Literature DB >> 17085496

Particle image correlation spectroscopy (PICS): retrieving nanometer-scale correlations from high-density single-molecule position data.

S Semrau1, T Schmidt.   

Abstract

A new data analysis tool that resolves correlations on the nanometer length and millisecond timescale is derived. This tool, adapted from methods of spatiotemporal image correlation spectroscopy, exploits the high positional accuracy of single-particle tracking. While conventional tracking methods break down if multiple particle trajectories intersect, our method works in principle for arbitrarily large molecule densities and diffusion coefficients as long as individual molecules can be identified. The method is computationally cheap and robust and requires no a priori knowledge about the dynamical coefficients, as opposed to other methods. We demonstrate the validity of the method by Monte Carlo simulations and by application to single-molecule tracking data of membrane-anchored proteins in live cells. The results faithfully reproduce those obtained by conventional tracking. Upon activation, a fraction of the small GTPase H-Ras is confined to domains of <200 nm diameter, which further substantiates the prediction that membrane organization is a determinant in cellular signaling.

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Year:  2006        PMID: 17085496      PMCID: PMC1751376          DOI: 10.1529/biophysj.106.092577

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

1.  Single-molecule imaging analysis of Ras activation in living cells.

Authors:  Hideji Murakoshi; Ryota Iino; Takeshi Kobayashi; Takahiro Fujiwara; Chika Ohshima; Akihiko Yoshimura; Akihiro Kusumi
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-29       Impact factor: 11.205

Review 2.  Membrane domains.

Authors:  Sushmita Mukherjee; Frederick R Maxfield
Journal:  Annu Rev Cell Dev Biol       Date:  2004       Impact factor: 13.827

Review 3.  Sorting single molecules: application to diagnostics and evolutionary biotechnology.

Authors:  M Eigen; R Rigler
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-21       Impact factor: 11.205

4.  Nanovid tracking: a new automatic method for the study of mobility in living cells based on colloidal gold and video microscopy.

Authors:  H Geerts; M De Brabander; R Nuydens; S Geuens; M Moeremans; J De Mey; P Hollenbeck
Journal:  Biophys J       Date:  1987-11       Impact factor: 4.033

5.  Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application.

Authors:  N O Petersen; P L Höddelius; P W Wiseman; O Seger; K E Magnusson
Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

6.  Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells.

Authors:  A Kusumi; Y Sako; M Yamamoto
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

7.  The fluid mosaic model of the structure of cell membranes.

Authors:  S J Singer; G L Nicolson
Journal:  Science       Date:  1972-02-18       Impact factor: 47.728

8.  Automated detection and tracking of individual and clustered cell surface low density lipoprotein receptor molecules.

Authors:  R N Ghosh; W W Webb
Journal:  Biophys J       Date:  1994-05       Impact factor: 4.033

Review 9.  Lipid rafts: elusive or illusive?

Authors:  Sean Munro
Journal:  Cell       Date:  2003-11-14       Impact factor: 41.582

10.  Insulin stimulation of gene expression mediated by p21ras activation.

Authors:  B M Burgering; R H Medema; J A Maassen; M L van de Wetering; A J van der Eb; F McCormick; J L Bos
Journal:  EMBO J       Date:  1991-05       Impact factor: 11.598

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  30 in total

1.  An Intermittent Model for Intracellular Motions of Gold Nanostars by k-Space Scattering Image Correlation.

Authors:  Margaux Bouzin; Laura Sironi; Giuseppe Chirico; Laura D'Alfonso; Donato Inverso; Piersandro Pallavicini; Maddalena Collini
Journal:  Biophys J       Date:  2015-12-01       Impact factor: 4.033

Review 2.  Single-molecule detection and tracking in plants.

Authors:  Markus Langhans; Tobias Meckel
Journal:  Protoplasma       Date:  2014-01-03       Impact factor: 3.356

3.  Fast spatiotemporal correlation spectroscopy to determine protein lateral diffusion laws in live cell membranes.

Authors:  Carmine Di Rienzo; Enrico Gratton; Fabio Beltram; Francesco Cardarelli
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-08       Impact factor: 11.205

4.  A random motility assay based on image correlation spectroscopy.

Authors:  Michael Prummer; Dorothee Kling; Vanessa Trefzer; Thilo Enderle; Sannah Zoffmann; Marco Prunotto
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

5.  Tracking image correlation: combining single-particle tracking and image correlation.

Authors:  A Dupont; K Stirnnagel; D Lindemann; D C Lamb
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

6.  Actin mediates the nanoscale membrane organization of the clustered membrane protein influenza hemagglutinin.

Authors:  Manasa V Gudheti; Nikki M Curthoys; Travis J Gould; Dahan Kim; Mudalige S Gunewardene; Kristin A Gabor; Julie A Gosse; Carol H Kim; Joshua Zimmerberg; Samuel T Hess
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

7.  Microsecond single-molecule tracking (μsSMT).

Authors:  Stefan Semrau; Anna Pezzarossa; Thomas Schmidt
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

8.  Quantifying biomolecule diffusivity using an optimal Bayesian method.

Authors:  Guillaume Voisinne; Antigoni Alexandrou; Jean-Baptiste Masson
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

9.  Quantification of biological interactions with particle image cross-correlation spectroscopy (PICCS).

Authors:  Stefan Semrau; Laurent Holtzer; Marcos González-Gaitán; Thomas Schmidt
Journal:  Biophys J       Date:  2011-04-06       Impact factor: 4.033

10.  Single-Molecule Tracking and Its Application in Biomolecular Binding Detection.

Authors:  Cong Liu; Yen-Liang Liu; Evan P Perillo; Andrew K Dunn; Hsin-Chih Yeh
Journal:  IEEE J Sel Top Quantum Electron       Date:  2016-05-17       Impact factor: 4.544

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