Literature DB >> 24098235

(3aR,6S,7aR)-7a-Chloro-2-[(4-nitro-phen-yl)sulfon-yl]-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-iso-indole.

Ersin Temel1, Aydın Demircan, Muhammet Kasım Kandemir, Medine Colak, Orhan Büyükgüngör.   

Abstract

In the title compound, C14H13ClN2O5S, the chlorine-substituted tetrahydrofuran ring adopts a twist conformation and the other tetra-hydro-furan ring an envelope conformation with the O atom as the flap. The pyrrolidine ring adopts a twist conformation. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules into zigzag chains running along the b-axis direction.

Entities:  

Year:  2013        PMID: 24098235      PMCID: PMC3790416          DOI: 10.1107/S1600536813025336

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Diels–Alder reactions, see: Winkler (1996 ▶); Paulvannan (2004 ▶); Norton (1942 ▶); Fraile et al. (2001 ▶); Padwa et al. (2003 ▶); Medimagh et al. (2008 ▶); Avalos et al. (2003 ▶). For the thermal IMDA reaction of furan-cored compounds, see: Karaarslan & Demircan (2006 ▶); Koşar et al. (2006 ▶, 2007 ▶, 2011 ▶); Arslan et al. (2008 ▶); Temel et al. (2012 ▶). For graph-set notation of hydrogen bonds, see: Bernstein et al. (1995 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C14H13ClN2O5S M = 356.77 Monoclinic, a = 7.5193 (3) Å b = 9.7278 (4) Å c = 20.7616 (7) Å β = 93.659 (3)° V = 1515.54 (10) Å3 Z = 4 Mo Kα radiation μ = 0.42 mm−1 T = 296 K 0.68 × 0.63 × 0.60 mm

Data collection

STOE IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.811, T max = 0.850 11192 measured reflections 3151 independent reflections 2494 reflections with I > 2σ(I) R int = 0.242

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.110 S = 1.03 3151 reflections 208 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.23 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813025336/bt6932sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025336/bt6932Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813025336/bt6932Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H13ClN2O5SF(000) = 736
Mr = 356.77Dx = 1.564 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 11192 reflections
a = 7.5193 (3) Åθ = 2.0–28.0°
b = 9.7278 (4) ŵ = 0.42 mm1
c = 20.7616 (7) ÅT = 296 K
β = 93.659 (3)°Prism, colorless
V = 1515.54 (10) Å30.68 × 0.63 × 0.60 mm
Z = 4
STOE IPDS 2 diffractometer3151 independent reflections
Radiation source: fine-focus sealed tube2494 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.242
rotation method scansθmax = 26.5°, θmin = 2.0°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)h = −9→9
Tmin = 0.811, Tmax = 0.850k = −12→12
11192 measured reflectionsl = −26→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0708P)2 + 0.085P] where P = (Fo2 + 2Fc2)/3
3151 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1690 (2)0.43022 (19)0.57226 (9)0.0532 (4)
C20.2809 (3)0.5425 (2)0.57988 (11)0.0647 (5)
H20.38070.54920.55580.078*
C30.2448 (3)0.6445 (2)0.62308 (11)0.0638 (5)
H30.31680.72200.62770.077*
C40.0984 (2)0.62852 (18)0.65935 (9)0.0530 (4)
C5−0.0099 (3)0.5154 (2)0.65435 (10)0.0627 (5)
H5−0.10460.50610.68070.075*
C60.0234 (3)0.4159 (2)0.60974 (11)0.0619 (5)
H6−0.05070.33960.60470.074*
C70.2824 (2)0.1007 (2)0.60045 (9)0.0551 (4)
H7A0.20720.02700.58290.066*
H7B0.21760.15260.63120.066*
C80.4526 (2)0.04597 (17)0.63097 (8)0.0462 (4)
C90.4822 (3)0.0021 (2)0.70034 (10)0.0629 (5)
H90.41320.02460.73440.075*
C100.6266 (3)−0.0750 (2)0.70250 (11)0.0708 (6)
H100.6812−0.11730.73870.085*
C110.6856 (3)−0.0808 (2)0.63474 (10)0.0631 (5)
H110.7582−0.16090.62510.076*
C120.7690 (2)0.0595 (2)0.61967 (10)0.0578 (5)
H12A0.85370.08910.65410.069*
H12B0.82690.05760.57920.069*
C130.6017 (2)0.15046 (18)0.61523 (8)0.0470 (4)
C140.5380 (2)0.2031 (2)0.54972 (9)0.0566 (5)
H14A0.57330.29800.54420.068*
H14B0.58560.14800.51590.068*
N10.0537 (2)0.73809 (18)0.70409 (9)0.0641 (4)
N20.3418 (2)0.19055 (17)0.54859 (7)0.0551 (4)
O10.1109 (2)0.85355 (16)0.69498 (9)0.0860 (5)
O2−0.0412 (3)0.70905 (18)0.74790 (9)0.0837 (5)
O30.0442 (2)0.23390 (18)0.49970 (8)0.0769 (4)
O40.3033 (2)0.36571 (18)0.46492 (7)0.0810 (5)
O50.51741 (17)−0.07105 (13)0.59750 (7)0.0592 (3)
S10.20917 (7)0.30168 (5)0.51441 (2)0.06001 (17)
Cl10.60735 (7)0.28908 (5)0.67199 (3)0.06988 (18)
U11U22U33U12U13U23
C10.0534 (10)0.0544 (10)0.0520 (9)0.0054 (8)0.0040 (8)0.0121 (8)
C20.0608 (11)0.0608 (11)0.0743 (13)−0.0031 (9)0.0195 (10)0.0156 (10)
C30.0578 (11)0.0519 (10)0.0817 (13)−0.0070 (9)0.0052 (10)0.0105 (10)
C40.0515 (10)0.0492 (9)0.0571 (10)0.0048 (8)−0.0047 (8)0.0084 (8)
C50.0535 (10)0.0635 (11)0.0726 (12)−0.0029 (9)0.0158 (9)0.0020 (10)
C60.0525 (10)0.0574 (10)0.0769 (13)−0.0088 (9)0.0119 (9)−0.0017 (9)
C70.0448 (9)0.0584 (10)0.0620 (11)−0.0040 (8)0.0040 (8)0.0106 (8)
C80.0424 (8)0.0477 (8)0.0487 (9)−0.0034 (7)0.0035 (7)0.0019 (7)
C90.0616 (12)0.0735 (12)0.0541 (10)−0.0033 (10)0.0082 (9)0.0153 (9)
C100.0661 (13)0.0782 (14)0.0667 (12)0.0053 (11)−0.0059 (10)0.0215 (11)
C110.0549 (11)0.0626 (11)0.0704 (12)0.0109 (9)−0.0069 (9)−0.0058 (9)
C120.0417 (9)0.0758 (12)0.0559 (10)0.0016 (9)0.0027 (7)−0.0089 (9)
C130.0434 (9)0.0529 (9)0.0452 (8)−0.0062 (7)0.0068 (7)−0.0058 (7)
C140.0493 (10)0.0691 (11)0.0523 (10)−0.0022 (9)0.0104 (8)0.0087 (8)
N10.0616 (10)0.0597 (10)0.0688 (11)0.0112 (8)−0.0126 (8)−0.0010 (8)
N20.0484 (8)0.0640 (9)0.0531 (8)0.0057 (7)0.0055 (7)0.0119 (7)
O10.0916 (12)0.0555 (9)0.1090 (13)0.0002 (8)−0.0077 (10)−0.0062 (9)
O20.0914 (12)0.0848 (11)0.0759 (10)0.0132 (9)0.0141 (9)−0.0065 (8)
O30.0687 (10)0.0855 (10)0.0735 (9)0.0134 (8)−0.0203 (7)−0.0094 (8)
O40.1031 (13)0.0910 (11)0.0507 (8)0.0235 (10)0.0181 (8)0.0212 (8)
O50.0568 (8)0.0521 (7)0.0672 (8)0.0010 (6)−0.0074 (6)−0.0104 (6)
S10.0645 (3)0.0674 (3)0.0475 (3)0.0122 (2)−0.0015 (2)0.0068 (2)
Cl10.0700 (3)0.0652 (3)0.0748 (3)−0.0109 (2)0.0081 (3)−0.0243 (2)
C1—C21.382 (3)C9—H90.9300
C1—C61.390 (3)C10—C111.503 (3)
C1—S11.773 (2)C10—H100.9300
C2—C31.376 (3)C11—O51.443 (2)
C2—H20.9300C11—C121.542 (3)
C3—C41.381 (3)C11—H110.9800
C3—H30.9300C12—C131.536 (3)
C4—C51.369 (3)C12—H12A0.9700
C4—N11.467 (3)C12—H12B0.9700
C5—C61.374 (3)C13—C141.503 (3)
C5—H50.9300C13—Cl11.7896 (17)
C6—H60.9300C14—N21.479 (2)
C7—N21.478 (2)C14—H14A0.9700
C7—C81.490 (3)C14—H14B0.9700
C7—H7A0.9700N1—O11.222 (2)
C7—H7B0.9700N1—O21.225 (2)
C8—O51.435 (2)N2—S11.6050 (16)
C8—C91.505 (3)O3—S11.4208 (17)
C8—C131.563 (2)O4—S11.4272 (15)
C9—C101.318 (3)
C2—C1—C6120.70 (19)O5—C11—C12100.80 (15)
C2—C1—S1120.42 (14)C10—C11—C12107.76 (17)
C6—C1—S1118.88 (15)O5—C11—H11115.0
C3—C2—C1120.03 (18)C10—C11—H11115.0
C3—C2—H2120.0C12—C11—H11115.0
C1—C2—H2120.0C13—C12—C11100.37 (14)
C2—C3—C4118.14 (19)C13—C12—H12A111.7
C2—C3—H3120.9C11—C12—H12A111.7
C4—C3—H3120.9C13—C12—H12B111.7
C5—C4—C3122.68 (18)C11—C12—H12B111.7
C5—C4—N1118.22 (17)H12A—C12—H12B109.5
C3—C4—N1119.08 (18)C14—C13—C12117.59 (14)
C4—C5—C6118.95 (17)C14—C13—C8102.66 (14)
C4—C5—H5120.5C12—C13—C8102.01 (14)
C6—C5—H5120.5C14—C13—Cl1109.40 (13)
C5—C6—C1119.42 (18)C12—C13—Cl1114.20 (13)
C5—C6—H6120.3C8—C13—Cl1109.84 (11)
C1—C6—H6120.3N2—C14—C13104.26 (13)
N2—C7—C8103.29 (13)N2—C14—H14A110.9
N2—C7—H7A111.1C13—C14—H14A110.9
C8—C7—H7A111.1N2—C14—H14B110.9
N2—C7—H7B111.1C13—C14—H14B110.9
C8—C7—H7B111.1H14A—C14—H14B108.9
H7A—C7—H7B109.1O1—N1—O2123.69 (19)
O5—C8—C7112.73 (15)O1—N1—C4118.23 (19)
O5—C8—C9101.80 (14)O2—N1—C4118.07 (18)
C7—C8—C9125.36 (15)C7—N2—C14112.62 (14)
O5—C8—C1398.31 (12)C7—N2—S1120.83 (12)
C7—C8—C13106.67 (14)C14—N2—S1122.85 (13)
C9—C8—C13108.70 (15)C8—O5—C1196.05 (13)
C10—C9—C8105.36 (17)O3—S1—O4120.93 (11)
C10—C9—H9127.3O3—S1—N2106.96 (10)
C8—C9—H9127.3O4—S1—N2106.85 (9)
C9—C10—C11106.33 (18)O3—S1—C1106.78 (10)
C9—C10—H10126.8O4—S1—C1107.07 (10)
C11—C10—H10126.8N2—S1—C1107.66 (9)
O5—C11—C10101.43 (16)
C6—C1—C2—C3−2.6 (3)C7—C8—C13—Cl183.44 (16)
S1—C1—C2—C3177.44 (17)C9—C8—C13—Cl1−54.21 (17)
C1—C2—C3—C42.0 (3)C12—C13—C14—N2139.34 (16)
C2—C3—C4—C50.6 (3)C8—C13—C14—N228.35 (18)
C2—C3—C4—N1−177.90 (18)Cl1—C13—C14—N2−88.26 (15)
C3—C4—C5—C6−2.6 (3)C5—C4—N1—O1−157.46 (19)
N1—C4—C5—C6175.92 (19)C3—C4—N1—O121.1 (3)
C4—C5—C6—C11.9 (3)C5—C4—N1—O221.4 (3)
C2—C1—C6—C50.6 (3)C3—C4—N1—O2−159.99 (19)
S1—C1—C6—C5−179.46 (16)C8—C7—N2—C14−5.1 (2)
N2—C7—C8—O5−83.60 (17)C8—C7—N2—S1−164.04 (13)
N2—C7—C8—C9151.72 (18)C13—C14—N2—C7−15.5 (2)
N2—C7—C8—C1323.20 (18)C13—C14—N2—S1142.87 (14)
O5—C8—C9—C1032.8 (2)C7—C8—O5—C11173.09 (15)
C7—C8—C9—C10162.04 (19)C9—C8—O5—C11−50.15 (16)
C13—C8—C9—C10−70.3 (2)C13—C8—O5—C1161.04 (15)
C8—C9—C10—C11−0.7 (2)C10—C11—O5—C849.46 (17)
C9—C10—C11—O5−31.3 (2)C12—C11—O5—C8−61.35 (16)
C9—C10—C11—C1274.1 (2)C7—N2—S1—O3−46.28 (18)
O5—C11—C12—C1335.15 (17)C14—N2—S1—O3157.01 (15)
C10—C11—C12—C13−70.69 (18)C7—N2—S1—O4−177.11 (15)
C11—C12—C13—C14−109.52 (18)C14—N2—S1—O426.18 (18)
C11—C12—C13—C81.83 (17)C7—N2—S1—C168.16 (17)
C11—C12—C13—Cl1120.25 (14)C14—N2—S1—C1−88.54 (16)
O5—C8—C13—C1483.97 (15)C2—C1—S1—O3−157.40 (17)
C7—C8—C13—C14−32.86 (17)C6—C1—S1—O322.68 (19)
C9—C8—C13—C14−170.51 (15)C2—C1—S1—O4−26.55 (19)
O5—C8—C13—C12−38.24 (15)C6—C1—S1—O4153.53 (16)
C7—C8—C13—C12−155.07 (15)C2—C1—S1—N288.03 (17)
C9—C8—C13—C1267.28 (17)C6—C1—S1—N2−91.89 (17)
O5—C8—C13—Cl1−159.73 (11)
D—H···AD—HH···AD···AD—H···A
C2—H2···O4i0.932.583.437 (3)154
C14—H14B···O5ii0.972.543.317 (2)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O4i 0.932.583.437 (3)154
C14—H14B⋯O5ii 0.972.543.317 (2)137

Symmetry codes: (i) ; (ii) .

  9 in total

1.  Tandem Dielsminus signAlder Cycloadditions in Organic Synthesis.

Authors:  Jeffrey D. Winkler
Journal:  Chem Rev       Date:  1996-02-01       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Several convenient methods for the synthesis of 2-amido substituted furans.

Authors:  Albert Padwa; Kenneth R Crawford; Paitoon Rashatasakhon; Mickea Rose
Journal:  J Org Chem       Date:  2003-04-04       Impact factor: 4.354

4.  Vibrational spectroscopy investigation using ab initio and density functional theory analysis on the structure of 5-chloro-10-oxa-3-thia-tricyclo[5.2.1.0(1,5)]dec-8-ene-3,3-dioxide.

Authors:  Hakan Arslan; Aydin Demircan; Ersen Göktürk
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2007-03-18       Impact factor: 4.098

5.  Thermal and sonochemical studies on the Diels-Alder cycloadditions of masked o-benzoquinones with furans: new insights into the reaction mechanism.

Authors:  Martín Avalos; Reyes Babiano; Noemi Cabello; Pedro Cintas; Michael B Hursthouse; José L Jiménez; Mark E Light; Juan C Palacios
Journal:  J Org Chem       Date:  2003-09-19       Impact factor: 4.354

6.  An atom-economical approach to conformationally constrained tricyclic nitrogen heterocycles via sequential and tandem Ugi/intramolecular Diels-Alder reaction of pyrrole.

Authors:  K Paulvannan
Journal:  J Org Chem       Date:  2004-02-20       Impact factor: 4.354

7.  From furans to anilines: toward one-pot two-step amination/diels-alder sequences.

Authors:  Raouf Medimagh; Sylvain Marque; Damien Prim; Saber Chatti; Hédi Zarrouk
Journal:  J Org Chem       Date:  2008-02-27       Impact factor: 4.354

8.  (3aR,6S,7aR)-7a-Bromo-2-[(4-methyl-phen-yl)sulfon-yl]-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-isoindole.

Authors:  Başak Koşar; Aydın Demircan; Hakan Arslan; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-31

9.  (3aR*,6S*,7aR*)-7a-Chloro-6-methyl-2-(4-methyl-phenyl-sulfon-yl)-2,3,3a,6,7,7a-hexa-hydro-3a,6-ep-oxy-1H-isoindole.

Authors:  Ersin Temel; Aydın Demircan; Gözde Beyazova; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17
  9 in total
  3 in total

1.  Crystal structure and Hirshfeld surface analysis of 4,5-di-bromo-6-methyl-2-phenyl-2,3,3a,4,5,6,7,7a-octa-hydro-3a,6-ep-oxy-1H-isoindol-1-one.

Authors:  Dmitriy F Mertsalov; Maryana A Nadirova; Lala V Chervyakova; Mikhail S Grigoriev; Evgeniya R Shelukho; Sevim Türktekin Çelikesir; Mehmet Akkurt; Sixberth Mlowe
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-09

2.  Crystal structure and Hirshfeld surface analysis of (RS)-3-hy-droxy-2-{[(3aRS,6RS,7aRS)-2-(4-methyl-phenyl-sulfon-yl)-2,3,3a,6,7,7a-hexa-hydro-3a,6-ep-oxy-1H-isoindol-6-yl]meth-yl}isoindolin-1-one.

Authors:  Dmitriy F Mertsalov; Maryana A Nadirova; Elena A Sorokina; Marina A Vinokurova; Sevim Türktekin Çelikesir; Mehmet Akkurt; Irina A Kolesnik; Ajaya Bhattarai
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-16

3.  Crystal structure and Hirshfeld surface analysis of 2-benzyl-4,5-di-bromo-2,3,3a,4,5,6,7,7a-octa-hydro-3a,6-ep-oxy-1H-isoindol-1-one.

Authors:  Dmitriy F Mertsalov; Vladimir P Zaytsev; Kuzma M Pokazeev; Mikhail S Grigoriev; Alexander V Bachinsky; Sevim Türktekin Çelikesir; Mehmet Akkurt; Sixberth Mlowe
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-12
  3 in total

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