| Literature DB >> 22091097 |
José A Fernandes, Bing Liu, João P C Tomé, Luís Cunha-Silva, Filipe A Almeida Paz.
Abstract
The asymmetric unit of the title compound, C(3)H(4)N(4)O(2)·0.5H(2)O, comprises two whole mol-ecules of 5-amino-1H-1,2,4-triazole-3-carb-oxy-lic acid in its zwitterionic form (proton transfer occurs from the carb-oxy-lic acid group to the N hetero-atom at position 1), plus one water mol-ecule of crystallization. The organic moieties are disposed into supra-molecular layers linked by N-H⋯O and N-H⋯N hydrogen bonds parallel to the bc plane. Additional O-H⋯O and N-H⋯O hydrogen bonds involving the water mol-ecules and the organic mol-ecules lead to the formation of double-deck supra-molecular arrangements which are inter-connected along the a axis via π-π stacking [centroid-centroid distance = 3.507 (3) Å].Entities:
Year: 2011 PMID: 22091097 PMCID: PMC3213518 DOI: 10.1107/S160053681102811X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H4N4O2·0.5H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2284 reflections | |
| θ = 3.0–26.5° | |
| µ = 0.15 mm−1 | |
| α = 93.976 (7)° | |
| β = 105.012 (9)° | Block, colourless |
| γ = 99.703 (8)° | 0.10 × 0.07 × 0.04 mm |
| Bruker X8 KappaCCD APEXII diffractometer | 1797 independent reflections |
| Radiation source: fine-focus sealed tube | 1433 reflections with |
| graphite | |
| ω and φ scans | θmax = 25.3°, θmin = 3.7° |
| Absorption correction: multi-scan ( | |
| 4474 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1797 reflections | (Δ/σ)max < 0.001 |
| 202 parameters | Δρmax = 0.42 e Å−3 |
| 13 restraints | Δρmin = −0.46 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.2627 (6) | 0.4287 (5) | 1.1942 (3) | 0.0210 (8) | |
| O2 | 0.2494 (6) | 0.6539 (5) | 1.0686 (3) | 0.0204 (8) | |
| C1 | 0.2566 (8) | 0.4869 (7) | 1.0970 (4) | 0.0181 (11) | |
| C2 | 0.2597 (8) | 0.3319 (7) | 1.0033 (4) | 0.0145 (10) | |
| C3 | 0.2551 (8) | 0.2009 (7) | 0.8332 (4) | 0.0151 (10) | |
| N1 | 0.2483 (7) | 0.3692 (6) | 0.8926 (3) | 0.0156 (9) | |
| H1 | 0.230 (9) | 0.492 (4) | 0.867 (5) | 0.023* | |
| N2 | 0.2760 (7) | 0.1506 (6) | 1.0170 (3) | 0.0190 (10) | |
| N3 | 0.2736 (7) | 0.0699 (6) | 0.9090 (3) | 0.0180 (9) | |
| H3 | 0.262 (9) | −0.066 (2) | 0.887 (5) | 0.027* | |
| N4 | 0.2452 (7) | 0.1709 (6) | 0.7223 (3) | 0.0185 (10) | |
| H4A | 0.234 (9) | 0.266 (5) | 0.670 (3) | 0.028* | |
| H4B | 0.251 (9) | 0.049 (3) | 0.685 (3) | 0.028* | |
| O3 | 0.2553 (6) | 0.3765 (5) | 0.4390 (3) | 0.0227 (9) | |
| O4 | 0.2348 (6) | 0.5057 (5) | 0.6096 (3) | 0.0219 (9) | |
| C4 | 0.2476 (8) | 0.5132 (7) | 0.5087 (4) | 0.0151 (10) | |
| C5 | 0.2534 (8) | 0.7084 (7) | 0.4618 (4) | 0.0146 (10) | |
| C6 | 0.2720 (8) | 0.9152 (7) | 0.3368 (4) | 0.0146 (10) | |
| N5 | 0.2730 (7) | 0.7267 (6) | 0.3525 (3) | 0.0149 (9) | |
| H5 | 0.272 (9) | 0.622 (5) | 0.298 (4) | 0.022* | |
| N6 | 0.2409 (7) | 0.8740 (6) | 0.5147 (3) | 0.0167 (9) | |
| N7 | 0.2527 (7) | 1.0044 (6) | 0.4344 (3) | 0.0157 (9) | |
| H7 | 0.248 (9) | 1.139 (3) | 0.452 (5) | 0.024* | |
| N8 | 0.2862 (8) | 0.9965 (6) | 0.2414 (4) | 0.0232 (10) | |
| H8A | 0.274 (10) | 0.918 (6) | 0.172 (2) | 0.035* | |
| H8B | 0.276 (10) | 1.127 (3) | 0.228 (4) | 0.035* | |
| O1W | 0.1593 (6) | 0.7013 (5) | 0.7849 (3) | 0.0225 (9) | |
| H1X | 0.009 (2) | 0.672 (8) | 0.775 (4) | 0.034* | |
| H1Y | 0.194 (7) | 0.645 (8) | 0.720 (3) | 0.034* |
| O1 | 0.036 (2) | 0.0223 (19) | 0.0072 (17) | 0.0083 (16) | 0.0077 (15) | 0.0024 (14) |
| O2 | 0.030 (2) | 0.0150 (18) | 0.0164 (18) | 0.0058 (15) | 0.0074 (16) | 0.0005 (14) |
| C1 | 0.016 (3) | 0.018 (3) | 0.020 (3) | 0.004 (2) | 0.005 (2) | −0.002 (2) |
| C2 | 0.018 (3) | 0.016 (2) | 0.010 (2) | 0.004 (2) | 0.0032 (19) | 0.0037 (19) |
| C3 | 0.016 (3) | 0.014 (2) | 0.014 (2) | 0.004 (2) | 0.002 (2) | 0.0019 (19) |
| N1 | 0.023 (2) | 0.0101 (19) | 0.015 (2) | 0.0050 (17) | 0.0064 (17) | 0.0020 (16) |
| N2 | 0.029 (2) | 0.019 (2) | 0.009 (2) | 0.0048 (19) | 0.0049 (18) | 0.0018 (17) |
| N3 | 0.030 (2) | 0.013 (2) | 0.012 (2) | 0.0046 (18) | 0.0065 (18) | 0.0002 (17) |
| N4 | 0.035 (3) | 0.015 (2) | 0.009 (2) | 0.0097 (19) | 0.0079 (19) | 0.0047 (17) |
| O3 | 0.040 (2) | 0.0126 (17) | 0.0193 (19) | 0.0071 (16) | 0.0121 (17) | 0.0045 (15) |
| O4 | 0.037 (2) | 0.0174 (18) | 0.0149 (19) | 0.0090 (16) | 0.0099 (16) | 0.0077 (14) |
| C4 | 0.022 (3) | 0.013 (2) | 0.011 (3) | 0.005 (2) | 0.005 (2) | 0.0067 (19) |
| C5 | 0.018 (3) | 0.014 (2) | 0.012 (2) | 0.004 (2) | 0.006 (2) | 0.0017 (19) |
| C6 | 0.018 (2) | 0.013 (2) | 0.014 (2) | 0.005 (2) | 0.004 (2) | 0.0044 (19) |
| N5 | 0.025 (2) | 0.011 (2) | 0.011 (2) | 0.0052 (17) | 0.0065 (17) | 0.0043 (16) |
| N6 | 0.023 (2) | 0.015 (2) | 0.013 (2) | 0.0035 (17) | 0.0045 (18) | 0.0066 (17) |
| N7 | 0.024 (2) | 0.0088 (19) | 0.015 (2) | 0.0058 (17) | 0.0059 (18) | 0.0024 (16) |
| N8 | 0.038 (3) | 0.018 (2) | 0.017 (2) | 0.009 (2) | 0.011 (2) | 0.0064 (18) |
| O1W | 0.033 (2) | 0.0174 (18) | 0.0194 (19) | 0.0064 (16) | 0.0098 (16) | −0.0001 (15) |
| O1—C1 | 1.260 (6) | O4—C4 | 1.246 (6) |
| O2—C1 | 1.238 (6) | C4—C5 | 1.504 (6) |
| C1—C2 | 1.513 (7) | C5—N6 | 1.302 (6) |
| C2—N2 | 1.300 (6) | C5—N5 | 1.370 (6) |
| C2—N1 | 1.364 (6) | C6—N8 | 1.335 (6) |
| C3—N4 | 1.324 (6) | C6—N5 | 1.337 (6) |
| C3—N3 | 1.332 (6) | C6—N7 | 1.339 (6) |
| C3—N1 | 1.343 (6) | N5—H5 | 0.947 (10) |
| N1—H1 | 0.946 (11) | N6—N7 | 1.380 (5) |
| N2—N3 | 1.378 (6) | N7—H7 | 0.948 (10) |
| N3—H3 | 0.947 (11) | N8—H8A | 0.944 (10) |
| N4—H4A | 0.943 (10) | N8—H8B | 0.944 (10) |
| N4—H4B | 0.944 (10) | O1W—H1X | 0.946 (10) |
| O3—C4 | 1.241 (6) | O1W—H1Y | 0.945 (10) |
| O2—C1—O1 | 128.4 (4) | O3—C4—C5 | 114.0 (4) |
| O2—C1—C2 | 116.0 (4) | O4—C4—C5 | 118.2 (4) |
| O1—C1—C2 | 115.5 (4) | N6—C5—N5 | 112.4 (4) |
| N2—C2—N1 | 111.7 (4) | N6—C5—C4 | 126.8 (4) |
| N2—C2—C1 | 125.4 (4) | N5—C5—C4 | 120.8 (4) |
| N1—C2—C1 | 122.9 (4) | N8—C6—N5 | 126.1 (4) |
| N4—C3—N3 | 127.0 (5) | N8—C6—N7 | 127.1 (4) |
| N4—C3—N1 | 127.2 (4) | N5—C6—N7 | 106.7 (4) |
| N3—C3—N1 | 105.8 (4) | C6—N5—C5 | 106.3 (4) |
| C3—N1—C2 | 107.2 (4) | C6—N5—H5 | 128 (3) |
| C3—N1—H1 | 130 (3) | C5—N5—H5 | 126 (3) |
| C2—N1—H1 | 123 (3) | C5—N6—N7 | 103.5 (4) |
| C2—N2—N3 | 103.7 (4) | C6—N7—N6 | 111.1 (4) |
| C3—N3—N2 | 111.6 (4) | C6—N7—H7 | 128 (3) |
| C3—N3—H3 | 123 (3) | N6—N7—H7 | 121 (3) |
| N2—N3—H3 | 125 (3) | C6—N8—H8A | 121 (3) |
| C3—N4—H4A | 126 (3) | C6—N8—H8B | 127 (3) |
| C3—N4—H4B | 123 (3) | H8A—N8—H8B | 111 (4) |
| H4A—N4—H4B | 110.9 (16) | H1X—O1W—H1Y | 111 (4) |
| O3—C4—O4 | 127.8 (4) | ||
| O2—C1—C2—N2 | 177.0 (5) | O3—C4—C5—N6 | 177.7 (5) |
| O1—C1—C2—N2 | −2.7 (7) | O4—C4—C5—N6 | −1.9 (8) |
| O2—C1—C2—N1 | −2.0 (7) | O3—C4—C5—N5 | −2.0 (7) |
| O1—C1—C2—N1 | 178.2 (5) | O4—C4—C5—N5 | 178.3 (5) |
| N4—C3—N1—C2 | 179.0 (5) | N8—C6—N5—C5 | −179.5 (5) |
| N3—C3—N1—C2 | −1.0 (5) | N7—C6—N5—C5 | 0.1 (5) |
| N2—C2—N1—C3 | 0.8 (6) | N6—C5—N5—C6 | −0.1 (6) |
| C1—C2—N1—C3 | 180.0 (4) | C4—C5—N5—C6 | 179.7 (4) |
| N1—C2—N2—N3 | −0.3 (6) | N5—C5—N6—N7 | 0.1 (5) |
| C1—C2—N2—N3 | −179.5 (5) | C4—C5—N6—N7 | −179.7 (5) |
| N4—C3—N3—N2 | −179.1 (5) | N8—C6—N7—N6 | 179.6 (5) |
| N1—C3—N3—N2 | 0.8 (6) | N5—C6—N7—N6 | 0.0 (5) |
| C2—N2—N3—C3 | −0.3 (6) | C5—N6—N7—C6 | −0.1 (5) |
| H··· | ||||
| N1—H1···O1W | 0.95 (1) | 1.87 (2) | 2.799 (5) | 167 (5) |
| N3—H3···O1Wi | 0.95 (1) | 1.87 (3) | 2.758 (5) | 154 (5) |
| N4—H4A···O4 | 0.94 (1) | 1.86 (2) | 2.777 (5) | 163 (4) |
| N4—H4B···N6i | 0.94 (1) | 2.29 (3) | 3.125 (6) | 146 (4) |
| N5—H5···O1ii | 0.95 (1) | 1.75 (1) | 2.699 (5) | 178 (5) |
| N7—H7···O3iii | 0.95 (1) | 1.66 (2) | 2.579 (5) | 161 (5) |
| N8—H8A···O2ii | 0.94 (1) | 2.10 (2) | 2.989 (5) | 155 (4) |
| N8—H8B···O1iv | 0.94 (1) | 2.17 (1) | 3.117 (5) | 178 (5) |
| O1W—H1X···O1v | 0.95 (1) | 1.94 (2) | 2.839 (5) | 159 (5) |
| O1W—H1Y···O4 | 0.95 (1) | 1.70 (2) | 2.634 (5) | 170 (5) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1 | 0.95 (1) | 1.87 (2) | 2.799 (5) | 167 (5) |
| N3—H3⋯O1 | 0.95 (1) | 1.87 (3) | 2.758 (5) | 154 (5) |
| N4—H4 | 0.94 (1) | 1.86 (2) | 2.777 (5) | 163 (4) |
| N4—H4 | 0.94 (1) | 2.29 (3) | 3.125 (6) | 146 (4) |
| N5—H5⋯O1ii | 0.95 (1) | 1.75 (1) | 2.699 (5) | 178 (5) |
| N7—H7⋯O3iii | 0.95 (1) | 1.66 (2) | 2.579 (5) | 161 (5) |
| N8—H8 | 0.94 (1) | 2.10 (2) | 2.989 (5) | 155 (4) |
| N8—H8 | 0.94 (1) | 2.17 (1) | 3.117 (5) | 178 (5) |
| O1 | 0.95 (1) | 1.94 (2) | 2.839 (5) | 159 (5) |
| O1 | 0.95 (1) | 1.70 (2) | 2.634 (5) | 170 (5) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .