 (13)H5D—N5—H5E120.0
N10—C9—N8119.21 (13)C12—O2—H2109.5
N5—C4—N1—C3−177.19 (14)N7—C8—N6—C10−0.8 (2)
N2—C4—N1—C33.9 (2)C7—C8—N6—C10178.93 (13)
N4—C3—N1—C4178.53 (14)N9—C10—N6—C8−178.84 (13)
N3—C3—N1—C4−0.9 (2)N8—C10—N6—C82.1 (2)
N3—C2—N2—C4−0.2 (2)N6—C8—N7—C9−1.2 (2)
C1—C2—N2—C4178.97 (14)C7—C8—N7—C9179.03 (13)
N5—C4—N2—C2177.66 (14)N10—C9—N7—C8−177.94 (13)
N1—C4—N2—C2−3.4 (2)N8—C9—N7—C82.4 (2)
N2—C2—N3—C32.9 (2)N9—C10—N8—C9179.85 (13)
C1—C2—N3—C3−176.34 (14)N6—C10—N8—C9−1.1 (2)
N4—C3—N3—C2178.33 (14)N10—C9—N8—C10179.00 (13)
N1—C3—N3—C2−2.3 (2)N7—C9—N8—C10−1.3 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4B···N7i0.862.112.9666 (18)171
N5—H5D···N8ii0.862.193.0132 (19)159
N5—H5E···O2iii0.862.293.0071 (19)142
N10—H10A···O2iv0.862.102.9337 (18)163
O2—H2···O1v0.821.902.7185 (18)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4B⋯N7i0.862.112.9666 (18)171
N5—H5D⋯N8ii0.862.193.0132 (19)159
N5—H5E⋯O2iii0.862.293.0071 (19)142
N10—H10A⋯O2iv0.862.102.9337 (18)163
O2—H2⋯O1v0.821.902.7185 (18)174

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  3 in total

1.  2,4-Diamino-6-methyl-1,3,5-triazin-1-ium nitrate.

Authors:  Ying Fan; Wei You; Hui-Fen Qian; Jian-Lan Liu; Wei Huang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-11

2.  2,4-Diamino-6-methyl-1,3,5-triazin-1-ium hydrogen oxalate.

Authors:  Leila Narimani; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21

3.  6-Methyl-1,3,5-triazine-2,4-diamine butane-1,4-diol monosolvate.

Authors:  Rajni M Bhardwaj; Iain Oswald; Alastair J Florence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-17
  3 in total

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