Literature DB >> 22091097

5-Amino-1H-1,2,4-triazol-4-ium-3-carboxyl-ate hemihydrate.

José A Fernandes, Bing Liu, João P C Tomé, Luís Cunha-Silva, Filipe A Almeida Paz.   

Abstract

The asymmetric unit of the title compound, C(3)H(4)N(4)O(2)·0.5H(2)O, comprises two whole mol-ecules of 5-amino-1H-1,2,4-triazole-3-carb-oxy-lic acid in its zwitterionic form (proton transfer occurs from the carb-oxy-lic acid group to the N hetero-atom at position 1), plus one water mol-ecule of crystallization. The organic moieties are disposed into supra-molecular layers linked by N-H⋯O and N-H⋯N hydrogen bonds parallel to the bc plane. Additional O-H⋯O and N-H⋯O hydrogen bonds involving the water mol-ecules and the organic mol-ecules lead to the formation of double-deck supra-molecular arrangements which are inter-connected along the a axis via π-π stacking [centroid-centroid distance = 3.507 (3) Å].

Entities:  

Year:  2011        PMID: 22091097      PMCID: PMC3213518          DOI: 10.1107/S160053681102811X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds with 5-amino-1H-1,2,4-triazole-3-carb­oxy­lic acid residues, see: Masiukiewicz et al. (2007 ▶); Ouakkaf et al. (2011 ▶); Sun et al. (2011 ▶); Wawrzycka-Gorczyca et al. (2003 ▶). For previous work in crystal engineering, see: Amarante, Gonçalves et al. (2009 ▶); Amarante, Figueiredo et al. (2009 ▶); Shi et al. (2008 ▶); Paz & Klinowski (2004 ▶, 2007 ▶); Paz et al. (2005 ▶). For graph-set notation, see: Grell et al. (1999 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C3H4N4O2·0.5H2O M = 137.11 Triclinic, a = 6.5440 (11) Å b = 6.9490 (8) Å c = 12.0723 (17) Å α = 93.976 (7)° β = 105.012 (9)° γ = 99.703 (8)° V = 518.96 (13) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 150 K 0.10 × 0.07 × 0.04 mm

Data collection

Bruker X8 KappaCCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.985, T max = 0.994 4474 measured reflections 1797 independent reflections 1433 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.202 S = 1.24 1797 reflections 202 parameters 13 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 2005 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681102811X/tk2764sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681102811X/tk2764Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681102811X/tk2764Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H4N4O2·0.5H2OZ = 4
Mr = 137.11F(000) = 284
Triclinic, P1Dx = 1.755 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.5440 (11) ÅCell parameters from 2284 reflections
b = 6.9490 (8) Åθ = 3.0–26.5°
c = 12.0723 (17) ŵ = 0.15 mm1
α = 93.976 (7)°T = 150 K
β = 105.012 (9)°Block, colourless
γ = 99.703 (8)°0.10 × 0.07 × 0.04 mm
V = 518.96 (13) Å3
Bruker X8 KappaCCD APEXII diffractometer1797 independent reflections
Radiation source: fine-focus sealed tube1433 reflections with I > 2σ(I)
graphiteRint = 0.032
ω and φ scansθmax = 25.3°, θmin = 3.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −7→7
Tmin = 0.985, Tmax = 0.994k = −8→8
4474 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.202H atoms treated by a mixture of independent and constrained refinement
S = 1.24w = 1/[σ2(Fo2) + (0.053P)2 + 2.637P] where P = (Fo2 + 2Fc2)/3
1797 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.42 e Å3
13 restraintsΔρmin = −0.46 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2627 (6)0.4287 (5)1.1942 (3)0.0210 (8)
O20.2494 (6)0.6539 (5)1.0686 (3)0.0204 (8)
C10.2566 (8)0.4869 (7)1.0970 (4)0.0181 (11)
C20.2597 (8)0.3319 (7)1.0033 (4)0.0145 (10)
C30.2551 (8)0.2009 (7)0.8332 (4)0.0151 (10)
N10.2483 (7)0.3692 (6)0.8926 (3)0.0156 (9)
H10.230 (9)0.492 (4)0.867 (5)0.023*
N20.2760 (7)0.1506 (6)1.0170 (3)0.0190 (10)
N30.2736 (7)0.0699 (6)0.9090 (3)0.0180 (9)
H30.262 (9)−0.066 (2)0.887 (5)0.027*
N40.2452 (7)0.1709 (6)0.7223 (3)0.0185 (10)
H4A0.234 (9)0.266 (5)0.670 (3)0.028*
H4B0.251 (9)0.049 (3)0.685 (3)0.028*
O30.2553 (6)0.3765 (5)0.4390 (3)0.0227 (9)
O40.2348 (6)0.5057 (5)0.6096 (3)0.0219 (9)
C40.2476 (8)0.5132 (7)0.5087 (4)0.0151 (10)
C50.2534 (8)0.7084 (7)0.4618 (4)0.0146 (10)
C60.2720 (8)0.9152 (7)0.3368 (4)0.0146 (10)
N50.2730 (7)0.7267 (6)0.3525 (3)0.0149 (9)
H50.272 (9)0.622 (5)0.298 (4)0.022*
N60.2409 (7)0.8740 (6)0.5147 (3)0.0167 (9)
N70.2527 (7)1.0044 (6)0.4344 (3)0.0157 (9)
H70.248 (9)1.139 (3)0.452 (5)0.024*
N80.2862 (8)0.9965 (6)0.2414 (4)0.0232 (10)
H8A0.274 (10)0.918 (6)0.172 (2)0.035*
H8B0.276 (10)1.127 (3)0.228 (4)0.035*
O1W0.1593 (6)0.7013 (5)0.7849 (3)0.0225 (9)
H1X0.009 (2)0.672 (8)0.775 (4)0.034*
H1Y0.194 (7)0.645 (8)0.720 (3)0.034*
U11U22U33U12U13U23
O10.036 (2)0.0223 (19)0.0072 (17)0.0083 (16)0.0077 (15)0.0024 (14)
O20.030 (2)0.0150 (18)0.0164 (18)0.0058 (15)0.0074 (16)0.0005 (14)
C10.016 (3)0.018 (3)0.020 (3)0.004 (2)0.005 (2)−0.002 (2)
C20.018 (3)0.016 (2)0.010 (2)0.004 (2)0.0032 (19)0.0037 (19)
C30.016 (3)0.014 (2)0.014 (2)0.004 (2)0.002 (2)0.0019 (19)
N10.023 (2)0.0101 (19)0.015 (2)0.0050 (17)0.0064 (17)0.0020 (16)
N20.029 (2)0.019 (2)0.009 (2)0.0048 (19)0.0049 (18)0.0018 (17)
N30.030 (2)0.013 (2)0.012 (2)0.0046 (18)0.0065 (18)0.0002 (17)
N40.035 (3)0.015 (2)0.009 (2)0.0097 (19)0.0079 (19)0.0047 (17)
O30.040 (2)0.0126 (17)0.0193 (19)0.0071 (16)0.0121 (17)0.0045 (15)
O40.037 (2)0.0174 (18)0.0149 (19)0.0090 (16)0.0099 (16)0.0077 (14)
C40.022 (3)0.013 (2)0.011 (3)0.005 (2)0.005 (2)0.0067 (19)
C50.018 (3)0.014 (2)0.012 (2)0.004 (2)0.006 (2)0.0017 (19)
C60.018 (2)0.013 (2)0.014 (2)0.005 (2)0.004 (2)0.0044 (19)
N50.025 (2)0.011 (2)0.011 (2)0.0052 (17)0.0065 (17)0.0043 (16)
N60.023 (2)0.015 (2)0.013 (2)0.0035 (17)0.0045 (18)0.0066 (17)
N70.024 (2)0.0088 (19)0.015 (2)0.0058 (17)0.0059 (18)0.0024 (16)
N80.038 (3)0.018 (2)0.017 (2)0.009 (2)0.011 (2)0.0064 (18)
O1W0.033 (2)0.0174 (18)0.0194 (19)0.0064 (16)0.0098 (16)−0.0001 (15)
O1—C11.260 (6)O4—C41.246 (6)
O2—C11.238 (6)C4—C51.504 (6)
C1—C21.513 (7)C5—N61.302 (6)
C2—N21.300 (6)C5—N51.370 (6)
C2—N11.364 (6)C6—N81.335 (6)
C3—N41.324 (6)C6—N51.337 (6)
C3—N31.332 (6)C6—N71.339 (6)
C3—N11.343 (6)N5—H50.947 (10)
N1—H10.946 (11)N6—N71.380 (5)
N2—N31.378 (6)N7—H70.948 (10)
N3—H30.947 (11)N8—H8A0.944 (10)
N4—H4A0.943 (10)N8—H8B0.944 (10)
N4—H4B0.944 (10)O1W—H1X0.946 (10)
O3—C41.241 (6)O1W—H1Y0.945 (10)
O2—C1—O1128.4 (4)O3—C4—C5114.0 (4)
O2—C1—C2116.0 (4)O4—C4—C5118.2 (4)
O1—C1—C2115.5 (4)N6—C5—N5112.4 (4)
N2—C2—N1111.7 (4)N6—C5—C4126.8 (4)
N2—C2—C1125.4 (4)N5—C5—C4120.8 (4)
N1—C2—C1122.9 (4)N8—C6—N5126.1 (4)
N4—C3—N3127.0 (5)N8—C6—N7127.1 (4)
N4—C3—N1127.2 (4)N5—C6—N7106.7 (4)
N3—C3—N1105.8 (4)C6—N5—C5106.3 (4)
C3—N1—C2107.2 (4)C6—N5—H5128 (3)
C3—N1—H1130 (3)C5—N5—H5126 (3)
C2—N1—H1123 (3)C5—N6—N7103.5 (4)
C2—N2—N3103.7 (4)C6—N7—N6111.1 (4)
C3—N3—N2111.6 (4)C6—N7—H7128 (3)
C3—N3—H3123 (3)N6—N7—H7121 (3)
N2—N3—H3125 (3)C6—N8—H8A121 (3)
C3—N4—H4A126 (3)C6—N8—H8B127 (3)
C3—N4—H4B123 (3)H8A—N8—H8B111 (4)
H4A—N4—H4B110.9 (16)H1X—O1W—H1Y111 (4)
O3—C4—O4127.8 (4)
O2—C1—C2—N2177.0 (5)O3—C4—C5—N6177.7 (5)
O1—C1—C2—N2−2.7 (7)O4—C4—C5—N6−1.9 (8)
O2—C1—C2—N1−2.0 (7)O3—C4—C5—N5−2.0 (7)
O1—C1—C2—N1178.2 (5)O4—C4—C5—N5178.3 (5)
N4—C3—N1—C2179.0 (5)N8—C6—N5—C5−179.5 (5)
N3—C3—N1—C2−1.0 (5)N7—C6—N5—C50.1 (5)
N2—C2—N1—C30.8 (6)N6—C5—N5—C6−0.1 (6)
C1—C2—N1—C3180.0 (4)C4—C5—N5—C6179.7 (4)
N1—C2—N2—N3−0.3 (6)N5—C5—N6—N70.1 (5)
C1—C2—N2—N3−179.5 (5)C4—C5—N6—N7−179.7 (5)
N4—C3—N3—N2−179.1 (5)N8—C6—N7—N6179.6 (5)
N1—C3—N3—N20.8 (6)N5—C6—N7—N60.0 (5)
C2—N2—N3—C3−0.3 (6)C5—N6—N7—C6−0.1 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1W0.95 (1)1.87 (2)2.799 (5)167 (5)
N3—H3···O1Wi0.95 (1)1.87 (3)2.758 (5)154 (5)
N4—H4A···O40.94 (1)1.86 (2)2.777 (5)163 (4)
N4—H4B···N6i0.94 (1)2.29 (3)3.125 (6)146 (4)
N5—H5···O1ii0.95 (1)1.75 (1)2.699 (5)178 (5)
N7—H7···O3iii0.95 (1)1.66 (2)2.579 (5)161 (5)
N8—H8A···O2ii0.94 (1)2.10 (2)2.989 (5)155 (4)
N8—H8B···O1iv0.94 (1)2.17 (1)3.117 (5)178 (5)
O1W—H1X···O1v0.95 (1)1.94 (2)2.839 (5)159 (5)
O1W—H1Y···O40.95 (1)1.70 (2)2.634 (5)170 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1W0.95 (1)1.87 (2)2.799 (5)167 (5)
N3—H3⋯O1Wi0.95 (1)1.87 (3)2.758 (5)154 (5)
N4—H4A⋯O40.94 (1)1.86 (2)2.777 (5)163 (4)
N4—H4B⋯N6i0.94 (1)2.29 (3)3.125 (6)146 (4)
N5—H5⋯O1ii0.95 (1)1.75 (1)2.699 (5)178 (5)
N7—H7⋯O3iii0.95 (1)1.66 (2)2.579 (5)161 (5)
N8—H8A⋯O2ii0.94 (1)2.10 (2)2.989 (5)155 (4)
N8—H8B⋯O1iv0.94 (1)2.17 (1)3.117 (5)178 (5)
O1W—H1X⋯O1v0.95 (1)1.94 (2)2.839 (5)159 (5)
O1W—H1Y⋯O40.95 (1)1.70 (2)2.634 (5)170 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
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4.  2-(1H-Pyrazol-3-yl)pyridinium chloride monohydrate.

Authors:  Tatiana R Amarante; Isabel S Gonçalves; Filipe A Almeida Paz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-25

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Authors:  Tatiana R Amarante; Sónia Figueiredo; André D Lopes; Isabel S Gonçalves; Filipe A Almeida Paz
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7.  Bis(5-amino-3-carb-oxy-1H-1,2,4-triazol-4-ium) sulfate dihydrate.

Authors:  Amira Ouakkaf; Fadila Berrah; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16
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  3 in total

1.  Bis(5-amino-3-carb-oxy-1H-1,2,4-triazol-4-ium) dihydrogenphosphate nitrate 5-amino-1H-1,2,4-triazol-4-ium-3-carboxyl-ate.

Authors:  Fadila Berrah; Rafika Bouchene; Sofiane Bouacida; Jean-Claude Daran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-06

2.  5-Amino-3-(4H-1,2,4-triazol-4-yl)-1H-1,2,4-triazole.

Authors:  Bing Liu; João P C Tomé; Luís Cunha-Silva; Filipe A Almeida Paz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-11

3.  5-Amino-3-carb-oxy-1H-1,2,4-triazol-4-ium nitrate monohydrate.

Authors:  Fadila Berrah; Rafika Bouchene; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-21
  3 in total

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