Literature DB >> 22589962

(3aR*,6S*,7aR*)-7a-Chloro-6-methyl-2-(4-methyl-phenyl-sulfon-yl)-2,3,3a,6,7,7a-hexa-hydro-3a,6-ep-oxy-1H-isoindole.

Ersin Temel, Aydın Demircan, Gözde Beyazova, Orhan Büyükgüngör.   

Abstract

In the title compound, C(16)H(18)ClNO(3)S, the six-membered ring has a boat conformation. The two five-membered rings with the bridging O atom adopt envelope conformations, whereas the N-containing five-membered ring adopts a twisted conformation. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22589962      PMCID: PMC3344053          DOI: 10.1107/S1600536812009658

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the intra­molecular Diels–Alder reaction with furan (IMDAF) as diene partner, see: Lipshutz (1986 ▶); Heiner et al. (1996 ▶); Prajapati et al. (2000 ▶); Kappe et al. (1997 ▶); Padwa et al. (1997 ▶). For our studies of the intra­molecular free radical reaction of furan with a carbon side chain, see: Demircan & Parsons (1998 ▶, 2002 ▶); Demircan et al. (2006 ▶); Karaarslan et al. (2007 ▶). For our investigation of whether the protective group on nitro­gen influences the cyclo­addition process, see: Koşar et al. (2006 ▶); Arslan et al. (2008 ▶); Temel et al. (2011 ▶); Demircan et al. (2011 ▶). For puckering analysis, see: Cremer & Pople (1975 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H18ClNO3S M = 339.82 Monoclinic, a = 10.0523 (5) Å b = 15.5135 (6) Å c = 11.2729 (6) Å β = 114.800 (4)° V = 1595.84 (13) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 296 K 0.78 × 0.72 × 0.60 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED; Stoe & Cie, 2001 ▶) T min = 0.746, T max = 0.843 18547 measured reflections 3312 independent reflections 2841 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.101 S = 1.05 3312 reflections 201 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.37 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812009658/zq2155sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009658/zq2155Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009658/zq2155Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18ClNO3SF(000) = 712
Mr = 339.82Dx = 1.414 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 18547 reflections
a = 10.0523 (5) Åθ = 2.0–28.0°
b = 15.5135 (6) ŵ = 0.38 mm1
c = 11.2729 (6) ÅT = 296 K
β = 114.800 (4)°Block, colourless
V = 1595.84 (13) Å30.78 × 0.72 × 0.60 mm
Z = 4
Stoe IPDS 2 diffractometer3312 independent reflections
Radiation source: fine-focus sealed tube2841 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 6.67 pixels mm-1θmax = 26.5°, θmin = 2.2°
rotation method scansh = −12→12
Absorption correction: integration (X-RED; Stoe & Cie, 2001)k = −19→19
Tmin = 0.746, Tmax = 0.843l = −14→14
18547 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.051P)2 + 0.5399P] where P = (Fo2 + 2Fc2)/3
3312 reflections(Δ/σ)max = 0.001
201 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C100.4256 (2)0.89806 (12)0.5996 (2)0.0456 (4)
H10A0.44040.95120.56140.055*
H10B0.45440.90650.69230.055*
C110.2649 (2)0.86575 (12)0.52936 (19)0.0454 (4)
C120.2241 (2)0.86741 (15)0.3842 (2)0.0569 (5)
H120.16140.90660.32440.068*
C130.2935 (2)0.80336 (14)0.35758 (19)0.0524 (5)
H130.28930.78760.27650.063*
C160.1574 (3)0.90085 (17)0.5776 (3)0.0670 (6)
H16A0.06240.87640.52760.101*
H16B0.15220.96240.56800.101*
H16C0.18880.88620.66810.101*
O10.61916 (15)0.52146 (9)0.65522 (14)0.0526 (3)
O20.79916 (16)0.62551 (11)0.80370 (14)0.0587 (4)
O30.28849 (13)0.77360 (8)0.55435 (12)0.0413 (3)
C10.77799 (19)0.60653 (11)0.56803 (19)0.0411 (4)
C20.7250 (2)0.55616 (12)0.4569 (2)0.0460 (4)
H20.64280.52170.43750.055*
C30.7952 (2)0.55757 (13)0.3748 (2)0.0520 (5)
H30.75940.52360.29990.062*
C40.9179 (2)0.60826 (14)0.4013 (2)0.0530 (5)
C50.9670 (2)0.65924 (15)0.5121 (3)0.0627 (6)
H51.04810.69450.53080.075*
C60.8985 (2)0.65894 (14)0.5953 (2)0.0562 (5)
H60.93310.69370.66930.067*
C70.9952 (3)0.60749 (19)0.3123 (3)0.0746 (7)
H7A1.05810.55800.33140.112*
H7B1.05260.65900.32570.112*
H7C0.92410.60500.22300.112*
C80.5981 (2)0.76445 (12)0.68794 (18)0.0433 (4)
H8A0.70170.77780.72070.052*
H8B0.56760.77090.75850.052*
C90.50862 (19)0.82243 (11)0.57366 (17)0.0388 (4)
C140.38083 (19)0.76143 (11)0.48755 (16)0.0377 (4)
C150.4437 (2)0.67277 (12)0.5043 (2)0.0465 (4)
H15A0.37260.62990.50250.056*
H15B0.47640.65950.43670.056*
Cl10.61872 (6)0.85248 (4)0.48951 (6)0.06283 (18)
N10.56832 (16)0.67646 (10)0.63391 (15)0.0429 (4)
S10.69313 (5)0.60262 (3)0.67681 (5)0.04233 (14)
U11U22U33U12U13U23
C100.0524 (11)0.0356 (9)0.0507 (11)−0.0016 (8)0.0233 (9)−0.0048 (8)
C110.0477 (10)0.0396 (9)0.0482 (10)0.0060 (8)0.0194 (9)−0.0017 (8)
C120.0608 (13)0.0518 (12)0.0460 (11)0.0136 (10)0.0106 (10)0.0068 (9)
C130.0617 (12)0.0560 (12)0.0343 (9)0.0062 (10)0.0150 (9)−0.0004 (8)
C160.0531 (12)0.0716 (15)0.0790 (16)0.0095 (11)0.0304 (12)−0.0167 (13)
O10.0568 (8)0.0384 (7)0.0644 (9)−0.0005 (6)0.0272 (7)0.0103 (6)
O20.0523 (8)0.0646 (10)0.0461 (8)0.0066 (7)0.0079 (7)0.0030 (7)
O30.0394 (6)0.0404 (7)0.0464 (7)−0.0014 (5)0.0202 (6)0.0000 (5)
C10.0347 (9)0.0351 (9)0.0498 (10)0.0034 (7)0.0141 (8)0.0043 (8)
C20.0425 (9)0.0377 (10)0.0560 (11)−0.0035 (8)0.0191 (9)0.0003 (8)
C30.0515 (11)0.0491 (12)0.0552 (11)0.0028 (9)0.0222 (10)−0.0006 (9)
C40.0419 (10)0.0527 (12)0.0673 (13)0.0126 (9)0.0258 (10)0.0169 (10)
C50.0428 (11)0.0602 (13)0.0863 (17)−0.0092 (10)0.0282 (12)0.0013 (12)
C60.0413 (10)0.0536 (12)0.0699 (14)−0.0096 (9)0.0195 (10)−0.0109 (10)
C70.0634 (14)0.0879 (19)0.0885 (18)0.0160 (13)0.0475 (14)0.0213 (15)
C80.0438 (10)0.0382 (9)0.0429 (9)−0.0027 (7)0.0132 (8)−0.0068 (7)
C90.0436 (9)0.0352 (9)0.0428 (9)−0.0058 (7)0.0233 (8)−0.0024 (7)
C140.0386 (9)0.0379 (9)0.0357 (9)−0.0002 (7)0.0148 (7)−0.0035 (7)
C150.0402 (9)0.0401 (10)0.0494 (11)0.0012 (8)0.0094 (8)−0.0076 (8)
Cl10.0688 (3)0.0623 (3)0.0770 (4)−0.0109 (3)0.0498 (3)0.0005 (3)
N10.0385 (8)0.0383 (8)0.0441 (8)0.0008 (6)0.0097 (7)−0.0032 (6)
S10.0401 (2)0.0385 (2)0.0444 (3)0.00261 (18)0.01385 (19)0.00562 (19)
C10—C91.537 (2)C3—C41.385 (3)
C10—C111.554 (3)C3—H30.9300
C10—H10A0.9700C4—C51.383 (3)
C10—H10B0.9700C4—C71.505 (3)
C11—O31.457 (2)C5—C61.377 (3)
C11—C161.501 (3)C5—H50.9300
C11—C121.511 (3)C6—H60.9300
C12—C131.319 (3)C7—H7A0.9600
C12—H120.9300C7—H7B0.9600
C13—C141.504 (3)C7—H7C0.9600
C13—H130.9300C8—N11.473 (2)
C16—H16A0.9600C8—C91.518 (3)
C16—H16B0.9600C8—H8A0.9700
C16—H16C0.9600C8—H8B0.9700
O1—S11.4302 (14)C9—C141.563 (2)
O2—S11.4245 (15)C9—Cl11.7952 (17)
O3—C141.432 (2)C14—C151.492 (2)
C1—C21.380 (3)C15—N11.473 (2)
C1—C61.382 (3)C15—H15A0.9700
C1—S11.7643 (19)C15—H15B0.9700
C2—C31.380 (3)N1—S11.6159 (16)
C2—H20.9300
C9—C10—C11100.86 (14)C5—C6—H6120.3
C9—C10—H10A111.6C1—C6—H6120.3
C11—C10—H10A111.6C4—C7—H7A109.5
C9—C10—H10B111.6C4—C7—H7B109.5
C11—C10—H10B111.6H7A—C7—H7B109.5
H10A—C10—H10B109.4C4—C7—H7C109.5
O3—C11—C16111.69 (17)H7A—C7—H7C109.5
O3—C11—C12100.03 (15)H7B—C7—H7C109.5
C16—C11—C12118.48 (19)N1—C8—C9104.64 (14)
O3—C11—C1099.65 (14)N1—C8—H8A110.8
C16—C11—C10116.82 (17)C9—C8—H8A110.8
C12—C11—C10107.31 (17)N1—C8—H8B110.8
C13—C12—C11107.74 (18)C9—C8—H8B110.8
C13—C12—H12126.1H8A—C8—H8B108.9
C11—C12—H12126.1C8—C9—C10117.81 (15)
C12—C13—C14104.62 (17)C8—C9—C14102.03 (13)
C12—C13—H13127.7C10—C9—C14102.13 (14)
C14—C13—H13127.7C8—C9—Cl1108.97 (13)
C11—C16—H16A109.5C10—C9—Cl1113.96 (13)
C11—C16—H16B109.5C14—C9—Cl1110.94 (12)
H16A—C16—H16B109.5O3—C14—C15112.85 (15)
C11—C16—H16C109.5O3—C14—C13102.29 (14)
H16A—C16—H16C109.5C15—C14—C13124.43 (16)
H16B—C16—H16C109.5O3—C14—C997.98 (12)
C14—O3—C1196.70 (13)C15—C14—C9106.57 (14)
C2—C1—C6120.26 (19)C13—C14—C9109.59 (15)
C2—C1—S1119.75 (14)N1—C15—C14103.22 (14)
C6—C1—S1119.98 (16)N1—C15—H15A111.1
C3—C2—C1119.22 (18)C14—C15—H15A111.1
C3—C2—H2120.4N1—C15—H15B111.1
C1—C2—H2120.4C14—C15—H15B111.1
C2—C3—C4121.6 (2)H15A—C15—H15B109.1
C2—C3—H3119.2C15—N1—C8112.74 (14)
C4—C3—H3119.2C15—N1—S1119.98 (12)
C5—C4—C3117.9 (2)C8—N1—S1122.37 (12)
C5—C4—C7121.2 (2)O2—S1—O1120.46 (9)
C3—C4—C7120.9 (2)O2—S1—N1106.49 (9)
C6—C5—C4121.5 (2)O1—S1—N1106.87 (8)
C6—C5—H5119.3O2—S1—C1108.24 (9)
C4—C5—H5119.3O1—S1—C1106.29 (9)
C5—C6—C1119.5 (2)N1—S1—C1107.98 (8)
C9—C10—C11—O334.16 (17)C12—C13—C14—C15162.03 (19)
C9—C10—C11—C16154.56 (19)C12—C13—C14—C9−70.3 (2)
C9—C10—C11—C12−69.61 (18)C8—C9—C14—O383.30 (14)
O3—C11—C12—C13−30.6 (2)C10—C9—C14—O3−38.96 (16)
C16—C11—C12—C13−152.2 (2)Cl1—C9—C14—O3−160.76 (11)
C10—C11—C12—C1372.9 (2)C8—C9—C14—C15−33.50 (18)
C11—C12—C13—C14−0.8 (2)C10—C9—C14—C15−155.76 (15)
C16—C11—O3—C14174.89 (17)Cl1—C9—C14—C1582.44 (16)
C12—C11—O3—C1448.62 (16)C8—C9—C14—C13−170.56 (15)
C10—C11—O3—C14−61.04 (15)C10—C9—C14—C1367.19 (17)
C6—C1—C2—C31.2 (3)Cl1—C9—C14—C13−54.62 (17)
S1—C1—C2—C3−177.82 (15)O3—C14—C15—N1−80.61 (17)
C1—C2—C3—C40.0 (3)C13—C14—C15—N1154.70 (18)
C2—C3—C4—C5−1.2 (3)C9—C14—C15—N125.80 (18)
C2—C3—C4—C7178.6 (2)C14—C15—N1—C8−8.4 (2)
C3—C4—C5—C61.1 (3)C14—C15—N1—S1−164.23 (13)
C7—C4—C5—C6−178.7 (2)C9—C8—N1—C15−12.7 (2)
C4—C5—C6—C10.1 (3)C9—C8—N1—S1142.44 (13)
C2—C1—C6—C5−1.3 (3)C15—N1—S1—O2178.27 (15)
S1—C1—C6—C5177.75 (17)C8—N1—S1—O224.88 (17)
N1—C8—C9—C10137.96 (16)C15—N1—S1—O1−51.77 (16)
N1—C8—C9—C1427.15 (17)C8—N1—S1—O1154.84 (15)
N1—C8—C9—Cl1−90.22 (14)C15—N1—S1—C162.21 (16)
C11—C10—C9—C8−108.28 (17)C8—N1—S1—C1−91.18 (16)
C11—C10—C9—C142.47 (17)C2—C1—S1—O2153.66 (15)
C11—C10—C9—Cl1122.17 (14)C6—C1—S1—O2−25.36 (19)
C11—O3—C14—C15173.57 (15)C2—C1—S1—O122.93 (17)
C11—O3—C14—C13−50.39 (16)C6—C1—S1—O1−156.09 (16)
C11—O3—C14—C961.76 (14)C2—C1—S1—N1−91.44 (16)
C12—C13—C14—O332.9 (2)C6—C1—S1—N189.54 (17)
D—H···AD—HH···AD···AD—H···A
C2—H2···O1i0.932.483.368 (2)159
C5—H5···O3ii0.932.623.539 (2)169
C13—H13···O3iii0.932.673.601 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O1i0.932.483.368 (2)159
C5—H5⋯O3ii0.932.623.539 (2)169
C13—H13⋯O3iii0.932.673.601 (2)174

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Vibrational spectroscopy investigation using ab initio and density functional theory analysis on the structure of 5-chloro-10-oxa-3-thia-tricyclo[5.2.1.0(1,5)]dec-8-ene-3,3-dioxide.

Authors:  Hakan Arslan; Aydin Demircan; Ersen Göktürk
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2007-03-18       Impact factor: 4.098

3.  (3aR,4S,7R,7aS)-2-Phenyl-4-propyl-3a,4,7,7a-tetra-hydro-1H-4,7-epithio-iso-indole-1,3-dione 8-oxide.

Authors:  Aydın Demircan; Ertan Sahin; Gözde Beyazova; Muhsin Karaaslan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

4.  (3aR,6S,7aR)-7a-Bromo-2-methyl-sulfonyl-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-isoindole.

Authors:  Ersin Temel; Aydın Demircan; Hakan Arslan; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07
  4 in total
  5 in total

1.  Crystal structure and Hirshfeld surface analysis of 4,5-di-bromo-6-methyl-2-phenyl-2,3,3a,4,5,6,7,7a-octa-hydro-3a,6-ep-oxy-1H-isoindol-1-one.

Authors:  Dmitriy F Mertsalov; Maryana A Nadirova; Lala V Chervyakova; Mikhail S Grigoriev; Evgeniya R Shelukho; Sevim Türktekin Çelikesir; Mehmet Akkurt; Sixberth Mlowe
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-09

2.  Crystal structure and Hirshfeld surface analysis of (RS)-3-hy-droxy-2-{[(3aRS,6RS,7aRS)-2-(4-methyl-phenyl-sulfon-yl)-2,3,3a,6,7,7a-hexa-hydro-3a,6-ep-oxy-1H-isoindol-6-yl]meth-yl}isoindolin-1-one.

Authors:  Dmitriy F Mertsalov; Maryana A Nadirova; Elena A Sorokina; Marina A Vinokurova; Sevim Türktekin Çelikesir; Mehmet Akkurt; Irina A Kolesnik; Ajaya Bhattarai
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-16

3.  Crystal structure and Hirshfeld surface analysis of 2-benzyl-4,5-di-bromo-2,3,3a,4,5,6,7,7a-octa-hydro-3a,6-ep-oxy-1H-isoindol-1-one.

Authors:  Dmitriy F Mertsalov; Vladimir P Zaytsev; Kuzma M Pokazeev; Mikhail S Grigoriev; Alexander V Bachinsky; Sevim Türktekin Çelikesir; Mehmet Akkurt; Sixberth Mlowe
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-12

4.  (3aR,6S,7aR)-7a-Chloro-6-methyl-2-(4-nitro-phenyl-sulfon-yl)-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-iso-indole.

Authors:  Aydın Demircan; Ersin Temel; Muhammet Kasım Kandemir; Medine Colak; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-09

5.  (3aR,6S,7aR)-7a-Chloro-2-[(4-nitro-phen-yl)sulfon-yl]-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-iso-indole.

Authors:  Ersin Temel; Aydın Demircan; Muhammet Kasım Kandemir; Medine Colak; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-18
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