Literature DB >> 22590233

Bis(5-amino-3-carb-oxy-1H-1,2,4-triazol-4-ium) dihydrogenphosphate nitrate 5-amino-1H-1,2,4-triazol-4-ium-3-carboxyl-ate.

Fadila Berrah, Rafika Bouchene, Sofiane Bouacida, Jean-Claude Daran.   

Abstract

In the title compound, 2C(3)H(5)N(4)O(2) (+)·H(2)PO(4) (-)·NO(3) (-)·C(3)H(4)N(4)O(2), three independent 5-amino-1H-1,2,4-triazol-3-carb-oxy-lic acid moieties are observed. Two are in the form of cations, while the third is in the zwitterionic form. The triazole rings in the two cations are almost coplanar, making an angle of 4.11 (7)°. Layers parallel to the (20-1) plane, resulting from hydrogen bonding of the organic mol-ecules and the nitrate anions, are linked via H(2)PO(4) (-) infinite zigzag chains running parallel to the c axis. The crystal studied was an inversion twin, with refined components of 0.33 (7) and 0.67 (7).

Entities:  

Year:  2012        PMID: 22590233      PMCID: PMC3344471          DOI: 10.1107/S1600536812014481

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural studies of related compounds, see: Berrah et al. (2011 ▶, 2012 ▶); Fernandes et al. (2011 ▶); Ouakkaf et al. (2011 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Grell et al. (1999 ▶).

Experimental

Crystal data

2C3H5N4O2 +·NO3 −·H2PO4 −·C3H4N4O2 M = 545.32 Monoclinic, a = 19.2249 (13) Å b = 13.2036 (7) Å c = 7.7468 (5) Å β = 101.079 (7)° V = 1929.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 180 K 0.45 × 0.43 × 0.16 mm

Data collection

Agilent Xcalibur Sapphire1 long-nozzle diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.832, T max = 1.000 10050 measured reflections 3836 independent reflections 3735 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.067 S = 1.05 3836 reflections 330 parameters 2 restraints H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: Flack (1983 ▶), 1858 Friedel pairs Flack parameter: 0.33 (7) Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812014481/fj2538sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812014481/fj2538Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812014481/fj2538Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C3H5N4O2+·NO3·H2PO4·C3H4N4O2F(000) = 1120
Mr = 545.32Dx = 1.877 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
a = 19.2249 (13) ÅCell parameters from 8428 reflections
b = 13.2036 (7) Åθ = 3.1–28.3°
c = 7.7468 (5) ŵ = 0.25 mm1
β = 101.079 (7)°T = 180 K
V = 1929.8 (2) Å3Box, colourless
Z = 40.45 × 0.43 × 0.16 mm
Agilent Xcalibur Sapphire1 long-nozzle diffractometer3836 independent reflections
Radiation source: fine-focus sealed tube3735 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 8.2632 pixels mm-1θmax = 26.4°, θmin = 3.1°
ω scansh = −24→23
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −16→16
Tmin = 0.832, Tmax = 1.000l = −9→9
10050 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0378P)2 + 0.9492P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.008
3836 reflectionsΔρmax = 0.23 e Å3
330 parametersΔρmin = −0.27 e Å3
2 restraintsAbsolute structure: Flack (1983), 1858 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.33 (7)
Experimental. Absorption correction: empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent Technologies, 2011)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O60.41566 (8)1.31611 (10)0.5894 (2)0.0222 (3)
N3C0.18588 (9)1.43700 (13)0.1472 (2)0.0236 (4)
O1C0.30311 (8)1.62763 (11)0.3449 (2)0.0272 (3)
N1B0.58554 (9)1.25858 (12)0.9762 (2)0.0217 (4)
H5B0.62161.25551.0610.026*
H3B0.56771.31640.94050.026*
N4C0.28426 (9)1.41292 (12)0.3399 (2)0.0201 (4)
H4C0.32331.42650.41110.024*
N10.43355 (9)1.40196 (12)0.6489 (2)0.0184 (3)
C3C0.25660 (10)1.32115 (15)0.3022 (3)0.0187 (4)
O2C0.19992 (9)1.64211 (12)0.1575 (2)0.0349 (4)
N2C0.19719 (9)1.33628 (12)0.1833 (2)0.0219 (4)
H2C0.16951.28860.13560.026*
O70.48583 (8)1.41235 (11)0.7696 (2)0.0276 (3)
C1C0.24818 (11)1.59375 (15)0.2508 (3)0.0215 (4)
O50.39976 (9)1.47811 (11)0.5845 (2)0.0313 (4)
N1C0.28090 (10)1.23307 (13)0.3647 (2)0.0266 (4)
H5C0.31981.22970.44080.032*
H3C0.25791.17860.32960.032*
C2C0.23928 (11)1.48136 (15)0.2447 (3)0.0202 (4)
P10.27249 (3)0.89899 (3)0.30351 (6)0.01592 (11)
O2B0.43278 (7)0.92432 (10)0.59606 (18)0.0210 (3)
N2B0.57956 (9)1.08016 (13)0.9423 (2)0.0198 (3)
H2B0.61521.06541.02380.024*
N4B0.50067 (9)1.16518 (12)0.7706 (2)0.0167 (3)
H4B0.4751.21350.71820.02*
N3B0.53912 (9)1.01015 (12)0.8405 (2)0.0194 (3)
C2B0.49164 (10)1.06425 (14)0.7377 (2)0.0167 (4)
C3B0.55750 (10)1.17458 (15)0.9007 (2)0.0159 (4)
O30.30722 (7)0.99921 (10)0.27601 (17)0.0198 (3)
C3A0.47957 (10)1.70083 (15)0.7432 (3)0.0186 (4)
O20.32459 (7)0.81370 (10)0.2805 (2)0.0247 (3)
H20.3090.75930.30720.037*
O10.20396 (9)0.88190 (12)0.1753 (3)0.0359 (4)
N3A0.56813 (9)1.75022 (12)0.9580 (2)0.0189 (3)
N2A0.51436 (9)1.78030 (13)0.8257 (2)0.0202 (3)
H2A0.50421.84250.79880.024*
O2A0.65270 (7)1.62929 (11)1.20239 (19)0.0233 (3)
N1A0.42476 (10)1.70396 (14)0.6126 (2)0.0266 (4)
H5A0.40791.76140.5720.032*
H3A0.40581.64860.56770.032*
C1B0.43737 (10)1.01611 (14)0.6006 (3)0.0164 (4)
N4A0.51196 (9)1.61845 (12)0.8229 (2)0.0181 (3)
H4A0.50141.55630.79660.022*
O1B0.40060 (7)1.08030 (10)0.49496 (18)0.0185 (3)
H1B0.37091.050.42340.028*
O40.25679 (10)0.89062 (14)0.4902 (2)0.0431 (5)
H40.27660.93690.5510.065*
O1A0.60814 (8)1.49336 (11)1.0444 (2)0.0267 (3)
H1A0.64261.46311.09940.04*
C1A0.61377 (10)1.58682 (15)1.0807 (3)0.0180 (4)
C2A0.56512 (10)1.65246 (15)0.9543 (3)0.0174 (4)
U11U22U33U12U13U23
O60.0208 (7)0.0113 (6)0.0303 (7)−0.0030 (5)−0.0055 (6)−0.0021 (6)
N3C0.0210 (9)0.0151 (8)0.0305 (10)−0.0020 (7)−0.0057 (8)0.0017 (7)
O1C0.0224 (8)0.0126 (7)0.0398 (9)−0.0015 (6)−0.0109 (7)0.0016 (6)
N1B0.0206 (9)0.0172 (8)0.0232 (8)−0.0014 (7)−0.0061 (7)0.0008 (7)
N4C0.0175 (9)0.0147 (8)0.0243 (9)−0.0010 (6)−0.0059 (7)0.0012 (6)
N10.0166 (8)0.0133 (8)0.0235 (8)0.0012 (6)−0.0006 (7)0.0016 (6)
C3C0.0191 (10)0.0172 (9)0.0193 (9)−0.0020 (7)0.0020 (8)−0.0008 (7)
O2C0.0277 (8)0.0176 (8)0.0494 (10)0.0007 (7)−0.0172 (7)0.0056 (7)
N2C0.0192 (9)0.0122 (8)0.0302 (9)−0.0038 (6)−0.0056 (7)−0.0013 (7)
O70.0244 (8)0.0181 (7)0.0326 (8)0.0005 (6)−0.0138 (7)−0.0017 (6)
C1C0.0196 (10)0.0153 (10)0.0273 (11)0.0014 (8)−0.0012 (8)0.0028 (8)
O50.0286 (8)0.0129 (7)0.0439 (9)0.0020 (6)−0.0145 (7)0.0045 (6)
N1C0.0271 (10)0.0136 (8)0.0333 (10)−0.0019 (7)−0.0091 (8)0.0001 (7)
C2C0.0171 (9)0.0180 (10)0.0230 (10)−0.0005 (8)−0.0024 (8)0.0012 (8)
P10.0149 (2)0.0125 (2)0.0184 (2)−0.0002 (2)−0.00181 (17)−0.00174 (19)
O2B0.0221 (7)0.0141 (7)0.0247 (7)−0.0016 (5)−0.0009 (6)−0.0013 (6)
N2B0.0176 (8)0.0166 (8)0.0211 (8)0.0007 (6)−0.0062 (7)0.0024 (6)
N4B0.0166 (8)0.0137 (8)0.0174 (8)0.0017 (6)−0.0024 (6)0.0021 (6)
N3B0.0182 (8)0.0160 (8)0.0216 (8)0.0006 (7)−0.0019 (7)0.0008 (6)
C2B0.0171 (9)0.0157 (9)0.0169 (9)0.0012 (7)0.0027 (8)0.0018 (7)
C3B0.0124 (8)0.0189 (9)0.0155 (9)−0.0011 (7)0.0007 (7)0.0011 (7)
O30.0214 (7)0.0151 (6)0.0197 (7)−0.0021 (5)−0.0041 (6)0.0010 (5)
C3A0.0188 (9)0.0161 (10)0.0199 (10)0.0015 (7)0.0014 (8)−0.0001 (7)
O20.0193 (7)0.0136 (6)0.0412 (9)0.0006 (5)0.0063 (6)0.0013 (6)
O10.0266 (8)0.0177 (8)0.0519 (10)0.0006 (6)−0.0217 (8)−0.0017 (7)
N3A0.0194 (8)0.0145 (8)0.0215 (8)0.0002 (6)0.0006 (7)−0.0010 (6)
N2A0.0226 (9)0.0121 (7)0.0239 (8)0.0019 (6)−0.0006 (7)0.0013 (6)
O2A0.0202 (7)0.0217 (7)0.0249 (7)−0.0009 (6)−0.0033 (6)−0.0024 (6)
N1A0.0279 (10)0.0158 (9)0.0311 (10)0.0014 (7)−0.0072 (8)0.0009 (7)
C1B0.0161 (9)0.0146 (9)0.0191 (9)0.0012 (7)0.0047 (7)−0.0001 (7)
N4A0.0184 (9)0.0107 (8)0.0232 (8)0.0004 (6)−0.0009 (7)−0.0019 (6)
O1B0.0181 (7)0.0147 (6)0.0194 (7)−0.0009 (5)−0.0042 (5)0.0000 (5)
O40.0594 (12)0.0425 (11)0.0327 (9)−0.0305 (9)0.0219 (9)−0.0148 (7)
O1A0.0214 (7)0.0154 (7)0.0358 (8)0.0041 (6)−0.0132 (7)−0.0001 (6)
C1A0.0134 (9)0.0166 (9)0.0228 (10)−0.0001 (7)0.0003 (8)−0.0010 (7)
C2A0.0149 (9)0.0168 (9)0.0201 (9)−0.0003 (7)0.0020 (7)−0.0022 (7)
O6—N11.247 (2)N2B—N3B1.358 (2)
N3C—C2C1.292 (3)N2B—H2B0.86
N3C—N2C1.368 (2)N4B—C3B1.342 (3)
O1C—C1C1.245 (3)N4B—C2B1.362 (3)
N1B—C3B1.320 (3)N4B—H4B0.86
N1B—H5B0.86N3B—C2B1.303 (3)
N1B—H3B0.86C2B—C1B1.482 (3)
N4C—C3C1.333 (3)C3A—N1A1.314 (3)
N4C—C2C1.365 (3)C3A—N2A1.339 (3)
N4C—H4C0.86C3A—N4A1.343 (2)
N1—O71.241 (2)O2—H20.82
N1—O51.248 (2)N3A—C2A1.292 (3)
C3C—N1C1.311 (3)N3A—N2A1.367 (2)
C3C—N2C1.337 (3)N2A—H2A0.86
O2C—C1C1.238 (3)O2A—C1A1.222 (2)
N2C—H2C0.86N1A—H5A0.86
C1C—C2C1.493 (3)N1A—H3A0.86
N1C—H5C0.86C1B—O1B1.290 (2)
N1C—H3C0.86N4A—C2A1.372 (3)
P1—O11.5068 (16)N4A—H4A0.86
P1—O31.5156 (14)O1B—H1B0.82
P1—O41.5371 (16)O4—H40.82
P1—O21.5402 (14)O1A—C1A1.266 (2)
O2B—C1B1.215 (2)O1A—H1A0.82
N2B—C3B1.336 (3)C1A—C2A1.494 (3)
C2C—N3C—N2C104.11 (16)C3B—N4B—H4B126.7
C3B—N1B—H5B120C2B—N4B—H4B126.7
C3B—N1B—H3B120C2B—N3B—N2B103.72 (16)
H5B—N1B—H3B120N3B—C2B—N4B111.91 (17)
C3C—N4C—C2C107.38 (17)N3B—C2B—C1B121.13 (17)
C3C—N4C—H4C126.3N4B—C2B—C1B126.94 (17)
C2C—N4C—H4C126.3N1B—C3B—N2B126.42 (18)
O7—N1—O6120.32 (16)N1B—C3B—N4B127.92 (18)
O7—N1—O5119.72 (16)N2B—C3B—N4B105.64 (17)
O6—N1—O5119.94 (18)N1A—C3A—N2A126.59 (19)
N1C—C3C—N4C128.80 (19)N1A—C3A—N4A127.73 (19)
N1C—C3C—N2C125.70 (18)N2A—C3A—N4A105.69 (17)
N4C—C3C—N2C105.49 (17)P1—O2—H2109.5
C3C—N2C—N3C111.56 (16)C2A—N3A—N2A104.42 (16)
C3C—N2C—H2C124.2C3A—N2A—N3A111.50 (16)
N3C—N2C—H2C124.2C3A—N2A—H2A124.3
O2C—C1C—O1C127.77 (19)N3A—N2A—H2A124.3
O2C—C1C—C2C115.2 (2)C3A—N1A—H5A120
O1C—C1C—C2C117.04 (18)C3A—N1A—H3A120
C3C—N1C—H5C120H5A—N1A—H3A120
C3C—N1C—H3C120O2B—C1B—O1B127.51 (19)
H5C—N1C—H3C120O2B—C1B—C2B119.06 (18)
N3C—C2C—N4C111.43 (17)O1B—C1B—C2B113.41 (16)
N3C—C2C—C1C122.84 (19)C3A—N4A—C2A106.82 (16)
N4C—C2C—C1C125.72 (19)C3A—N4A—H4A126.6
O1—P1—O3113.02 (9)C2A—N4A—H4A126.6
O1—P1—O4107.73 (11)C1B—O1B—H1B109.5
O3—P1—O4111.50 (8)P1—O4—H4109.5
O1—P1—O2108.65 (9)C1A—O1A—H1A109.5
O3—P1—O2107.95 (8)O2A—C1A—O1A129.23 (19)
O4—P1—O2107.83 (10)O2A—C1A—C2A116.94 (17)
C3B—N2B—N3B112.03 (16)O1A—C1A—C2A113.83 (17)
C3B—N2B—H2B124N3A—C2A—N4A111.56 (18)
N3B—N2B—H2B124N3A—C2A—C1A123.02 (18)
C3B—N4B—C2B106.68 (16)N4A—C2A—C1A125.42 (17)
C2C—N4C—C3C—N1C−178.8 (2)C2B—N4B—C3B—N1B−179.47 (19)
C2C—N4C—C3C—N2C1.5 (2)C2B—N4B—C3B—N2B−0.86 (19)
N1C—C3C—N2C—N3C179.1 (2)N1A—C3A—N2A—N3A178.89 (19)
N4C—C3C—N2C—N3C−1.2 (2)N4A—C3A—N2A—N3A−0.6 (2)
C2C—N3C—N2C—C3C0.4 (2)C2A—N3A—N2A—C3A−0.1 (2)
N2C—N3C—C2C—N4C0.6 (2)N3B—C2B—C1B—O2B7.5 (3)
N2C—N3C—C2C—C1C−178.60 (19)N4B—C2B—C1B—O2B−174.60 (18)
C3C—N4C—C2C—N3C−1.3 (2)N3B—C2B—C1B—O1B−171.11 (17)
C3C—N4C—C2C—C1C177.8 (2)N4B—C2B—C1B—O1B6.8 (3)
O2C—C1C—C2C—N3C1.2 (3)N1A—C3A—N4A—C2A−178.5 (2)
O1C—C1C—C2C—N3C−177.4 (2)N2A—C3A—N4A—C2A1.0 (2)
O2C—C1C—C2C—N4C−177.9 (2)N2A—N3A—C2A—N4A0.8 (2)
O1C—C1C—C2C—N4C3.5 (3)N2A—N3A—C2A—C1A−178.54 (16)
C3B—N2B—N3B—C2B−0.7 (2)C3A—N4A—C2A—N3A−1.1 (2)
N2B—N3B—C2B—N4B0.1 (2)C3A—N4A—C2A—C1A178.15 (18)
N2B—N3B—C2B—C1B178.28 (17)O2A—C1A—C2A—N3A7.6 (3)
C3B—N4B—C2B—N3B0.5 (2)O1A—C1A—C2A—N3A−172.49 (19)
C3B—N4B—C2B—C1B−177.57 (19)O2A—C1A—C2A—N4A−171.63 (18)
N3B—N2B—C3B—N1B179.60 (19)O1A—C1A—C2A—N4A8.3 (3)
N3B—N2B—C3B—N4B1.0 (2)
D—H···AD—HH···AD···AD—H···A
N1B—H5B···O2Ci0.862.152.826 (2)135
N1B—H5B···O1ii0.862.352.977 (2)130
N1B—H3B···O70.862.243.030 (2)152
N1B—H3B···O1A0.862.543.161 (2)129
N4C—H4C···O50.861.922.765 (2)169
N4C—H4C···O60.862.53.142 (2)132
N4C—H4C···N10.862.553.369 (2)160
N2C—H2C···O2Aiii0.862.212.876 (2)135
N2C—H2C···N3Aiii0.862.222.971 (2)146
N1C—H5C···O60.862.283.035 (2)146
N1C—H5C···O1B0.862.53.081 (2)126
N1C—H3C···O2Aiii0.862.172.888 (2)140
N1C—H3C···O30.862.613.224 (2)129
N2B—H2B···O2Ci0.862.032.706 (2)135
N2B—H2B···N3Ci0.862.273.004 (2)144
N4B—H4B···O60.861.922.780 (2)177
N4B—H4B···O70.862.663.276 (2)130
N4B—H4B···N10.862.643.444 (2)157
O2—H2···O1Civ0.821.772.5563 (19)160
N2A—H2A···O2Bv0.862.172.858 (2)137
N2A—H2A···N3Bv0.862.323.071 (2)146
N1A—H5A···O2Bv0.862.22.918 (2)140
N1A—H5A···O2v0.862.63.244 (2)133
N1A—H3A···O50.862.263.022 (2)148
N1A—H3A···O1C0.862.382.987 (2)129
N4A—H4A···O70.861.932.784 (2)172
N4A—H4A···O50.862.523.157 (2)132
N4A—H4A···N10.862.573.388 (2)160
O1B—H1B···O30.821.652.4648 (19)175
O4—H4···O3vi0.821.922.671 (2)151
O1A—H1A···O1ii0.821.622.423 (2)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1B—H3B⋯O70.862.243.030 (2)152
N4C—H4C⋯O50.861.922.765 (2)169
N4B—H4B⋯O60.861.922.780 (2)177
O2—H2⋯O1Ci0.821.772.5563 (19)160
N4A—H4A⋯O70.861.932.784 (2)172
O1B—H1B⋯O30.821.652.4648 (19)175
O4—H4⋯O3ii0.821.922.671 (2)151
O1A—H1A⋯O1iii0.821.622.423 (2)166

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Graph-set analysis of hydrogen-bond patterns: some mathematical concepts.

Authors: 
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6.  5-Amino-1H-1,2,4-triazol-4-ium-3-carboxyl-ate hemihydrate.

Authors:  José A Fernandes; Bing Liu; João P C Tomé; Luís Cunha-Silva; Filipe A Almeida Paz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

7.  5-Amino-3-carb-oxy-1H-1,2,4-triazol-4-ium nitrate monohydrate.

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