Literature DB >> 21754707

(3aR,6S,7aR)-7a-Bromo-2-methyl-sulfonyl-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-isoindole.

Ersin Temel, Aydın Demircan, Hakan Arslan, Orhan Büyükgüngör.   

Abstract

In the title compound, C(9)H(12)BrNO(3)S, the two tetra-hydro-furan rings adopt envelope conformations, the pyrrolidine ring adopts a half-chair conformation and the six-membered ring is in a boat conformation. In the crystal, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into R(2) (2)(8) and R(2) (2)(14) rings along the b-axis direction.

Entities:  

Year:  2011        PMID: 21754707      PMCID: PMC3120297          DOI: 10.1107/S1600536811015959

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Koşar et al. (2006 ▶). For uses of sulfonamides in medicine, in particular the treatment of bacterial infection, see: Kleemann et al. (1999 ▶); Cremlyn (1996 ▶). For the synthesis of sulfonamides, see: Anderson (1979 ▶). For thermal intra­molecular Diels–Alder reaction of furans (IMDAF), see: Demircan & Parsons (2002 ▶); Arslan et al. (2008 ▶). A mesyl group in the structure is normally chosen as a protective group for nitro­gen, but at the same time accelerates the cyclo­addition process for IMDAF, see: Greene (1981 ▶); Choony et al. (1997 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C9H12BrNO3S M = 294.17 Triclinic, a = 5.9478 (7) Å b = 9.5869 (10) Å c = 10.7775 (11) Å α = 114.307 (8)° β = 90.481 (9)° γ = 97.812 (9)° V = 553.46 (10) Å3 Z = 2 Mo Kα radiation μ = 3.89 mm−1 T = 296 K 0.38 × 0.23 × 0.08 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2001 ▶) T min = 0.223, T max = 0.682 8163 measured reflections 2293 independent reflections 1920 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.107 S = 1.10 2293 reflections 137 parameters H-atom parameters constrained Δρmax = 0.86 e Å−3 Δρmin = −0.44 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶), OLEX2, publCIF (Westrip, 2010 ▶) and Mercury (Macrae et al., 2006 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015959/hg5029sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015959/hg5029Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811015959/hg5029Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H12BrNO3SZ = 2
Mr = 294.17F(000) = 296
Triclinic, P1Dx = 1.765 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.9478 (7) ÅCell parameters from 8163 reflections
b = 9.5869 (10) Åθ = 2.1–27.5°
c = 10.7775 (11) ŵ = 3.89 mm1
α = 114.307 (8)°T = 296 K
β = 90.481 (9)°Block, light-brown
γ = 97.812 (9)°0.38 × 0.23 × 0.08 mm
V = 553.46 (10) Å3
Stoe IPDS 2 diffractometer2293 independent reflections
Radiation source: fine-focus sealed tube1920 reflections with I > 2σ(I)
graphiteRint = 0.082
Detector resolution: 6.67 pixels mm-1θmax = 26.5°, θmin = 2.1°
rotation method scansh = −7→7
Absorption correction: integration (X-RED; Stoe & Cie, 2001)k = −12→12
Tmin = 0.223, Tmax = 0.682l = −13→13
8163 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0452P)2 + 0.3277P] where P = (Fo2 + 2Fc2)/3
2293 reflections(Δ/σ)max < 0.001
137 parametersΔρmax = 0.86 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7380 (6)0.3068 (4)0.6385 (4)0.0348 (8)
C20.8248 (7)0.1507 (5)0.5964 (4)0.0438 (9)
H2A0.97700.15430.56510.053*
H2B0.72340.06680.52640.053*
C30.8218 (9)0.1363 (5)0.7338 (5)0.0553 (11)
H30.91890.06540.74210.066*
C40.5780 (9)0.1066 (6)0.7645 (5)0.0577 (12)
H40.49950.01320.75880.069*
C50.4970 (8)0.2380 (6)0.8007 (4)0.0502 (10)
H50.35160.25690.82680.060*
C60.6907 (6)0.3509 (4)0.7910 (4)0.0369 (8)
C70.7123 (7)0.5249 (5)0.8604 (4)0.0441 (9)
H7A0.56450.55780.88010.053*
H7B0.80830.56630.94460.053*
C80.9051 (7)0.4468 (4)0.6497 (4)0.0429 (9)
H8A1.05850.43880.67440.051*
H8B0.90390.45900.56470.051*
O20.7873 (6)0.8440 (4)0.8963 (4)0.0738 (11)
Br10.46555 (8)0.29243 (5)0.52887 (5)0.05052 (17)
N10.8186 (6)0.5743 (4)0.7581 (3)0.0443 (8)
O10.8850 (5)0.2972 (3)0.8292 (3)0.0484 (7)
C91.2003 (8)0.7824 (6)0.8803 (5)0.0592 (12)
H9A1.26430.88990.91360.089*
H9B1.29670.72080.81580.089*
H9C1.18810.75290.95520.089*
O30.9632 (6)0.7717 (4)0.6764 (4)0.0633 (9)
S10.92989 (17)0.75291 (11)0.80041 (11)0.0423 (2)
U11U22U33U12U13U23
C10.0378 (18)0.034 (2)0.0349 (19)0.0078 (15)0.0081 (15)0.0151 (15)
C20.044 (2)0.030 (2)0.053 (2)0.0081 (16)0.0068 (18)0.0124 (17)
C30.075 (3)0.036 (2)0.059 (3)0.012 (2)−0.007 (2)0.022 (2)
C40.083 (3)0.044 (3)0.047 (2)−0.008 (2)0.002 (2)0.024 (2)
C50.055 (2)0.055 (3)0.039 (2)−0.003 (2)0.0134 (19)0.021 (2)
C60.0406 (19)0.038 (2)0.0328 (19)0.0069 (15)0.0043 (15)0.0146 (16)
C70.052 (2)0.036 (2)0.041 (2)0.0093 (17)0.0121 (17)0.0124 (17)
C80.052 (2)0.031 (2)0.043 (2)0.0058 (17)0.0165 (18)0.0135 (17)
O20.066 (2)0.0383 (19)0.098 (3)0.0125 (16)0.012 (2)0.0082 (18)
Br10.0549 (3)0.0520 (3)0.0448 (2)0.01178 (18)−0.00663 (17)0.01939 (19)
N10.057 (2)0.0296 (18)0.0427 (19)0.0044 (14)0.0115 (15)0.0122 (14)
O10.0595 (18)0.0385 (16)0.0455 (16)0.0081 (13)−0.0092 (13)0.0159 (13)
C90.051 (2)0.067 (3)0.058 (3)0.002 (2)−0.011 (2)0.027 (3)
O30.082 (2)0.053 (2)0.067 (2)−0.0026 (16)−0.0173 (18)0.0413 (18)
S10.0465 (6)0.0280 (5)0.0509 (6)0.0065 (4)−0.0034 (4)0.0148 (4)
C1—C81.519 (5)C6—C71.507 (6)
C1—C21.538 (5)C7—N11.482 (5)
C1—C61.558 (5)C7—H7A0.9700
C1—Br11.953 (4)C7—H7B0.9700
C2—C31.542 (6)C8—N11.460 (5)
C2—H2A0.9700C8—H8A0.9700
C2—H2B0.9700C8—H8B0.9700
C3—O11.452 (5)O2—S11.422 (4)
C3—C41.505 (7)N1—S11.619 (3)
C3—H30.9800C9—S11.749 (5)
C4—C51.317 (7)C9—H9A0.9600
C4—H40.9300C9—H9B0.9600
C5—C61.506 (6)C9—H9C0.9600
C5—H50.9300O3—S11.432 (3)
C6—O11.448 (5)
C8—C1—C2118.5 (3)C7—C6—C1107.2 (3)
C8—C1—C6101.3 (3)N1—C7—C6103.0 (3)
C2—C1—C6102.7 (3)N1—C7—H7A111.2
C8—C1—Br1108.7 (3)C6—C7—H7A111.2
C2—C1—Br1112.9 (3)N1—C7—H7B111.2
C6—C1—Br1112.0 (2)C6—C7—H7B111.2
C1—C2—C3100.0 (3)H7A—C7—H7B109.1
C1—C2—H2A111.8N1—C8—C1102.6 (3)
C3—C2—H2A111.8N1—C8—H8A111.2
C1—C2—H2B111.8C1—C8—H8A111.2
C3—C2—H2B111.8N1—C8—H8B111.2
H2A—C2—H2B109.5C1—C8—H8B111.2
O1—C3—C4100.7 (4)H8A—C8—H8B109.2
O1—C3—C2101.0 (3)C8—N1—C7111.4 (3)
C4—C3—C2108.5 (4)C8—N1—S1121.6 (3)
O1—C3—H3115.0C7—N1—S1120.8 (3)
C4—C3—H3115.0C6—O1—C395.6 (3)
C2—C3—H3115.0S1—C9—H9A109.5
C5—C4—C3107.0 (4)S1—C9—H9B109.5
C5—C4—H4126.5H9A—C9—H9B109.5
C3—C4—H4126.5S1—C9—H9C109.5
C4—C5—C6105.1 (4)H9A—C9—H9C109.5
C4—C5—H5127.4H9B—C9—H9C109.5
C6—C5—H5127.4O2—S1—O3119.5 (2)
O1—C6—C5101.4 (3)O2—S1—N1105.8 (2)
O1—C6—C7111.1 (3)O3—S1—N1107.14 (19)
C5—C6—C7125.8 (4)O2—S1—C9109.3 (3)
O1—C6—C197.9 (3)O3—S1—C9106.7 (2)
C5—C6—C1109.8 (3)N1—S1—C9107.9 (2)
C8—C1—C2—C3108.2 (4)C5—C6—C7—N1−143.5 (4)
C6—C1—C2—C3−2.3 (4)C1—C6—C7—N1−12.1 (4)
Br1—C1—C2—C3−123.1 (3)C2—C1—C8—N1−148.4 (4)
C1—C2—C3—O1−35.0 (4)C6—C1—C8—N1−37.1 (4)
C1—C2—C3—C470.3 (4)Br1—C1—C8—N180.9 (3)
O1—C3—C4—C531.9 (5)C1—C8—N1—C732.5 (4)
C2—C3—C4—C5−73.6 (5)C1—C8—N1—S1−175.0 (3)
C3—C4—C5—C60.7 (5)C6—C7—N1—C8−12.6 (5)
C4—C5—C6—O1−33.4 (4)C6—C7—N1—S1−165.3 (3)
C4—C5—C6—C7−160.2 (4)C5—C6—O1—C351.1 (4)
C4—C5—C6—C169.4 (4)C7—C6—O1—C3−173.0 (3)
C8—C1—C6—O1−84.1 (3)C1—C6—O1—C3−61.0 (3)
C2—C1—C6—O138.8 (3)C4—C3—O1—C6−50.1 (4)
Br1—C1—C6—O1160.2 (2)C2—C3—O1—C661.4 (4)
C8—C1—C6—C5170.7 (3)C8—N1—S1—O2173.3 (4)
C2—C1—C6—C5−66.4 (4)C7—N1—S1—O2−36.8 (4)
Br1—C1—C6—C555.0 (4)C8—N1—S1—O344.7 (4)
C8—C1—C6—C731.0 (4)C7—N1—S1—O3−165.3 (3)
C2—C1—C6—C7153.9 (3)C8—N1—S1—C9−69.8 (4)
Br1—C1—C6—C7−84.7 (3)C7—N1—S1—C980.1 (4)
O1—C6—C7—N193.8 (4)
D—H···AD—HH···AD···AD—H···A
C9—H9A···O2i0.962.593.385 (7)140
C9—H9C···O1ii0.962.593.540 (6)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9A⋯O2i0.962.593.385 (7)140
C9—H9C⋯O1ii0.962.593.540 (6)172

Symmetry codes: (i) ; (ii) .

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