| Literature DB >> 21200833 |
Małgorzata Kaczmarek1, Wanda Radecka-Paryzek, Maciej Kubicki.
Abstract
The crystal structure of the title compound, C(4)H(7)N(5)·CH(4)O, is determined by an extensive network of hydrogen bonding. A sequence of centrosymmetric dimeric associations, formed by two different N-H(amino)⋯N(ring) hydrogen bonds, connects the triazine rings into a planar mol-ecular tape. The methanol solvent mol-ecules act as di-acceptors and mono-donors of hydrogen bonds and inter-link, almost perpendicularly, the hydrogen-bonded tapes into a three-dimensional structure.Entities:
Year: 2007 PMID: 21200833 PMCID: PMC2915324 DOI: 10.1107/S160053680706607X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H7N5·CH4O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2082 reflections |
| θ = 4–22º | |
| µ = 0.10 mm−1 | |
| β = 95.66 (2)º | Block, colourless |
| 0.4 × 0.2 × 0.2 mm | |
| Kuma KM-4-CCD four-circle diffractometer | 1737 independent reflections |
| Radiation source: fine-focus sealed tube | 1191 reflections with |
| Monochromator: graphite | |
| Detector resolution: 8.1929 pixels mm-1 | θmax = 27.0º |
| θmin = 2.9º | |
| ω scans | |
| Absorption correction: none | |
| 5226 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.001 | |
| 1737 reflections | Δρmax = 0.17 e Å−3 |
| 122 parameters | Δρmin = −0.28 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.19697 (6) | 1.0111 (2) | 0.94292 (10) | 0.0405 (4) | |
| C2 | 0.14975 (8) | 1.1070 (3) | 0.99110 (11) | 0.0375 (4) | |
| N2 | 0.16650 (8) | 1.2910 (3) | 1.04951 (12) | 0.0491 (4) | |
| H2B | 0.1372 (12) | 1.360 (4) | 1.0792 (17) | 0.069 (7)* | |
| H2A | 0.2049 (11) | 1.346 (4) | 1.0518 (15) | 0.056 (6)* | |
| N3 | 0.08942 (6) | 1.0268 (3) | 0.98441 (10) | 0.0410 (4) | |
| C4 | 0.07625 (8) | 0.8402 (3) | 0.92379 (12) | 0.0400 (4) | |
| N4 | 0.01687 (8) | 0.7548 (3) | 0.91381 (14) | 0.0576 (5) | |
| H4B | 0.0074 (11) | 0.634 (4) | 0.8728 (16) | 0.065 (7)* | |
| H4A | −0.0141 (11) | 0.813 (4) | 0.9441 (16) | 0.055 (6)* | |
| N5 | 0.11934 (6) | 0.7355 (3) | 0.87109 (10) | 0.0412 (4) | |
| C6 | 0.17841 (8) | 0.8266 (3) | 0.88561 (12) | 0.0388 (4) | |
| C61 | 0.22793 (9) | 0.7086 (4) | 0.83245 (15) | 0.0521 (5) | |
| H61A | 0.2682 | 0.7898 | 0.8472 | 0.068* | |
| H61B | 0.2154 | 0.7205 | 0.7657 | 0.068* | |
| H61C | 0.2321 | 0.5397 | 0.8502 | 0.068* | |
| O1S | 0.08620 (7) | 0.4874 (2) | 0.69953 (10) | 0.0574 (4) | |
| H1S | 0.0976 (14) | 0.579 (6) | 0.756 (3) | 0.113 (11)* | |
| C1S | 0.08937 (12) | 0.2368 (4) | 0.71909 (17) | 0.0707 (7) | |
| H1S1 | 0.1329 | 0.1916 | 0.7380 | 0.092* | |
| H1S2 | 0.0739 | 0.1469 | 0.6634 | 0.092* | |
| H1S3 | 0.0635 | 0.2000 | 0.7693 | 0.092* |
| N1 | 0.0315 (7) | 0.0499 (8) | 0.0406 (8) | −0.0021 (6) | 0.0066 (6) | −0.0054 (6) |
| C2 | 0.0315 (8) | 0.0475 (9) | 0.0331 (8) | −0.0026 (7) | 0.0021 (6) | −0.0012 (7) |
| N2 | 0.0350 (8) | 0.0597 (10) | 0.0532 (10) | −0.0065 (7) | 0.0078 (7) | −0.0180 (8) |
| N3 | 0.0327 (8) | 0.0499 (8) | 0.0412 (8) | −0.0050 (6) | 0.0078 (6) | −0.0053 (6) |
| C4 | 0.0344 (9) | 0.0465 (9) | 0.0397 (9) | −0.0035 (7) | 0.0056 (7) | −0.0003 (7) |
| N4 | 0.0382 (9) | 0.0674 (11) | 0.0689 (11) | −0.0150 (8) | 0.0135 (8) | −0.0252 (10) |
| N5 | 0.0387 (8) | 0.0436 (8) | 0.0419 (8) | −0.0041 (6) | 0.0068 (6) | −0.0049 (6) |
| C6 | 0.0365 (9) | 0.0442 (9) | 0.0358 (9) | 0.0014 (7) | 0.0034 (7) | 0.0019 (7) |
| C61 | 0.0441 (10) | 0.0601 (11) | 0.0534 (11) | 0.0022 (9) | 0.0113 (8) | −0.0105 (9) |
| O1S | 0.0728 (10) | 0.0551 (8) | 0.0426 (8) | 0.0036 (7) | −0.0031 (7) | 0.0031 (6) |
| C1S | 0.0870 (18) | 0.0544 (13) | 0.0731 (15) | −0.0019 (11) | 0.0203 (13) | −0.0045 (11) |
| N1—C6 | 1.331 (2) | N5—C6 | 1.335 (2) |
| N1—C2 | 1.365 (2) | C6—C61 | 1.492 (2) |
| C2—N2 | 1.330 (2) | C61—H61A | 0.9600 |
| C2—N3 | 1.337 (2) | C61—H61B | 0.9600 |
| N2—H2B | 0.87 (3) | C61—H61C | 0.9600 |
| N2—H2A | 0.86 (2) | O1S—C1S | 1.400 (2) |
| N3—C4 | 1.347 (2) | O1S—H1S | 0.96 (4) |
| C4—N4 | 1.328 (2) | C1S—H1S1 | 0.9600 |
| C4—N5 | 1.358 (2) | C1S—H1S2 | 0.9600 |
| N4—H4B | 0.89 (2) | C1S—H1S3 | 0.9600 |
| N4—H4A | 0.88 (2) | ||
| C6—N1—C2 | 114.47 (14) | N1—C6—C61 | 117.42 (15) |
| N2—C2—N3 | 118.93 (16) | N5—C6—C61 | 116.44 (16) |
| N2—C2—N1 | 116.28 (15) | C6—C61—H61A | 109.5 |
| N3—C2—N1 | 124.78 (16) | C6—C61—H61B | 109.5 |
| C2—N2—H2B | 118.5 (17) | H61A—C61—H61B | 109.5 |
| C2—N2—H2A | 118.6 (14) | C6—C61—H61C | 109.5 |
| H2B—N2—H2A | 123 (2) | H61A—C61—H61C | 109.5 |
| C2—N3—C4 | 115.34 (14) | H61B—C61—H61C | 109.5 |
| N4—C4—N3 | 117.85 (16) | C1S—O1S—H1S | 110 (2) |
| N4—C4—N5 | 117.65 (17) | O1S—C1S—H1S1 | 109.5 |
| N3—C4—N5 | 124.49 (15) | O1S—C1S—H1S2 | 109.5 |
| C4—N4—H4B | 118.5 (15) | H1S1—C1S—H1S2 | 109.5 |
| C4—N4—H4A | 123.7 (14) | O1S—C1S—H1S3 | 109.5 |
| H4B—N4—H4A | 118 (2) | H1S1—C1S—H1S3 | 109.5 |
| C6—N5—C4 | 114.73 (15) | H1S2—C1S—H1S3 | 109.5 |
| N1—C6—N5 | 126.14 (15) | ||
| C6—N1—C2—N2 | 179.66 (15) | N4—C4—N5—C6 | −178.87 (16) |
| C6—N1—C2—N3 | 0.7 (2) | N3—C4—N5—C6 | 2.1 (3) |
| N2—C2—N3—C4 | 179.99 (16) | C2—N1—C6—N5 | 1.3 (2) |
| N1—C2—N3—C4 | −1.1 (3) | C2—N1—C6—C61 | −178.50 (15) |
| C2—N3—C4—N4 | −179.45 (16) | C4—N5—C6—N1 | −2.6 (3) |
| C2—N3—C4—N5 | −0.4 (3) | C4—N5—C6—C61 | 177.21 (15) |
| H··· | ||||
| O1S—H1S···N5 | 0.96 (4) | 1.86 (4) | 2.816 (2) | 176 (3) |
| N2—H2B···O1Si | 0.87 (3) | 2.26 (3) | 3.093 (2) | 160 (2) |
| N2—H2A···N1ii | 0.86 (2) | 2.20 (2) | 3.060 (2) | 180 (2) |
| N4—H4B···O1Siii | 0.89 (2) | 2.27 (2) | 2.956 (2) | 133.2 (19) |
| N4—H4A···N3iv | 0.88 (2) | 2.15 (2) | 3.024 (2) | 177.3 (19) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.96 (4) | 1.86 (4) | 2.816 (2) | 176 (3) |
| N2—H2 | 0.87 (3) | 2.26 (3) | 3.093 (2) | 160 (2) |
| N2—H2 | 0.86 (2) | 2.20 (2) | 3.060 (2) | 180 (2) |
| N4—H4 | 0.89 (2) | 2.27 (2) | 2.956 (2) | 133.2 (19) |
| N4—H4 | 0.88 (2) | 2.15 (2) | 3.024 (2) | 177.3 (19) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .