Literature DB >> 22589953

(E)-2-(2-Hy-droxy-5-iodo-benzyl-idene)hydrazinecarboxamide.

Rahman Bikas, Samra Nikbakht Sardari, Seyed Sajjad Hosseini, Gholam Hossein Shahverdizadeh, Behrouz Notash.   

Abstract

In the title mol-ecule, C(8)H(8)IN(3)O(2), there is an intra-molecular O-H⋯N hydrogen bond between the hy-droxy group and the imine N atom, which generates an S(6) ring. In the crystal, the carbonyl O atom accepts two different N-H⋯O hydrogen bonds, which connect mol-ecules with two R(2) (2)(8) motifs.

Entities:  

Year:  2012        PMID: 22589953      PMCID: PMC3344044          DOI: 10.1107/S1600536812010197

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For historical background to semicarbazones, see: Arapov et al. (1987 ▶); Pickart et al. (1983 ▶). For related structures see: Bikas et al. (2010 ▶, 2012a ▶,b ▶); Monfared et al. (2010a ▶). For background to the development of hydrazide derivatives for biological evaluation, see: Carvalho et al. (2008 ▶). For catalytic applications of aroylhydrazones, see: Monfared et al. (2010b ▶). For a similiar structure, see: Abboud et al. (1995 ▶).

Experimental

Crystal data

C8H8IN3O2 M = 305.07 Monoclinic, a = 9.1066 (18) Å b = 7.6277 (15) Å c = 14.375 (3) Å β = 95.31 (3)° V = 994.3 (3) Å3 Z = 4 Mo Kα radiation μ = 3.20 mm−1 T = 120 K 0.25 × 0.13 × 0.12 mm

Data collection

Stoe IPDS 2T diffractometer Absorption correction: numerical (shape of crystal determined optically; X-RED32 and X-SHAPE, Stoe & Cie, 2005 ▶) T min = 0.502, T max = 0.700 10438 measured reflections 2686 independent reflections 2362 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.056 S = 1.13 2686 reflections 143 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.75 e Å−3 Δρmin = −0.71 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010197/vm2154sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010197/vm2154Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812010197/vm2154Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8IN3O2F(000) = 584
Mr = 305.07Dx = 2.038 Mg m3
Monoclinic, P2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ycCell parameters from 2686 reflections
a = 9.1066 (18) Åθ = 2.7–29.2°
b = 7.6277 (15) ŵ = 3.20 mm1
c = 14.375 (3) ÅT = 120 K
β = 95.31 (3)°Block, colorless
V = 994.3 (3) Å30.25 × 0.13 × 0.12 mm
Z = 4
Stoe IPDS 2T diffractometer2686 independent reflections
Radiation source: fine-focus sealed tube2362 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
Detector resolution: 0.15 mm pixels mm-1θmax = 29.2°, θmin = 2.7°
rotation method scansh = −12→12
Absorption correction: numerical (shape of crystal determined optically; X-RED32 and X-SHAPE, Stoe & Cie, 2005)k = −10→10
Tmin = 0.502, Tmax = 0.700l = −18→19
10438 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.056H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0208P)2 + 1.0932P] where P = (Fo2 + 2Fc2)/3
2686 reflections(Δ/σ)max = 0.001
143 parametersΔρmax = 0.75 e Å3
1 restraintΔρmin = −0.71 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.71642 (2)0.52615 (2)1.210107 (13)0.02620 (6)
O21.52011 (18)1.0591 (2)0.88088 (11)0.0160 (3)
N21.3349 (2)0.9116 (3)0.93933 (14)0.0149 (4)
C81.3955 (2)0.9896 (3)0.86612 (16)0.0137 (4)
N31.3205 (2)0.9864 (3)0.78198 (15)0.0166 (4)
N11.1902 (2)0.8602 (3)0.93061 (14)0.0134 (4)
O10.9242 (2)0.8354 (3)0.84348 (13)0.0217 (4)
C10.9856 (3)0.7452 (3)1.00333 (17)0.0139 (4)
C20.8840 (3)0.7661 (3)0.92413 (17)0.0150 (4)
C71.1398 (3)0.7979 (3)1.00415 (16)0.0137 (4)
H71.20360.78601.05990.016*
C60.9357 (3)0.6755 (3)1.08517 (17)0.0165 (5)
H61.00280.66091.13930.020*
C40.6899 (3)0.6494 (3)1.00927 (19)0.0191 (5)
H40.58950.61721.01150.023*
C30.7373 (3)0.7178 (3)0.92780 (18)0.0187 (5)
H30.66910.73190.87420.022*
C50.7893 (3)0.6278 (3)1.08752 (18)0.0173 (5)
H21.380 (4)0.917 (4)0.990 (3)0.022 (8)*
H3A1.244 (4)0.929 (5)0.773 (3)0.029 (9)*
H3B1.359 (4)1.028 (5)0.738 (3)0.028 (9)*
H11.016 (2)0.849 (5)0.849 (3)0.037 (10)*
U11U22U33U12U13U23
I10.03341 (10)0.02256 (9)0.02507 (9)−0.00405 (7)0.01569 (7)0.00293 (7)
O20.0139 (7)0.0241 (10)0.0102 (8)−0.0040 (6)0.0015 (6)−0.0006 (6)
N20.0121 (9)0.0243 (10)0.0081 (9)−0.0052 (8)0.0003 (7)0.0002 (8)
C80.0143 (9)0.0174 (12)0.0095 (9)0.0005 (8)0.0019 (8)−0.0004 (8)
N30.0153 (9)0.0243 (11)0.0101 (9)−0.0040 (8)0.0007 (7)0.0005 (8)
N10.0112 (9)0.0159 (9)0.0132 (9)−0.0012 (7)0.0011 (7)−0.0023 (7)
O10.0150 (9)0.0375 (11)0.0121 (8)−0.0015 (7)−0.0009 (7)0.0058 (7)
C10.0149 (11)0.0130 (12)0.0141 (10)−0.0002 (8)0.0032 (8)−0.0014 (8)
C20.0147 (11)0.0174 (11)0.0131 (11)−0.0005 (8)0.0020 (8)−0.0005 (9)
C70.0130 (10)0.0171 (11)0.0109 (10)−0.0006 (8)0.0010 (8)−0.0011 (8)
C60.0176 (11)0.0180 (12)0.0140 (11)0.0003 (9)0.0030 (9)0.0010 (9)
C40.0147 (11)0.0188 (12)0.0249 (13)−0.0037 (9)0.0070 (9)−0.0054 (10)
C30.0149 (11)0.0231 (13)0.0181 (12)0.0001 (9)0.0017 (9)−0.0031 (9)
C50.0204 (11)0.0137 (11)0.0194 (12)−0.0014 (8)0.0106 (9)0.0005 (9)
I1—C52.089 (2)C1—C61.404 (3)
O2—C81.253 (3)C1—C21.408 (3)
N2—C81.369 (3)C1—C71.460 (3)
N2—N11.369 (3)C2—C31.391 (3)
N2—H20.80 (4)C7—H70.9500
C8—N31.333 (3)C6—C51.385 (3)
N3—H3A0.82 (4)C6—H60.9500
N3—H3B0.81 (4)C4—C51.387 (4)
N1—C71.282 (3)C4—C31.387 (4)
O1—C21.355 (3)C4—H40.9500
O1—H10.841 (18)C3—H30.9500
C8—N2—N1120.5 (2)C3—C2—C1120.0 (2)
C8—N2—H2118 (2)N1—C7—C1120.9 (2)
N1—N2—H2120 (2)N1—C7—H7119.6
O2—C8—N3122.8 (2)C1—C7—H7119.6
O2—C8—N2118.5 (2)C5—C6—C1120.4 (2)
N3—C8—N2118.7 (2)C5—C6—H6119.8
C8—N3—H3A121 (3)C1—C6—H6119.8
C8—N3—H3B118 (3)C5—C4—C3119.9 (2)
H3A—N3—H3B120 (4)C5—C4—H4120.0
C7—N1—N2116.5 (2)C3—C4—H4120.0
C2—O1—H1108 (3)C4—C3—C2120.4 (2)
C6—C1—C2118.8 (2)C4—C3—H3119.8
C6—C1—C7118.9 (2)C2—C3—H3119.8
C2—C1—C7122.3 (2)C6—C5—C4120.4 (2)
O1—C2—C3118.2 (2)C6—C5—I1120.0 (2)
O1—C2—C1121.8 (2)C4—C5—I1119.59 (17)
N1—N2—C8—O2169.1 (2)C2—C1—C6—C50.2 (4)
N1—N2—C8—N3−11.9 (3)C7—C1—C6—C5178.5 (2)
C8—N2—N1—C7−175.9 (2)C5—C4—C3—C2−0.3 (4)
C6—C1—C2—O1178.8 (2)O1—C2—C3—C4−178.8 (2)
C7—C1—C2—O10.6 (4)C1—C2—C3—C40.1 (4)
C6—C1—C2—C3−0.1 (4)C1—C6—C5—C4−0.4 (4)
C7—C1—C2—C3−178.3 (2)C1—C6—C5—I1−179.51 (18)
N2—N1—C7—C1177.8 (2)C3—C4—C5—C60.5 (4)
C6—C1—C7—N1179.1 (2)C3—C4—C5—I1179.59 (19)
C2—C1—C7—N1−2.6 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3B···O2i0.81 (4)2.13 (4)2.920 (3)163 (3)
N2—H2···O2ii0.80 (4)2.00 (4)2.800 (3)176 (3)
O1—H1···N10.84 (2)1.88 (3)2.628 (3)147 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯O2i0.81 (4)2.13 (4)2.920 (3)163 (3)
N2—H2⋯O2ii0.80 (4)2.00 (4)2.800 (3)176 (3)
O1—H1⋯N10.84 (2)1.88 (3)2.628 (3)147 (4)

Symmetry codes: (i) ; (ii) .

  8 in total

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Authors:  Samir A Carvalho; Edson F da Silva; Marcus V N de Souza; Maria C S Lourenço; Felipe R Vicente
Journal:  Bioorg Med Chem Lett       Date:  2007-11-28       Impact factor: 2.823

2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (E)-3-Hydr-oxy-N'-(2-hydroxy-benzyl-idene)-2-naphthohydrazide.

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Authors:  L Pickart; W H Goodwin; W Burgua; T B Murphy; D K Johnson
Journal:  Biochem Pharmacol       Date:  1983-12-15       Impact factor: 5.858

5.  [Radioprotective efficacy of acyl hydrazones].

Authors:  O V Arapov; O F Alferova; E I Levocheskaia; I I Krasil'nikov
Journal:  Radiobiologiia       Date:  1987 Nov-Dec

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7.  2-[((E)-2-{2-[(E)-2-Hy-droxy-benzyl-idene]hydrazinecarbon-yl}hydrazinyl-idene)meth-yl]phenol.

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Authors:  Rahman Bikas; Parisa Mahboubi Anarjan; Seik Weng Ng; Edward R T Tiekink
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  8 in total

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