Literature DB >> 23223630

A role for A-to-I RNA editing in temperature adaptation.

Sandra C Garrett1, Joshua J C Rosenthal.   

Abstract

A-to-I RNA editing can recode mRNAs, giving organisms the option to express diverse, functionally distinct protein isoforms. Here, we propose that RNA editing is inherently geared for temperature adaptation because it tends to recode to smaller, less stabilizing amino acids. Studies on how editing affects protein function support this idea.

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Year:  2012        PMID： 23223630      PMCID： PMC4208822          DOI： 10.1152/physiol.00029.2012

Source DB:  PubMed          Journal:  Physiology (Bethesda)        ISSN： 1548-9221


  63 in total

1.  Structure and sequence determinants required for the RNA editing of ADAR2 substrates.

Authors:  T Renee Dawson; Christopher L Sansam; Ronald B Emeson
Journal:  J Biol Chem       Date:  2003-11-30       Impact factor: 5.157

2.  Widespread RNA editing of embedded alu elements in the human transcriptome.

Authors:  Dennis D Y Kim; Thomas T Y Kim; Thomas Walsh; Yoshifumi Kobayashi; Tara C Matise; Steven Buyske; Abram Gabriel
Journal:  Genome Res       Date:  2004-09       Impact factor: 9.043

3.  Preferred amino acids and thermostability.

Authors:  Sávio T Farias; Maria Christina M Bonato
Journal:  Genet Mol Res       Date:  2003-12-30

4.  Replacement of staphylococcal nuclease hydrophobic core residues with those from thermophilic homologues indicates packing is improved in some thermostable proteins.

Authors:  Junmei Chen; Wesley E Stites
Journal:  J Mol Biol       Date:  2004-11-12       Impact factor: 5.469

5.  Interactions of amino terminal domains of Shaker K channels with a pore blocking site studied with synthetic peptides.

Authors:  R D Murrell-Lagnado; R W Aldrich
Journal:  J Gen Physiol       Date:  1993-12       Impact factor: 4.086

6.  Insights into thermal stability from a comparison of the glutamate dehydrogenases from Pyrococcus furiosus and Thermococcus litoralis.

Authors:  K L Britton; P J Baker; K M Borges; P C Engel; A Pasquo; D W Rice; F T Robb; R Scandurra; T J Stillman; K S Yip
Journal:  Eur J Biochem       Date:  1995-05-01

7.  Evolutionary convergence in adaptation of proteins to temperature: A4-lactate dehydrogenases of Pacific damselfishes (Chromis spp.).

Authors:  Glenn C Johns; George N Somero
Journal:  Mol Biol Evol       Date:  2003-12-05       Impact factor: 16.240

8.  Packing and hydrophobicity effects on protein folding and stability: effects of beta-branched amino acids, valine and isoleucine, on the formation and stability of two-stranded alpha-helical coiled coils/leucine zippers.

Authors:  B Y Zhu; N E Zhou; C M Kay; R S Hodges
Journal:  Protein Sci       Date:  1993-03       Impact factor: 6.725

9.  Control of human potassium channel inactivation by editing of a small mRNA hairpin.

Authors:  Tarun Bhalla; Joshua J C Rosenthal; Miguel Holmgren; Robert Reenan
Journal:  Nat Struct Mol Biol       Date:  2004-09-07       Impact factor: 15.369

10.  Entropic stabilization of proteins and its proteomic consequences.

Authors:  Igor N Berezovsky; William W Chen; Paul J Choi; Eugene I Shakhnovich
Journal:  PLoS Comput Biol       Date:  2005-09-30       Impact factor: 4.475
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  18 in total

Review 1.  Current strategies for Site-Directed RNA Editing using ADARs.

Authors:  Maria Fernanda Montiel-Gonzalez; Juan Felipe Diaz Quiroz; Joshua J C Rosenthal
Journal:  Methods       Date:  2018-11-29       Impact factor: 3.608

Review 2.  The emerging role of RNA editing in plasticity.

Authors:  Joshua J C Rosenthal
Journal:  J Exp Biol       Date:  2015-06       Impact factor: 3.312

3.  Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations.

Authors:  Jonathan S Caplan; Alex H Williams; Eve Marder
Journal:  J Neurosci       Date:  2014-04-02       Impact factor: 6.167

4.  A-to-I RNA editing is developmentally regulated and generally adaptive for sexual reproduction in Neurospora crassa.

Authors:  Huiquan Liu; Yang Li; Daipeng Chen; Zhaomei Qi; Qinhu Wang; Jianhua Wang; Cong Jiang; Jin-Rong Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-28       Impact factor: 11.205

Review 5.  A-to-I RNA editing - immune protector and transcriptome diversifier.

Authors:  Eli Eisenberg; Erez Y Levanon
Journal:  Nat Rev Genet       Date:  2018-08       Impact factor: 53.242

6.  Loss of CaV1.3 RNA editing enhances mouse hippocampal plasticity, learning, and memory.

Authors:  Jing Zhai; Sheeja Navakkode; Sean Qing Zhang Yeow; Kumar Krishna-K; Mui Cheng Liang; Joanne Huifen Koh; Rui Xiong Wong; Wei Ping Yu; Sreedharan Sajikumar; Hua Huang; Tuck Wah Soong
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-01       Impact factor: 12.779

7.  Generation and characterization of new alleles of quiver (qvr) that encodes an extracellular modulator of the Shaker potassium channel.

Authors:  Hongyu Ruan; Atsushi Ueda; Xiaomin Xing; Xuxuan Wan; Benjamin Strub; Spencer Mukai; Kaan Certel; David Green; Kyle Belozerov; Wei-Dong Yao; Wayne Johnson; Jim Jung-Ching Lin; Arthur J Hilliker; Chun-Fang Wu
Journal:  J Neurogenet       Date:  2017-11-09       Impact factor: 1.250

8.  How nontraditional model systems can save us.

Authors:  Amy S Gladfelter
Journal:  Mol Biol Cell       Date:  2015-11-01       Impact factor: 4.138

9.  Analysis of protein thermostability enhancing factors in industrially important thermus bacteria species.

Authors:  Benjamin Kumwenda; Derek Litthauer; Ozlem Tastan Bishop; Oleg Reva
Journal:  Evol Bioinform Online       Date:  2013-08-18       Impact factor: 1.625

10.  The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing.

Authors:  Shahar Alon; Sandra C Garrett; Erez Y Levanon; Sara Olson; Brenton R Graveley; Joshua J C Rosenthal; Eli Eisenberg
Journal:  Elife       Date:  2015-01-08       Impact factor: 8.140
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