Literature DB >> 22198342

Visualizing adenosine-to-inosine RNA editing in the Drosophila nervous system.

James E C Jepson1, Yiannis A Savva, Kyle A Jay, Robert A Reenan.   

Abstract

Informational recoding by adenosine-to-inosine RNA editing diversifies neuronal proteomes by chemically modifying structured mRNAs. However, techniques for analyzing editing activity on substrates in defined neurons in vivo are lacking. Guided by comparative genomics, here we reverse-engineered a fluorescent reporter sensitive to Drosophila melanogaster adenosine deaminase that acts on RNA (dADAR) activity and alterations in dADAR autoregulation. Using this artificial dADAR substrate, we visualized variable patterns of RNA-editing activity in the Drosophila nervous system between individuals. Our results demonstrate the feasibility of structurally mimicking ADAR substrates as a method to regulate protein expression and, potentially, therapeutically repair mutant mRNAs. Our data suggest variable RNA editing as a credible molecular mechanism for mediating individual-to-individual variation in neuronal physiology and behavior.

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Year:  2011        PMID: 22198342     DOI: 10.1038/nmeth.1827

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  28 in total

1.  Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2.

Authors:  M Higuchi; S Maas; F N Single; J Hartner; A Rozov; N Burnashev; D Feldmeyer; R Sprengel; P H Seeburg
Journal:  Nature       Date:  2000-07-06       Impact factor: 49.962

2.  Extensive editing of mRNAs for the squid delayed rectifier K+ channel regulates subunit tetramerization.

Authors:  Joshua J C Rosenthal; Francisco Bezanilla
Journal:  Neuron       Date:  2002-05-30       Impact factor: 17.173

3.  Engineered alterations in RNA editing modulate complex behavior in Drosophila: regulatory diversity of adenosine deaminase acting on RNA (ADAR) targets.

Authors:  James E C Jepson; Yiannis A Savva; Chio Yokose; Arthur U Sugden; Asli Sahin; Robert A Reenan
Journal:  J Biol Chem       Date:  2010-11-15       Impact factor: 5.157

4.  Tuning of RNA editing by ADAR is required in Drosophila.

Authors:  Liam P Keegan; James Brindle; Angela Gallo; Anne Leroy; Robert A Reenan; Mary A O'Connell
Journal:  EMBO J       Date:  2005-05-26       Impact factor: 11.598

5.  Altered editing of serotonin 2C receptor pre-mRNA in the prefrontal cortex of depressed suicide victims.

Authors:  Ilona Gurevich; Hadassah Tamir; Victoria Arango; Andrew J Dwork; J John Mann; Claudia Schmauss
Journal:  Neuron       Date:  2002-04-25       Impact factor: 17.173

Review 6.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

7.  A mammalian reporter system for fast and quantitative detection of intracellular A-to-I RNA editing levels.

Authors:  Willemijn M Gommans; Jill McCane; Gregory S Nacarelli; Stefan Maas
Journal:  Anal Biochem       Date:  2010-01-04       Impact factor: 3.365

8.  Writing memories with light-addressable reinforcement circuitry.

Authors:  Adam Claridge-Chang; Robert D Roorda; Eleftheria Vrontou; Lucas Sjulson; Haiyan Li; Jay Hirsh; Gero Miesenböck
Journal:  Cell       Date:  2009-10-16       Impact factor: 41.582

Review 9.  Drosophila olfactory memory: single genes to complex neural circuits.

Authors:  Alex C Keene; Scott Waddell
Journal:  Nat Rev Neurosci       Date:  2007-05       Impact factor: 34.870

10.  Splice-variant- and stage-specific RNA editing of the Drosophila GABA receptor modulates agonist potency.

Authors:  Andrew K Jones; Steven D Buckingham; Magdalini Papadaki; Maiko Yokota; Benedict M Sattelle; Kazuhiko Matsuda; David B Sattelle
Journal:  J Neurosci       Date:  2009-04-01       Impact factor: 6.167

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  15 in total

1.  Making sense out of nonsense to visualize editing in the fly nervous system.

Authors:  Chammiran Daniel; Marie Ohman
Journal:  Nat Methods       Date:  2012-01-30       Impact factor: 28.547

Review 2.  Current strategies for Site-Directed RNA Editing using ADARs.

Authors:  Maria Fernanda Montiel-Gonzalez; Juan Felipe Diaz Quiroz; Joshua J C Rosenthal
Journal:  Methods       Date:  2018-11-29       Impact factor: 3.608

3.  Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila.

Authors:  Yiannis A Savva; James E C Jepson; Asli Sahin; Arthur U Sugden; Jacquelyn S Dorsky; Lauren Alpert; Charles Lawrence; Robert A Reenan
Journal:  Nat Commun       Date:  2012-04-24       Impact factor: 14.919

4.  RNA editing regulates transposon-mediated heterochromatic gene silencing.

Authors:  Yiannis A Savva; James E C Jepson; Yao-Jen Chang; Rachel Whitaker; Brian C Jones; Georges St Laurent; Michael R Tackett; Philipp Kapranov; Nan Jiang; Guyu Du; Stephen L Helfand; Robert A Reenan
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

5.  Assessing the validity and reproducibility of genome-scale predictions.

Authors:  Lauren A Sugden; Michael R Tackett; Yiannis A Savva; William A Thompson; Charles E Lawrence
Journal:  Bioinformatics       Date:  2013-09-17       Impact factor: 6.937

Review 6.  Deciphering the functions and regulation of brain-enriched A-to-I RNA editing.

Authors:  Jin Billy Li; George M Church
Journal:  Nat Neurosci       Date:  2013-10-28       Impact factor: 24.884

7.  Molecular biology of insect sodium channels and pyrethroid resistance.

Authors:  Ke Dong; Yuzhe Du; Frank Rinkevich; Yoshiko Nomura; Peng Xu; Lingxin Wang; Kristopher Silver; Boris S Zhorov
Journal:  Insect Biochem Mol Biol       Date:  2014-04-03       Impact factor: 4.714

8.  A screening protocol for identification of functional mutants of RNA editing adenosine deaminases.

Authors:  Tristan Eifler; Dalen Chan; Peter A Beal
Journal:  Curr Protoc Chem Biol       Date:  2012-12-01

Review 9.  Emerging strategies for the genetic dissection of gene functions, cell types, and neural circuits in the mammalian brain.

Authors:  Ling Gong; Xue Liu; Jinyun Wu; Miao He
Journal:  Mol Psychiatry       Date:  2021-09-24       Impact factor: 15.992

Review 10.  From Antisense RNA to RNA Modification: Therapeutic Potential of RNA-Based Technologies.

Authors:  Hironori Adachi; Martin Hengesbach; Yi-Tao Yu; Pedro Morais
Journal:  Biomedicines       Date:  2021-05-14
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