Literature DB >> 24748502

Progress in quantitative single-molecule localization microscopy.

H Deschout1, A Shivanandan, P Annibale, M Scarselli, A Radenovic.   

Abstract

With the advent of single-molecule localization microscopy (SMLM) techniques, intracellular proteins can be imaged at unprecedented resolution with high specificity and contrast. These techniques can lead to a better understanding of cell functioning, as they allow, among other applications, counting the number of molecules of a protein specie in a single cell, studying the heterogeneity in protein spatial organization, and probing the spatial interactions between different protein species. However, the use of these techniques for accurate quantitative measurements requires corrections for multiple inherent sources of error, including: overcounting due to multiple localizations of a single fluorophore (i.e., photoblinking), undercounting caused by incomplete photoconversion, uncertainty in the localization of single molecules, sample drift during the long imaging time, and inaccurate image registration in the case of dual-color imaging. In this paper, we review recent efforts that address some of these sources of error in quantitative SMLM and give examples in the context of photoactivated localization microscopy (PALM).

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24748502      PMCID: PMC4072926          DOI: 10.1007/s00418-014-1217-y

Source DB:  PubMed          Journal:  Histochem Cell Biol        ISSN: 0948-6143            Impact factor:   4.304


  75 in total

1.  Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution.

Authors:  Anna Löschberger; Sebastian van de Linde; Marie-Christine Dabauvalle; Bernd Rieger; Mike Heilemann; Georg Krohne; Markus Sauer
Journal:  J Cell Sci       Date:  2012-02-01       Impact factor: 5.285

2.  Cell type-specific β2-adrenergic receptor clusters identified using photoactivated localization microscopy are not lipid raft related, but depend on actin cytoskeleton integrity.

Authors:  Marco Scarselli; Paolo Annibale; Aleksandra Radenovic
Journal:  J Biol Chem       Date:  2012-03-22       Impact factor: 5.157

3.  Subnanometre single-molecule localization, registration and distance measurements.

Authors:  Alexandros Pertsinidis; Yunxiang Zhang; Steven Chu
Journal:  Nature       Date:  2010-07-07       Impact factor: 49.962

4.  A guided tour into subcellular colocalization analysis in light microscopy.

Authors:  S Bolte; F P Cordelières
Journal:  J Microsc       Date:  2006-12       Impact factor: 1.758

5.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

Review 6.  Fluorophore localization algorithms for super-resolution microscopy.

Authors:  Alex Small; Shane Stahlheber
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

Review 7.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

8.  Quantitative super-resolution imaging reveals protein stoichiometry and nanoscale morphology of assembling HIV-Gag virions.

Authors:  Julia Gunzenhäuser; Nicolas Olivier; Thomas Pengo; Suliana Manley
Journal:  Nano Lett       Date:  2012-08-27       Impact factor: 11.189

9.  Single-cell systems biology by super-resolution imaging and combinatorial labeling.

Authors:  Eric Lubeck; Long Cai
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

10.  Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines.

Authors:  Alessandro Ori; Niccolò Banterle; Murat Iskar; Amparo Andrés-Pons; Claudia Escher; Huy Khanh Bui; Lenore Sparks; Victor Solis-Mezarino; Oliver Rinner; Peer Bork; Edward A Lemke; Martin Beck
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

View more
  31 in total

1.  SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data.

Authors:  Florian Levet; Eric Hosy; Adel Kechkar; Corey Butler; Anne Beghin; Daniel Choquet; Jean-Baptiste Sibarita
Journal:  Nat Methods       Date:  2015-09-07       Impact factor: 28.547

Review 2.  The Histochemistry and Cell Biology pandect: the year 2014 in review.

Authors:  Douglas J Taatjes; Jürgen Roth
Journal:  Histochem Cell Biol       Date:  2015-03-06       Impact factor: 4.304

3.  Molecular Counting with Localization Microscopy: A Bayesian Estimate Based on Fluorophore Statistics.

Authors:  Daniel Nino; Nafiseh Rafiei; Yong Wang; Anton Zilman; Joshua N Milstein
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

4.  Temporal accumulation analysis provides simplified artifact-free analysis of membrane-protein nanoclusters.

Authors:  Christoph Spahn; Frank Herrmannsdörfer; Thomas Kuner; Mike Heilemann
Journal:  Nat Methods       Date:  2016-11-29       Impact factor: 28.547

Review 5.  Correlative video-light-electron microscopy: development, impact and perspectives.

Authors:  Riccardo Rizzo; Seetharaman Parashuraman; Alberto Luini
Journal:  Histochem Cell Biol       Date:  2014-07-17       Impact factor: 4.304

6.  Polarization of excitation light influences molecule counting in single-molecule localization microscopy.

Authors:  Ye Chen; Han Lin; Mandy J Ludford-Menting; Andrew H Clayton; Min Gu; Sarah M Russell
Journal:  Histochem Cell Biol       Date:  2014-09-03       Impact factor: 4.304

7.  In this special issue.

Authors:  Jürgen Roth; Mike Heilemann
Journal:  Histochem Cell Biol       Date:  2014-06-05       Impact factor: 4.304

Review 8.  Counting numbers of synaptic proteins: absolute quantification and single molecule imaging techniques.

Authors:  Angela Patrizio; Christian G Specht
Journal:  Neurophotonics       Date:  2016-06-03       Impact factor: 3.593

9.  Sodium pump organization in dendritic spines.

Authors:  Hans Blom; Kristoffer Bernhem; Hjalmar Brismar
Journal:  Neurophotonics       Date:  2016-05-04       Impact factor: 3.593

10.  Correlation analysis framework for localization-based superresolution microscopy.

Authors:  Joerg Schnitzbauer; Yina Wang; Shijie Zhao; Matthew Bakalar; Tulip Nuwal; Baohui Chen; Bo Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.