Literature DB >> 21580604

2,4-Diamino-6-methyl-1,3,5-triazin-1-ium chloride.

Hui-Fen Qian, Wei Huang.   

Abstract

In the title compound, C(4)H(8)N(5) (+)·Cl(-), a two-dimensional layer packing network is observed in which every chloride anion links three adjacent 2,4-diamino-6-methyl-1,3,5-triazin-1-ium cations by N-H⋯Cl hydrogen-bonding inter-actions, forming 12-membered and eight-membered hydrogen-bonded rings with graph-set motifs R(4) (4)(12) and R(3) (3)(8), respectively. In addition, N-H⋯N hydrogen bonds are found between adjacent cations, forming another type of eight-membered [R(2) (2)(8)] hydrogen-bonded ring.

Entities:  

Year:  2010        PMID: 21580604      PMCID: PMC2984090          DOI: 10.1107/S1600536810007907

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related complexes, see Delori et al. (2008 ▶); Fan et al. (2009 ▶); Perpétuo & Janczak (2007 ▶); Portalone & Colapietro (2007 ▶); Wijaya et al. (2004 ▶).

Experimental

Crystal data

C4H8N5 +·Cl− M = 161.60 Triclinic, a = 5.6449 (11) Å b = 7.8723 (15) Å c = 9.3476 (17) Å α = 65.551 (3)° β = 75.779 (2)° γ = 71.027 (2)° V = 354.61 (12) Å3 Z = 2 Mo Kα radiation μ = 0.47 mm−1 T = 291 K 0.16 × 0.14 × 0.10 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.929, T max = 0.955 1871 measured reflections 1303 independent reflections 1042 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.111 S = 1.07 1303 reflections 96 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810007907/nk2023sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810007907/nk2023Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H8N5+·ClZ = 2
Mr = 161.60F(000) = 168
Triclinic, P1Dx = 1.513 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.6449 (11) ÅCell parameters from 890 reflections
b = 7.8723 (15) Åθ = 2.4–28.0°
c = 9.3476 (17) ŵ = 0.47 mm1
α = 65.551 (3)°T = 291 K
β = 75.779 (2)°Block, colourless
γ = 71.027 (2)°0.16 × 0.14 × 0.10 mm
V = 354.61 (12) Å3
Bruker SMART 1K CCD area-detector diffractometer1303 independent reflections
Radiation source: sealed tube1042 reflections with I > 2σ(I)
graphiteRint = 0.082
ω scansθmax = 25.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.929, Tmax = 0.955k = −9→8
1871 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: difference Fourier map
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0566P)2] where P = (Fo2 + 2Fc2)/3
1303 reflections(Δ/σ)max < 0.001
96 parametersΔρmax = 0.25 e Å3
2 restraintsΔρmin = −0.28 e Å3
Experimental. The structure was solved by direct methods (Bruker, 2007) and successive difference Fourier syntheses.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4096 (5)0.1560 (3)0.7585 (3)0.0347 (6)
C20.2148 (4)0.2118 (3)0.9841 (3)0.0321 (5)
C30.5223 (4)0.3642 (3)0.8366 (3)0.0328 (6)
C40.4508 (5)0.0666 (4)0.6414 (3)0.0458 (7)
H4A0.4399−0.06470.69490.069*
H4B0.61520.06960.58170.069*
H4C0.32440.13650.57090.069*
Cl11.09342 (12)0.67148 (10)0.58725 (8)0.0492 (3)
N10.2385 (4)0.1200 (3)0.8830 (2)0.0375 (5)
N20.3507 (4)0.3320 (3)0.9661 (2)0.0338 (5)
N30.5556 (4)0.2746 (3)0.7331 (2)0.0351 (5)
N40.0432 (4)0.1740 (3)1.1080 (2)0.0433 (6)
H4D0.01890.22621.17670.052*
H4E−0.04520.09691.12050.052*
N50.6634 (4)0.4803 (3)0.8085 (2)0.0443 (6)
H5A0.64660.53650.87330.053*
H5B0.77310.50030.72520.053*
H30.654 (4)0.297 (4)0.6445 (19)0.058 (9)*
U11U22U33U12U13U23
C10.0390 (14)0.0376 (13)0.0335 (13)−0.0099 (11)0.0005 (10)−0.0214 (10)
C20.0379 (13)0.0339 (12)0.0281 (12)−0.0104 (10)0.0016 (10)−0.0170 (10)
C30.0378 (13)0.0349 (12)0.0309 (12)−0.0106 (10)−0.0010 (10)−0.0177 (10)
C40.0544 (17)0.0604 (17)0.0401 (14)−0.0242 (14)0.0072 (12)−0.0352 (13)
Cl10.0474 (5)0.0639 (5)0.0421 (4)−0.0230 (3)0.0105 (3)−0.0272 (3)
N10.0442 (13)0.0421 (12)0.0352 (12)−0.0180 (10)0.0051 (10)−0.0232 (9)
N20.0400 (12)0.0386 (11)0.0303 (10)−0.0161 (9)0.0038 (9)−0.0198 (9)
N30.0403 (12)0.0403 (11)0.0312 (11)−0.0145 (10)0.0053 (9)−0.0216 (9)
N40.0524 (13)0.0533 (13)0.0392 (12)−0.0276 (11)0.0114 (10)−0.0300 (10)
N50.0539 (14)0.0555 (13)0.0393 (12)−0.0311 (11)0.0121 (10)−0.0294 (10)
C1—N11.311 (3)C4—H4A0.9600
C1—N31.352 (3)C4—H4B0.9600
C1—C41.468 (3)C4—H4C0.9600
C2—N41.312 (3)N3—H30.862 (11)
C2—N21.337 (3)N4—H4D0.8600
C2—N11.369 (3)N4—H4E0.8600
C3—N51.308 (3)N5—H5A0.8600
C3—N21.341 (3)N5—H5B0.8600
C3—N31.363 (3)
N1—C1—N3122.0 (2)H4A—C4—H4C109.5
N1—C1—C4120.7 (2)H4B—C4—H4C109.5
N3—C1—C4117.3 (2)C1—N1—C2115.85 (19)
N4—C2—N2119.4 (2)C2—N2—C3116.07 (18)
N4—C2—N1115.07 (19)C1—N3—C3119.81 (19)
N2—C2—N1125.6 (2)C1—N3—H3115 (2)
N5—C3—N2120.5 (2)C3—N3—H3124 (2)
N5—C3—N3118.8 (2)C2—N4—H4D120.0
N2—C3—N3120.7 (2)C2—N4—H4E120.0
C1—C4—H4A109.5H4D—N4—H4E120.0
C1—C4—H4B109.5C3—N5—H5A120.0
H4A—C4—H4B109.5C3—N5—H5B120.0
C1—C4—H4C109.5H5A—N5—H5B120.0
N3—C1—N1—C20.9 (3)N5—C3—N2—C2179.7 (2)
C4—C1—N1—C2−179.6 (2)N3—C3—N2—C2−1.3 (3)
N4—C2—N1—C1−179.9 (2)N1—C1—N3—C3−1.6 (4)
N2—C2—N1—C1−0.3 (3)C4—C1—N3—C3178.8 (2)
N4—C2—N2—C3−179.9 (2)N5—C3—N3—C1−179.1 (2)
N1—C2—N2—C30.6 (3)N2—C3—N3—C11.9 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3···Cl1i0.86 (1)2.25 (1)3.107 (2)174 (3)
N4—H4D···Cl1ii0.862.523.372 (2)169
N4—H4E···N1iii0.862.323.171 (3)170
N5—H5A···N2ii0.862.153.008 (3)174
N5—H5B···Cl10.862.403.125 (2)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯Cl1i0.86 (1)2.25 (1)3.107 (2)174 (3)
N4—H4D⋯Cl1ii0.862.523.372 (2)169
N4—H4E⋯N1iii0.862.323.171 (3)170
N5—H5A⋯N2ii0.862.153.008 (3)174
N5—H5B⋯Cl10.862.403.125 (2)143

Symmetry codes: (i) ; (ii) ; (iii) .

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