Literature DB >> 22559319

Optical nanoscopy: from acquisition to analysis.

Travis J Gould1, Samuel T Hess, Joerg Bewersdorf.   

Abstract

Recent advances in far-field microscopy have demonstrated that fluorescence imaging is possible at resolutions well below the long-standing diffraction limit. By exploiting photophysical properties of fluorescent probe molecules, this new class of methods yields a resolving power that is fundamentally diffraction unlimited. Although these methods are becoming more widely used in biological imaging, they must be complemented by suitable data analysis approaches if their potential is to be fully realized. Here we review the basic principles of diffraction-unlimited microscopy and how these principles influence the selection of available algorithms for data analysis. Furthermore, we provide an overview of existing analysis strategies and discuss their application.

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Year:  2012        PMID: 22559319      PMCID: PMC3568761          DOI: 10.1146/annurev-bioeng-071811-150025

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   9.590


  95 in total

1.  Ultrahigh-resolution multicolor colocalization of single fluorescent probes.

Authors:  T D Lacoste; X Michalet; F Pinaud; D S Chemla; A P Alivisatos; S Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-15       Impact factor: 11.205

2.  Particle image correlation spectroscopy (PICS): retrieving nanometer-scale correlations from high-density single-molecule position data.

Authors:  S Semrau; T Schmidt
Journal:  Biophys J       Date:  2006-11-03       Impact factor: 4.033

3.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

4.  Superresolution by localization of quantum dots using blinking statistics.

Authors:  Keith Lidke; Bernd Rieger; Thomas Jovin; Rainer Heintzmann
Journal:  Opt Express       Date:  2005-09-05       Impact factor: 3.894

5.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

6.  Resolution scaling in STED microscopy.

Authors:  Benjamin Harke; Jan Keller; Chaitanya K Ullal; Volker Westphal; Andreas Schönle; Stefan W Hell
Journal:  Opt Express       Date:  2008-03-17       Impact factor: 3.894

7.  Microscopy and its focal switch.

Authors:  Stefan W Hell
Journal:  Nat Methods       Date:  2009-01       Impact factor: 28.547

8.  Real-time computation of subdiffraction-resolution fluorescence images.

Authors:  S Wolter; M Schüttpelz; M Tscherepanow; S VAN DE Linde; M Heilemann; M Sauer
Journal:  J Microsc       Date:  2010-01       Impact factor: 1.758

9.  Simultaneous multiple-emitter fitting for single molecule super-resolution imaging.

Authors:  Fang Huang; Samantha L Schwartz; Jason M Byars; Keith A Lidke
Journal:  Biomed Opt Express       Date:  2011-04-29       Impact factor: 3.732

10.  Coupling between clathrin-dependent endocytic budding and F-BAR-dependent tubulation in a cell-free system.

Authors:  Min Wu; Bo Huang; Morven Graham; Andrea Raimondi; John E Heuser; Xiaowei Zhuang; Pietro De Camilli
Journal:  Nat Cell Biol       Date:  2010-08-22       Impact factor: 28.824

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  22 in total

Review 1.  Neuro at the Nanoscale: Diffraction-Unlimited Imaging with STED Nanoscopy.

Authors:  Jason B Castro; Travis J Gould
Journal:  J Histochem Cytochem       Date:  2015-09-21       Impact factor: 2.479

Review 2.  Precisely and accurately localizing single emitters in fluorescence microscopy.

Authors:  Hendrik Deschout; Francesca Cella Zanacchi; Michael Mlodzianoski; Alberto Diaspro; Joerg Bewersdorf; Samuel T Hess; Kevin Braeckmans
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

Review 3.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

4.  Sodium pump organization in dendritic spines.

Authors:  Hans Blom; Kristoffer Bernhem; Hjalmar Brismar
Journal:  Neurophotonics       Date:  2016-05-04       Impact factor: 3.593

5.  Through-focus or volumetric type of optical imaging methods: a review.

Authors:  Ravikiran Attota
Journal:  J Biomed Opt       Date:  2018-07       Impact factor: 3.170

6.  Determination of two-photon photoactivation rates of fluorescent proteins.

Authors:  Tobias M P Hartwich; Fedor V Subach; Lynn Cooley; Vladislav V Verkhusha; Joerg Bewersdorf
Journal:  Phys Chem Chem Phys       Date:  2013-09-28       Impact factor: 3.676

Review 7.  Progress in quantitative single-molecule localization microscopy.

Authors:  H Deschout; A Shivanandan; P Annibale; M Scarselli; A Radenovic
Journal:  Histochem Cell Biol       Date:  2014-04-20       Impact factor: 4.304

8.  Quantitative single-molecule localization microscopy combined with rule-based modeling reveals ligand-induced TNF-R1 reorganization toward higher-order oligomers.

Authors:  Franziska Fricke; Sebastian Malkusch; Gaby Wangorsch; Johannes F Greiner; Barbara Kaltschmidt; Christian Kaltschmidt; Darius Widera; Thomas Dandekar; Mike Heilemann
Journal:  Histochem Cell Biol       Date:  2014-02-12       Impact factor: 4.304

Review 9.  Optical control and study of biological processes at the single-cell level in a live organism.

Authors:  Zhiping Feng; Weiting Zhang; Jianmin Xu; Carole Gauron; Bertrand Ducos; Sophie Vriz; Michel Volovitch; Ludovic Jullien; Shimon Weiss; David Bensimon
Journal:  Rep Prog Phys       Date:  2013-06-14

10.  Auto-aligning stimulated emission depletion microscope using adaptive optics.

Authors:  Travis J Gould; Emil B Kromann; Daniel Burke; Martin J Booth; Joerg Bewersdorf
Journal:  Opt Lett       Date:  2013-06-01       Impact factor: 3.776

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