Literature DB >> 24454076

(3aR,6S,7aR)-7a-Chloro-6-methyl-2-(4-nitro-phenyl-sulfon-yl)-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-iso-indole.

Aydın Demircan1, Ersin Temel2, Muhammet Kasım Kandemir1, Medine Colak1, Orhan Büyükgüngör2.   

Abstract

In the title compound, C15H15ClN2O5S, the tetra-hydro-furan ring adopts an envelope conformation with the O atom as the flap. The pyrrolidine ring adopts an envelope conformation with the chlorine-substituted C atom as the flap. In the crystal, two types of C-H⋯O hydrogen bonds generate R (2) 2(20) and R (4) 4(26) rings, with adjacent rings running parallel to ac plane. Further C-H⋯O hydrogen bonds form a C(6) chain, linking the mol-ecules in the b-axis direction.

Entities:  

Year:  2013        PMID: 24454076      PMCID: PMC3884300          DOI: 10.1107/S1600536813026329

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chemical background to protecting groups, see: Greene & Wuts (1999 ▶); Romanski et al. (2012 ▶); Chan & White (2004 ▶); Yasushi & Higuchi (2006 ▶); Blanc & Bochet (2007 ▶); Demircan & Parsons (2002 ▶); Demirtaş et al. (2002 ▶); Katritzky et al. (2004 ▶); Merlin et al. (1988 ▶); Büyükgüngör et al. (2005 ▶); Koşar et al. (2006a ▶,b ▶); Karaarslan et al. (2007 ▶); Demircan et al. (2011 ▶); Temel et al. (2011 ▶, 2012 ▶). For puckering parameters, see: Cremer & Pople, (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C15H15ClN2O5S M = 370.80 Monoclinic, a = 8.6049 (5) Å b = 7.1949 (3) Å c = 26.8195 (15) Å β = 101.186 (4)° V = 1628.89 (15) Å3 Z = 4 Mo Kα radiation μ = 0.39 mm−1 T = 296 K 0.48 × 0.24 × 0.02 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.894, T max = 0.992 13941 measured reflections 3449 independent reflections 1564 reflections with I > 2σ(I) R int = 0.090

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.192 S = 0.89 3449 reflections 217 parameters H-atom parameters constrained Δρmax = 1.12 e Å−3 Δρmin = −0.37 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶ ); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813026329/bt6935sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026329/bt6935Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813026329/bt6935Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15ClN2O5SF(000) = 768
Mr = 370.80Dx = 1.512 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 13941 reflections
a = 8.6049 (5) Åθ = 1.6–27.2°
b = 7.1949 (3) ŵ = 0.39 mm1
c = 26.8195 (15) ÅT = 296 K
β = 101.186 (4)°Plate, colorless
V = 1628.89 (15) Å30.48 × 0.24 × 0.02 mm
Z = 4
Stoe IPDS 2 diffractometer3449 independent reflections
Radiation source: fine-focus sealed tube1564 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.090
rotation method scansθmax = 26.8°, θmin = 1.6°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)h = −10→10
Tmin = 0.894, Tmax = 0.992k = −9→9
13941 measured reflectionsl = −33→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.192H-atom parameters constrained
S = 0.89w = 1/[σ2(Fo2) + (0.1022P)2] where P = (Fo2 + 2Fc2)/3
3449 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 1.12 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5887 (5)0.4475 (7)0.44296 (17)0.0556 (12)
C20.5543 (5)0.2605 (7)0.44330 (18)0.0618 (13)
H20.46670.21390.42090.074*
C30.6482 (6)0.1425 (7)0.47633 (17)0.0616 (13)
H30.62570.01610.47640.074*
C40.7759 (5)0.2143 (7)0.50928 (17)0.0579 (12)
C50.8113 (5)0.4015 (8)0.51046 (17)0.0630 (13)
H50.89790.44740.53340.076*
C60.7182 (5)0.5177 (7)0.47768 (18)0.0608 (13)
H60.74050.64430.47830.073*
C70.7168 (6)0.6656 (7)0.34900 (18)0.0594 (12)
H7A0.78320.65010.38240.071*
H7B0.70800.79710.34100.071*
C80.7840 (5)0.5617 (6)0.30954 (17)0.0573 (12)
C90.9556 (6)0.5353 (7)0.3091 (2)0.0727 (15)
H91.03980.55020.33630.087*
C100.9638 (6)0.4871 (8)0.2628 (2)0.0741 (15)
H101.05500.45570.25100.089*
C110.7968 (6)0.4919 (7)0.23212 (18)0.0599 (12)
C120.7102 (6)0.3187 (7)0.2476 (2)0.0691 (14)
H12A0.60750.30120.22570.083*
H12B0.77300.20680.24760.083*
C130.6946 (6)0.3746 (6)0.30125 (18)0.0594 (12)
C140.5329 (5)0.4221 (7)0.31263 (18)0.0613 (12)
H14A0.45920.45370.28160.074*
H14B0.49060.31780.32860.074*
C150.7767 (7)0.5299 (9)0.1765 (2)0.0832 (17)
H15A0.82700.64560.17140.100*
H15B0.66590.53720.16180.100*
H15C0.82440.43140.16050.100*
N10.8795 (6)0.0885 (8)0.54414 (17)0.0793 (13)
N20.5591 (4)0.5831 (5)0.34738 (13)0.0522 (9)
O10.8474 (6)−0.0760 (7)0.54284 (18)0.1241 (18)
O20.9903 (6)0.1529 (6)0.57330 (19)0.1193 (17)
O30.4999 (4)0.7806 (5)0.41540 (13)0.0780 (10)
O40.3234 (4)0.5168 (6)0.38233 (13)0.0780 (11)
O50.7281 (4)0.6367 (4)0.25862 (11)0.0637 (9)
S10.47826 (14)0.59405 (19)0.39663 (5)0.0621 (4)
Cl10.79058 (18)0.2099 (2)0.34891 (6)0.0899 (5)
U11U22U33U12U13U23
C10.050 (2)0.063 (3)0.052 (3)−0.006 (2)0.007 (2)−0.009 (2)
C20.055 (3)0.072 (4)0.054 (3)−0.019 (2)0.002 (2)−0.012 (2)
C30.072 (3)0.059 (3)0.053 (3)−0.020 (2)0.011 (2)−0.006 (2)
C40.058 (3)0.066 (3)0.048 (3)−0.005 (2)0.007 (2)0.003 (2)
C50.057 (3)0.079 (4)0.049 (3)−0.017 (3)0.001 (2)−0.004 (3)
C60.062 (3)0.064 (3)0.055 (3)−0.015 (2)0.009 (2)−0.009 (2)
C70.067 (3)0.049 (3)0.058 (3)−0.011 (2)0.001 (2)−0.006 (2)
C80.054 (3)0.052 (3)0.061 (3)−0.002 (2)−0.002 (2)−0.004 (2)
C90.057 (3)0.073 (4)0.086 (4)−0.014 (3)0.007 (3)0.000 (3)
C100.065 (3)0.069 (4)0.090 (4)−0.007 (3)0.018 (3)0.001 (3)
C110.069 (3)0.050 (3)0.061 (3)0.005 (2)0.014 (2)−0.003 (2)
C120.066 (3)0.060 (3)0.079 (4)−0.002 (3)0.007 (3)−0.018 (3)
C130.070 (3)0.045 (3)0.066 (3)−0.004 (2)0.018 (2)−0.004 (2)
C140.058 (3)0.056 (3)0.066 (3)−0.002 (2)0.000 (2)−0.018 (2)
C150.100 (4)0.081 (4)0.071 (4)0.009 (3)0.022 (3)0.002 (3)
N10.085 (3)0.083 (4)0.064 (3)−0.015 (3)−0.001 (2)0.008 (3)
N20.0494 (19)0.054 (2)0.050 (2)−0.0019 (18)0.0006 (16)−0.0083 (18)
O10.158 (4)0.077 (3)0.110 (4)−0.019 (3)−0.042 (3)0.016 (3)
O20.111 (3)0.097 (3)0.122 (4)−0.026 (3)−0.047 (3)0.024 (3)
O30.084 (2)0.073 (2)0.073 (2)0.0175 (19)0.0053 (18)−0.0221 (19)
O40.0455 (18)0.107 (3)0.078 (2)0.0014 (18)0.0031 (16)−0.012 (2)
O50.076 (2)0.054 (2)0.0566 (19)0.0075 (16)0.0016 (16)0.0036 (15)
S10.0529 (7)0.0696 (9)0.0603 (7)0.0052 (6)0.0027 (5)−0.0132 (7)
Cl10.1013 (11)0.0687 (9)0.1046 (12)0.0213 (8)0.0322 (9)0.0296 (8)
C1—C21.378 (7)C10—C111.512 (7)
C1—C61.401 (6)C10—H100.9300
C1—S11.761 (5)C11—O51.450 (5)
C2—C31.372 (7)C11—C151.494 (7)
C2—H20.9300C11—C121.549 (7)
C3—C41.371 (6)C12—C131.524 (7)
C3—H30.9300C12—H12A0.9700
C4—C51.380 (7)C12—H12B0.9700
C4—N11.471 (7)C13—C141.520 (6)
C5—C61.357 (7)C13—Cl11.819 (5)
C5—H50.9300C14—N21.476 (5)
C6—H60.9300C14—H14A0.9700
C7—N21.474 (6)C14—H14B0.9700
C7—C81.500 (7)C15—H15A0.9600
C7—H7A0.9700C15—H15B0.9600
C7—H7B0.9700C15—H15C0.9600
C8—O51.460 (5)N1—O21.202 (6)
C8—C91.492 (7)N1—O11.214 (6)
C8—C131.545 (6)N2—S11.610 (4)
C9—C101.302 (7)O3—S11.433 (4)
C9—H90.9300O4—S11.426 (3)
C2—C1—C6119.5 (4)C15—C11—C12116.5 (4)
C2—C1—S1120.1 (3)C10—C11—C12107.0 (4)
C6—C1—S1120.3 (4)C13—C12—C11100.1 (4)
C3—C2—C1120.5 (4)C13—C12—H12A111.7
C3—C2—H2119.7C11—C12—H12A111.7
C1—C2—H2119.7C13—C12—H12B111.7
C4—C3—C2118.8 (5)C11—C12—H12B111.7
C4—C3—H3120.6H12A—C12—H12B109.5
C2—C3—H3120.6C14—C13—C12120.0 (4)
C3—C4—C5121.9 (5)C14—C13—C8103.0 (4)
C3—C4—N1119.3 (5)C12—C13—C8103.5 (4)
C5—C4—N1118.8 (4)C14—C13—Cl1108.3 (3)
C6—C5—C4119.1 (4)C12—C13—Cl1112.4 (3)
C6—C5—H5120.4C8—C13—Cl1108.7 (3)
C4—C5—H5120.4N2—C14—C13105.7 (4)
C5—C6—C1120.2 (5)N2—C14—H14A110.6
C5—C6—H6119.9C13—C14—H14A110.6
C1—C6—H6119.9N2—C14—H14B110.6
N2—C7—C8104.9 (3)C13—C14—H14B110.6
N2—C7—H7A110.8H14A—C14—H14B108.7
C8—C7—H7A110.8C11—C15—H15A109.5
N2—C7—H7B110.8C11—C15—H15B109.5
C8—C7—H7B110.8H15A—C15—H15B109.5
H7A—C7—H7B108.8C11—C15—H15C109.5
O5—C8—C9100.7 (4)H15A—C15—H15C109.5
O5—C8—C7111.9 (4)H15B—C15—H15C109.5
C9—C8—C7126.0 (4)O2—N1—O1122.8 (5)
O5—C8—C1397.0 (3)O2—N1—C4118.9 (5)
C9—C8—C13110.7 (4)O1—N1—C4118.4 (4)
C7—C8—C13106.6 (4)C7—N2—C14111.2 (3)
C10—C9—C8106.2 (5)C7—N2—S1119.9 (3)
C10—C9—H9126.9C14—N2—S1121.3 (3)
C8—C9—H9126.9C11—O5—C895.8 (3)
C9—C10—C11107.0 (5)O4—S1—O3120.7 (2)
C9—C10—H10126.5O4—S1—N2106.86 (19)
C11—C10—H10126.5O3—S1—N2106.7 (2)
O5—C11—C15112.3 (4)O4—S1—C1107.7 (2)
O5—C11—C10100.6 (4)O3—S1—C1107.3 (2)
C15—C11—C10117.5 (4)N2—S1—C1106.8 (2)
O5—C11—C12100.6 (4)
C6—C1—C2—C3−1.8 (7)O5—C8—C13—Cl1159.5 (3)
S1—C1—C2—C3174.2 (4)C9—C8—C13—Cl155.2 (5)
C1—C2—C3—C40.6 (7)C7—C8—C13—Cl1−85.1 (4)
C2—C3—C4—C50.7 (7)C12—C13—C14—N2−139.8 (4)
C2—C3—C4—N1−178.7 (4)C8—C13—C14—N2−25.7 (5)
C3—C4—C5—C6−0.8 (7)Cl1—C13—C14—N289.3 (4)
N1—C4—C5—C6178.6 (4)C3—C4—N1—O2−179.2 (5)
C4—C5—C6—C1−0.4 (7)C5—C4—N1—O21.4 (8)
C2—C1—C6—C51.7 (7)C3—C4—N1—O1−0.6 (8)
S1—C1—C6—C5−174.3 (4)C5—C4—N1—O1180.0 (5)
N2—C7—C8—O583.0 (4)C8—C7—N2—C145.6 (5)
N2—C7—C8—C9−154.3 (4)C8—C7—N2—S1155.4 (3)
N2—C7—C8—C13−21.9 (5)C13—C14—N2—C713.2 (5)
O5—C8—C9—C10−34.8 (5)C13—C14—N2—S1−136.2 (3)
C7—C8—C9—C10−162.2 (5)C15—C11—O5—C8−174.7 (4)
C13—C8—C9—C1067.1 (5)C10—C11—O5—C8−48.9 (4)
C8—C9—C10—C112.9 (6)C12—C11—O5—C860.7 (4)
C9—C10—C11—O530.0 (5)C9—C8—O5—C1151.2 (4)
C9—C10—C11—C15152.2 (5)C7—C8—O5—C11−172.7 (4)
C9—C10—C11—C12−74.5 (5)C13—C8—O5—C11−61.6 (4)
O5—C11—C12—C13−33.9 (4)C7—N2—S1—O4175.4 (3)
C15—C11—C12—C13−155.5 (4)C14—N2—S1—O4−37.8 (4)
C10—C11—C12—C1370.7 (5)C7—N2—S1—O345.1 (4)
C11—C12—C13—C14110.0 (5)C14—N2—S1—O3−168.1 (3)
C11—C12—C13—C8−3.9 (5)C7—N2—S1—C1−69.4 (4)
C11—C12—C13—Cl1−121.0 (4)C14—N2—S1—C177.3 (4)
O5—C8—C13—C14−85.8 (4)C2—C1—S1—O428.7 (5)
C9—C8—C13—C14169.9 (4)C6—C1—S1—O4−155.3 (4)
C7—C8—C13—C1429.7 (5)C2—C1—S1—O3160.1 (4)
O5—C8—C13—C1239.9 (4)C6—C1—S1—O3−23.9 (4)
C9—C8—C13—C12−64.4 (5)C2—C1—S1—N2−85.8 (4)
C7—C8—C13—C12155.3 (4)C6—C1—S1—N290.2 (4)
D—H···AD—HH···AD···AD—H···A
C3—H3···O3i0.932.463.205 (6)138
C7—H7A···O2ii0.972.513.219 (6)129
C9—H9···O4iii0.932.523.388 (6)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O3i 0.932.463.205 (6)138
C7—H7A⋯O2ii 0.972.513.219 (6)129
C9—H9⋯O4iii 0.932.523.388 (6)155

Symmetry codes: (i) ; (ii) ; (iii) .

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4.  (3aR,6S,7aR)-7a-Bromo-2-methyl-sulfonyl-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-isoindole.

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2.  Crystal structure and Hirshfeld surface analysis of (RS)-3-hy-droxy-2-{[(3aRS,6RS,7aRS)-2-(4-methyl-phenyl-sulfon-yl)-2,3,3a,6,7,7a-hexa-hydro-3a,6-ep-oxy-1H-isoindol-6-yl]meth-yl}isoindolin-1-one.

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