Literature DB >> 21754407

(3aR,4S,7R,7aS)-2-Phenyl-4-propyl-3a,4,7,7a-tetra-hydro-1H-4,7-epithio-iso-indole-1,3-dione 8-oxide.

Aydın Demircan, Ertan Sahin, Gözde Beyazova, Muhsin Karaaslan, Tuncer Hökelek.   

Abstract

In the tetra-hydro-isoindole moiety of the title compound, C(17)H(17)NO(3)S, the six-membered ring assumes a boat configuration and the -S=O group bridges the prow and stern of the boat. The phenyl ring is oriented at a dihedral angle of 83.2 (1)° with respect to the pyrrole ring. In the crystal, inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network. A weak C-H⋯π inter-action involving the phenyl ring is also found. The crystal studied was an inversion twin.

Entities:  

Year:  2011        PMID: 21754407      PMCID: PMC3089067          DOI: 10.1107/S1600536811012876

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the thio­phenen system, see: Lert & Trindle (1971 ▶). For the conditions of cyclo­addition reactions of thio­phene, see: Al-Omran et al. (1996 ▶); Kuhn & Gollnick (1972 ▶); Kotsuki et al. (1978 ▶); Thiemann et al. (1995 ▶). For the biological activity of some thio­phene 1,1-dioxide derivatives, see: Thiemann et al. (2009 ▶). For thio­phene s-oxides with alkyl groups at positions 2,3,4 and 5, see: Rajappa (1984 ▶). For related structures, see: Arslan & Demircan (2007 ▶); Koşar et al. (2006 ▶).

Experimental

Crystal data

C17H17NO3S M = 315.39 Orthorhombic, a = 7.7712 (3) Å b = 10.8413 (3) Å c = 18.9762 (4) Å V = 1598.74 (8) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 294 K 0.30 × 0.25 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.807, T max = 0.865 34450 measured reflections 3279 independent reflections 2686 reflections with I > 2σ(I) R int = 0.088

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.108 S = 1.08 3279 reflections 210 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1379 Friedel pairs Flack parameter: 0.37 (9) Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012876/xu5179sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012876/xu5179Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H17NO3SF(000) = 664
Mr = 315.39Dx = 1.310 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6907 reflections
a = 7.7712 (3) Åθ = 2.2–26.4°
b = 10.8413 (3) ŵ = 0.21 mm1
c = 18.9762 (4) ÅT = 294 K
V = 1598.74 (8) Å3Block, colorless
Z = 40.30 × 0.25 × 0.20 mm
Rigaku R-AXIS RAPID-S diffractometer3279 independent reflections
Radiation source: fine-focus sealed tube2686 reflections with I > 2σ(I)
graphiteRint = 0.088
ω scansθmax = 26.4°, θmin = 2.2°
Absorption correction: multi-scan (Blessing, 1995)h = −9→9
Tmin = 0.807, Tmax = 0.865k = −13→13
34450 measured reflectionsl = −23→23
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.047w = 1/[σ2(Fo2) + (0.0453P)2 + 0.1086P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.108(Δ/σ)max < 0.001
S = 1.08Δρmax = 0.20 e Å3
3279 reflectionsΔρmin = −0.22 e Å3
210 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.018 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1379 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.37 (9)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.0424 (3)0.0571 (2)0.16742 (11)0.0742 (6)
O20.3289 (2)0.35385 (18)0.09320 (10)0.0708 (6)
O3−0.3050 (2)0.40176 (16)0.00144 (9)0.0633 (5)
C10.0032 (3)0.1488 (3)0.13751 (14)0.0553 (6)
N20.1690 (3)0.1987 (2)0.14224 (10)0.0528 (5)
C30.1923 (3)0.3011 (2)0.10005 (12)0.0526 (6)
C3A0.0230 (3)0.3335 (2)0.06695 (13)0.0488 (6)
H3A0.03240.33490.01550.059*
C4−0.0495 (3)0.4576 (2)0.09505 (13)0.0541 (6)
C5−0.0650 (4)0.4517 (3)0.17396 (15)0.0654 (8)
H5−0.003 (3)0.503 (2)0.2053 (14)0.060 (8)*
C6−0.1750 (4)0.3652 (3)0.19369 (15)0.0659 (8)
H6−0.216 (4)0.346 (3)0.2393 (16)0.083 (9)*
C7−0.2475 (3)0.2998 (2)0.13186 (13)0.0578 (7)
H7−0.34990.24980.14140.069*
C7A−0.1015 (3)0.2327 (2)0.09100 (12)0.0509 (6)
H7A−0.14790.18750.05050.061*
S8−0.28413 (8)0.43745 (6)0.07643 (3)0.0564 (2)
C90.0304 (4)0.5709 (3)0.06204 (17)0.0716 (8)
H9A0.15370.56750.06980.086*
H9B0.01130.56710.01160.086*
C10−0.0343 (5)0.6940 (3)0.0883 (2)0.1081 (13)
H10A−0.15840.69670.08310.130*
H10B−0.00810.70140.13810.130*
C110.0429 (8)0.8016 (4)0.0500 (3)0.176 (3)
H11A−0.00630.87680.06750.264*
H11B0.01920.79430.00050.264*
H11C0.16500.80260.05740.264*
C120.3072 (3)0.1422 (2)0.18063 (14)0.0580 (7)
C130.3496 (4)0.1844 (3)0.24562 (15)0.0729 (9)
H130.28880.24880.26630.087*
C140.4881 (5)0.1281 (4)0.2808 (2)0.0951 (12)
H140.51970.15540.32550.114*
C150.5753 (5)0.0350 (4)0.2504 (3)0.1005 (14)
H150.6669−0.00100.27430.121*
C160.5321 (5)−0.0070 (4)0.1856 (2)0.0974 (12)
H160.5939−0.07100.16510.117*
C170.3949 (4)0.0460 (3)0.15000 (16)0.0732 (8)
H170.36260.01680.10590.088*
U11U22U33U12U13U23
O10.0578 (11)0.0808 (14)0.0841 (14)−0.0097 (11)−0.0041 (10)0.0270 (12)
O20.0467 (10)0.0775 (13)0.0883 (14)−0.0098 (9)0.0005 (9)0.0129 (11)
O30.0654 (12)0.0712 (12)0.0533 (10)0.0027 (10)−0.0088 (9)−0.0030 (9)
C10.0522 (15)0.0627 (17)0.0509 (14)−0.0031 (12)0.0019 (12)0.0021 (13)
N20.0457 (11)0.0591 (12)0.0537 (12)−0.0010 (9)−0.0012 (9)0.0057 (10)
C30.0486 (15)0.0587 (14)0.0506 (13)0.0003 (13)0.0024 (11)−0.0015 (11)
C3A0.0463 (13)0.0526 (14)0.0476 (13)0.0001 (10)0.0013 (11)0.0006 (11)
C40.0499 (14)0.0552 (15)0.0573 (15)−0.0011 (12)0.0010 (12)−0.0058 (12)
C50.0577 (16)0.081 (2)0.0572 (16)0.0093 (16)−0.0064 (14)−0.0204 (15)
C60.0559 (17)0.090 (2)0.0521 (16)0.0140 (16)0.0059 (13)−0.0032 (15)
C70.0482 (15)0.0675 (16)0.0578 (15)−0.0004 (12)0.0037 (12)0.0069 (13)
C7A0.0458 (13)0.0571 (14)0.0499 (14)−0.0020 (11)−0.0026 (11)0.0012 (11)
S80.0511 (4)0.0604 (4)0.0576 (4)0.0037 (3)−0.0014 (3)−0.0029 (3)
C90.0703 (18)0.0600 (17)0.084 (2)−0.0091 (15)0.0010 (15)−0.0013 (16)
C100.111 (3)0.0577 (19)0.156 (4)−0.0059 (19)0.021 (3)−0.007 (2)
C110.196 (6)0.061 (3)0.272 (7)−0.023 (3)0.070 (5)0.004 (3)
C120.0467 (14)0.0694 (17)0.0579 (15)−0.0037 (13)−0.0035 (12)0.0137 (13)
C130.0675 (18)0.090 (2)0.0611 (17)−0.0115 (17)−0.0119 (14)0.0085 (15)
C140.081 (3)0.129 (3)0.075 (2)−0.035 (2)−0.026 (2)0.033 (2)
C150.062 (2)0.127 (4)0.112 (3)0.000 (2)−0.017 (2)0.057 (3)
C160.076 (2)0.113 (3)0.103 (3)0.025 (2)−0.004 (2)0.027 (2)
C170.0665 (18)0.079 (2)0.0737 (19)0.0133 (17)−0.0027 (15)0.0094 (17)
O1—C11.198 (3)S8—C71.848 (3)
O2—C31.213 (3)C9—C101.511 (4)
C1—C7A1.506 (3)C9—H9A0.9700
N2—C11.401 (3)C9—H9B0.9700
N2—C31.380 (3)C10—C111.500 (6)
N2—C121.435 (3)C10—H10A0.9700
C3A—C31.500 (3)C10—H10B0.9700
C3A—C41.553 (3)C11—H11A0.9600
C3A—C7A1.529 (3)C11—H11B0.9600
C3A—H3A0.9800C11—H11C0.9600
C4—C51.504 (4)C12—C131.356 (4)
C4—C91.511 (4)C12—C171.375 (4)
C5—H50.95 (3)C13—C141.406 (5)
C6—C51.323 (5)C13—H130.9300
C6—H60.95 (3)C14—H140.9300
C7—C61.482 (4)C15—C141.346 (5)
C7—C7A1.555 (3)C15—C161.353 (6)
C7—H70.9800C15—H150.9300
C7A—H7A0.9800C16—H160.9300
S8—O31.4836 (18)C17—C161.387 (4)
S8—C41.871 (3)C17—H170.9300
O1—C1—N2124.2 (2)O3—S8—C4108.56 (11)
O1—C1—C7A128.2 (2)O3—S8—C7110.62 (11)
N2—C1—C7A107.5 (2)C7—S8—C480.60 (11)
C1—N2—C12123.8 (2)C4—C9—H9A108.2
C3—N2—C1113.2 (2)C4—C9—H9B108.2
C3—N2—C12122.7 (2)C10—C9—C4116.4 (3)
O2—C3—N2123.8 (2)C10—C9—H9A108.2
O2—C3—C3A127.8 (2)C10—C9—H9B108.2
N2—C3—C3A108.4 (2)H9A—C9—H9B107.3
C3—C3A—C4112.2 (2)C9—C10—H10A108.9
C3—C3A—C7A105.22 (19)C9—C10—H10B108.9
C3—C3A—H3A110.8C11—C10—C9113.2 (3)
C4—C3A—H3A110.8C11—C10—H10A108.9
C7A—C3A—C4106.71 (19)C11—C10—H10B108.9
C7A—C3A—H3A110.8H10A—C10—H10B107.7
C3A—C4—S8100.79 (16)C10—C11—H11A109.5
C5—C4—S896.01 (18)C10—C11—H11B109.5
C5—C4—C3A109.5 (2)C10—C11—H11C109.5
C5—C4—C9118.7 (2)H11A—C11—H11B109.5
C9—C4—S8114.65 (19)H11A—C11—H11C109.5
C9—C4—C3A114.4 (2)H11B—C11—H11C109.5
C4—C5—H5124.0 (16)C13—C12—N2120.0 (3)
C6—C5—C4111.4 (3)C13—C12—C17121.3 (3)
C6—C5—H5124.7 (15)C17—C12—N2118.7 (2)
C5—C6—C7111.1 (3)C12—C13—C14118.2 (3)
C5—C6—H6129.2 (19)C12—C13—H13120.9
C7—C6—H6119.5 (19)C14—C13—H13120.9
S8—C7—H7115.3C13—C14—H14119.8
C6—C7—S897.05 (19)C15—C14—C13120.4 (4)
C6—C7—C7A110.0 (2)C15—C14—H14119.8
C6—C7—H7115.3C14—C15—C16121.2 (4)
C7A—C7—S8101.92 (16)C14—C15—H15119.4
C7A—C7—H7115.3C16—C15—H15119.4
C1—C7A—C3A105.4 (2)C15—C16—C17119.6 (4)
C1—C7A—C7112.6 (2)C15—C16—H16120.2
C1—C7A—H7A110.9C17—C16—H16120.2
C3A—C7A—C7106.0 (2)C12—C17—C16119.3 (3)
C3A—C7A—H7A110.9C12—C17—H17120.3
C7—C7A—H7A110.9C16—C17—H17120.3
O1—C1—C7A—C3A−179.5 (3)C3A—C4—C5—C6−62.6 (3)
O1—C1—C7A—C765.4 (4)C9—C4—C5—C6163.5 (3)
N2—C1—C7A—C3A2.2 (3)S8—C4—C9—C1065.0 (3)
N2—C1—C7A—C7−112.9 (2)C3A—C4—C9—C10−179.3 (3)
C3—N2—C1—O1176.9 (3)C5—C4—C9—C10−47.5 (4)
C3—N2—C1—C7A−4.8 (3)C7—C6—C5—C40.7 (3)
C12—N2—C1—O13.5 (4)S8—C7—C6—C5−42.9 (3)
C12—N2—C1—C7A−178.1 (2)C7A—C7—C6—C562.5 (3)
C1—N2—C3—O2−175.5 (2)S8—C7—C7A—C1156.02 (18)
C1—N2—C3—C3A5.3 (3)S8—C7—C7A—C3A41.3 (2)
C12—N2—C3—O2−2.1 (4)C6—C7—C7A—C153.9 (3)
C12—N2—C3—C3A178.8 (2)C6—C7—C7A—C3A−60.8 (3)
C1—N2—C12—C13−100.8 (3)O3—S8—C4—C3A−51.85 (18)
C1—N2—C12—C1779.6 (3)O3—S8—C4—C5−163.06 (17)
C3—N2—C12—C1386.5 (3)O3—S8—C4—C971.5 (2)
C3—N2—C12—C17−93.1 (3)C7—S8—C4—C3A56.87 (16)
C4—C3A—C3—O2−67.0 (3)C7—S8—C4—C5−54.33 (18)
C4—C3A—C3—N2112.1 (2)C7—S8—C4—C9−179.8 (2)
C7A—C3A—C3—O2177.3 (2)O3—S8—C7—C6161.81 (16)
C7A—C3A—C3—N2−3.5 (3)C4—S8—C7—C655.41 (17)
C3—C3A—C4—S8−156.84 (17)O3—S8—C7—C7A49.62 (19)
C3—C3A—C4—C5−56.4 (3)C4—S8—C7—C7A−56.78 (16)
C3—C3A—C4—C979.6 (3)C4—C9—C10—C11−176.4 (4)
C7A—C3A—C4—S8−42.1 (2)N2—C12—C13—C14−178.7 (3)
C7A—C3A—C4—C558.3 (3)C17—C12—C13—C140.9 (4)
C7A—C3A—C4—C9−165.7 (2)N2—C12—C17—C16178.1 (3)
C3—C3A—C7A—C10.7 (3)C13—C12—C17—C16−1.5 (4)
C3—C3A—C7A—C7120.3 (2)C12—C13—C14—C150.0 (5)
C4—C3A—C7A—C1−118.6 (2)C16—C15—C14—C13−0.2 (6)
C4—C3A—C7A—C71.0 (3)C14—C15—C16—C17−0.4 (6)
S8—C4—C5—C641.1 (3)C12—C17—C16—C151.3 (5)
Cg1 is the centroid of the C12–C17 phenyl ring.
D—H···AD—HH···AD···AD—H···A
C5—H5···O1i0.95 (2)2.51 (3)3.326 (4)144 (2)
C17—H17···O3ii0.932.573.315 (3)137
C7—H7···Cg1iii0.982.773.693 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C12–C17 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O1i0.95 (2)2.51 (3)3.326 (4)144 (2)
C17—H17⋯O3ii0.932.573.315 (3)137
C7—H7⋯Cg1iii0.982.773.693 (3)157

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

4.  Brominated thiophenes as precursors in the preparation of brominated and arylated anthraquinones.

Authors:  Thies Thiemann; Yasuko Tanaka; Jesus Iniesta
Journal:  Molecules       Date:  2009-03-04       Impact factor: 4.411

  4 in total
  2 in total

1.  (3aR,6S,7aR)-7a-Chloro-6-methyl-2-(4-nitro-phenyl-sulfon-yl)-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-iso-indole.

Authors:  Aydın Demircan; Ersin Temel; Muhammet Kasım Kandemir; Medine Colak; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-09

2.  (3aR*,6S*,7aR*)-7a-Chloro-6-methyl-2-(4-methyl-phenyl-sulfon-yl)-2,3,3a,6,7,7a-hexa-hydro-3a,6-ep-oxy-1H-isoindole.

Authors:  Ersin Temel; Aydın Demircan; Gözde Beyazova; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17
  2 in total

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