Literature DB >> 21200833

2,4-Diamino-6-methyl-1,3,5-triazine methanol solvate.

Małgorzata Kaczmarek1, Wanda Radecka-Paryzek, Maciej Kubicki.   

Abstract

The crystal structure of the title compound, C(4)H(7)N(5)·CH(4)O, is determined by an extensive network of hydrogen bonding. A sequence of centrosymmetric dimeric associations, formed by two different N-H(amino)⋯N(ring) hydrogen bonds, connects the triazine rings into a planar mol-ecular tape. The methanol solvent mol-ecules act as di-acceptors and mono-donors of hydrogen bonds and inter-link, almost perpendicularly, the hydrogen-bonded tapes into a three-dimensional structure.

Entities:  

Year:  2007        PMID: 21200833      PMCID: PMC2915324          DOI: 10.1107/S160053680706607X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Allen (2002 ▶); Radecka-Paryzek et al. (2005 ▶); Šebenik et al. (1989 ▶); Tashiro & Oiwa (1981 ▶).

Experimental

Crystal data

C4H7N5·CH4O M = 157.19 Monoclinic, a = 21.024 (5) Å b = 5.4726 (10) Å c = 14.198 (3) Å β = 95.66 (2)° V = 1625.6 (6) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 295 (2) K 0.4 × 0.2 × 0.2 mm

Data collection

Kuma KM4 CCD diffractometer Absorption correction: none 5226 measured reflections 1737 independent reflections 1191 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.146 S = 1.07 1737 reflections 122 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: Stereochemical Workstation Operation Manual (Siemens, 1989 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680706607X/rz2183sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706607X/rz2183Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H7N5·CH4OF000 = 672
Mr = 157.19Dx = 1.285 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2082 reflections
a = 21.024 (5) Åθ = 4–22º
b = 5.4726 (10) ŵ = 0.10 mm1
c = 14.198 (3) ÅT = 295 (2) K
β = 95.66 (2)ºBlock, colourless
V = 1625.6 (6) Å30.4 × 0.2 × 0.2 mm
Z = 8
Kuma KM-4-CCD four-circle diffractometer1737 independent reflections
Radiation source: fine-focus sealed tube1191 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
Detector resolution: 8.1929 pixels mm-1θmax = 27.0º
T = 295(1) Kθmin = 2.9º
ω scansh = −26→26
Absorption correction: nonek = −4→6
5226 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.146  w = 1/[σ2(Fo2) + (0.0834P)2 + 0.3526P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
1737 reflectionsΔρmax = 0.17 e Å3
122 parametersΔρmin = −0.28 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.19697 (6)1.0111 (2)0.94292 (10)0.0405 (4)
C20.14975 (8)1.1070 (3)0.99110 (11)0.0375 (4)
N20.16650 (8)1.2910 (3)1.04951 (12)0.0491 (4)
H2B0.1372 (12)1.360 (4)1.0792 (17)0.069 (7)*
H2A0.2049 (11)1.346 (4)1.0518 (15)0.056 (6)*
N30.08942 (6)1.0268 (3)0.98441 (10)0.0410 (4)
C40.07625 (8)0.8402 (3)0.92379 (12)0.0400 (4)
N40.01687 (8)0.7548 (3)0.91381 (14)0.0576 (5)
H4B0.0074 (11)0.634 (4)0.8728 (16)0.065 (7)*
H4A−0.0141 (11)0.813 (4)0.9441 (16)0.055 (6)*
N50.11934 (6)0.7355 (3)0.87109 (10)0.0412 (4)
C60.17841 (8)0.8266 (3)0.88561 (12)0.0388 (4)
C610.22793 (9)0.7086 (4)0.83245 (15)0.0521 (5)
H61A0.26820.78980.84720.068*
H61B0.21540.72050.76570.068*
H61C0.23210.53970.85020.068*
O1S0.08620 (7)0.4874 (2)0.69953 (10)0.0574 (4)
H1S0.0976 (14)0.579 (6)0.756 (3)0.113 (11)*
C1S0.08937 (12)0.2368 (4)0.71909 (17)0.0707 (7)
H1S10.13290.19160.73800.092*
H1S20.07390.14690.66340.092*
H1S30.06350.20000.76930.092*
U11U22U33U12U13U23
N10.0315 (7)0.0499 (8)0.0406 (8)−0.0021 (6)0.0066 (6)−0.0054 (6)
C20.0315 (8)0.0475 (9)0.0331 (8)−0.0026 (7)0.0021 (6)−0.0012 (7)
N20.0350 (8)0.0597 (10)0.0532 (10)−0.0065 (7)0.0078 (7)−0.0180 (8)
N30.0327 (8)0.0499 (8)0.0412 (8)−0.0050 (6)0.0078 (6)−0.0053 (6)
C40.0344 (9)0.0465 (9)0.0397 (9)−0.0035 (7)0.0056 (7)−0.0003 (7)
N40.0382 (9)0.0674 (11)0.0689 (11)−0.0150 (8)0.0135 (8)−0.0252 (10)
N50.0387 (8)0.0436 (8)0.0419 (8)−0.0041 (6)0.0068 (6)−0.0049 (6)
C60.0365 (9)0.0442 (9)0.0358 (9)0.0014 (7)0.0034 (7)0.0019 (7)
C610.0441 (10)0.0601 (11)0.0534 (11)0.0022 (9)0.0113 (8)−0.0105 (9)
O1S0.0728 (10)0.0551 (8)0.0426 (8)0.0036 (7)−0.0031 (7)0.0031 (6)
C1S0.0870 (18)0.0544 (13)0.0731 (15)−0.0019 (11)0.0203 (13)−0.0045 (11)
N1—C61.331 (2)N5—C61.335 (2)
N1—C21.365 (2)C6—C611.492 (2)
C2—N21.330 (2)C61—H61A0.9600
C2—N31.337 (2)C61—H61B0.9600
N2—H2B0.87 (3)C61—H61C0.9600
N2—H2A0.86 (2)O1S—C1S1.400 (2)
N3—C41.347 (2)O1S—H1S0.96 (4)
C4—N41.328 (2)C1S—H1S10.9600
C4—N51.358 (2)C1S—H1S20.9600
N4—H4B0.89 (2)C1S—H1S30.9600
N4—H4A0.88 (2)
C6—N1—C2114.47 (14)N1—C6—C61117.42 (15)
N2—C2—N3118.93 (16)N5—C6—C61116.44 (16)
N2—C2—N1116.28 (15)C6—C61—H61A109.5
N3—C2—N1124.78 (16)C6—C61—H61B109.5
C2—N2—H2B118.5 (17)H61A—C61—H61B109.5
C2—N2—H2A118.6 (14)C6—C61—H61C109.5
H2B—N2—H2A123 (2)H61A—C61—H61C109.5
C2—N3—C4115.34 (14)H61B—C61—H61C109.5
N4—C4—N3117.85 (16)C1S—O1S—H1S110 (2)
N4—C4—N5117.65 (17)O1S—C1S—H1S1109.5
N3—C4—N5124.49 (15)O1S—C1S—H1S2109.5
C4—N4—H4B118.5 (15)H1S1—C1S—H1S2109.5
C4—N4—H4A123.7 (14)O1S—C1S—H1S3109.5
H4B—N4—H4A118 (2)H1S1—C1S—H1S3109.5
C6—N5—C4114.73 (15)H1S2—C1S—H1S3109.5
N1—C6—N5126.14 (15)
C6—N1—C2—N2179.66 (15)N4—C4—N5—C6−178.87 (16)
C6—N1—C2—N30.7 (2)N3—C4—N5—C62.1 (3)
N2—C2—N3—C4179.99 (16)C2—N1—C6—N51.3 (2)
N1—C2—N3—C4−1.1 (3)C2—N1—C6—C61−178.50 (15)
C2—N3—C4—N4−179.45 (16)C4—N5—C6—N1−2.6 (3)
C2—N3—C4—N5−0.4 (3)C4—N5—C6—C61177.21 (15)
D—H···AD—HH···AD···AD—H···A
O1S—H1S···N50.96 (4)1.86 (4)2.816 (2)176 (3)
N2—H2B···O1Si0.87 (3)2.26 (3)3.093 (2)160 (2)
N2—H2A···N1ii0.86 (2)2.20 (2)3.060 (2)180 (2)
N4—H4B···O1Siii0.89 (2)2.27 (2)2.956 (2)133.2 (19)
N4—H4A···N3iv0.88 (2)2.15 (2)3.024 (2)177.3 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1S—H1S⋯N50.96 (4)1.86 (4)2.816 (2)176 (3)
N2—H2B⋯O1Si0.87 (3)2.26 (3)3.093 (2)160 (2)
N2—H2A⋯N1ii0.86 (2)2.20 (2)3.060 (2)180 (2)
N4—H4B⋯O1Siii0.89 (2)2.27 (2)2.956 (2)133.2 (19)
N4—H4A⋯N3iv0.88 (2)2.15 (2)3.024 (2)177.3 (19)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  1 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29
  1 in total
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2.  2,4-Diamino-6-methyl-1,3,5-triazin-1-ium hydrogen oxalate.

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Authors:  Rajni M Bhardwaj; Iain Oswald; Alastair J Florence
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  3 in total

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