Literature DB >> 10880477

RNA editing of the Drosophila para Na(+) channel transcript. Evolutionary conservation and developmental regulation.

C J Hanrahan1, M J Palladino, B Ganetzky, R A Reenan.   

Abstract

Post-transcriptional editing of pre-mRNAs through the action of dsRNA adenosine deaminases results in the modification of particular adenosine (A) residues to inosine (I), which can alter the coding potential of the modified transcripts. We describe here three sites in the para transcript, which encodes the major voltage-activated Na(+) channel polypeptide in Drosophila, where RNA editing occurs. The occurrence of RNA editing at the three sites was found to be developmentally regulated. Editing at two of these sites was also conserved across species between the D. melanogaster and D. virilis. In each case, a highly conserved region was found in the intron downstream of the editing site and this region was shown to be complementary to the region of the exonic editing site. Thus, editing at these sites would appear to involve a mechanism whereby the edited exon forms a base-paired secondary structure with the distant conserved noncoding sequences located in adjacent downstream introns, similar to the mechanism shown for A-to-I RNA editing of mammalian glutamate receptor subunits (GluRs). For the third site, neither RNA editing nor the predicted RNA secondary structures were evolutionarily conserved. Transcripts from transgenic Drosophila expressing a minimal editing site construct for this site were shown to faithfully undergo RNA editing. These results demonstrate that Na(+) channel diversity in Drosophila is increased by RNA editing via a mechanism analogous to that described for transcripts encoding mammalian GluRs.

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Year:  2000        PMID: 10880477      PMCID: PMC1461140     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  43 in total

1.  Early-onset epilepsy and postnatal lethality associated with an editing-deficient GluR-B allele in mice.

Authors:  R Brusa; F Zimmermann; D S Koh; D Feldmeyer; P Gass; P H Seeburg; R Sprengel
Journal:  Science       Date:  1995-12-08       Impact factor: 47.728

Review 2.  RNA editing.

Authors:  L Simpson; R B Emeson
Journal:  Annu Rev Neurosci       Date:  1996       Impact factor: 12.449

3.  Phosphorylation of brain sodium channels in the I--II linker modulates channel function in Xenopus oocytes.

Authors:  R D Smith; A L Goldin
Journal:  J Neurosci       Date:  1996-03-15       Impact factor: 6.167

4.  RNA editing. The long and the short of it.

Authors:  R Benne
Journal:  Nature       Date:  1996-04-04       Impact factor: 49.962

5.  Deamination of mammalian glutamate receptor RNA by Xenopus dsRNA adenosine deaminase: similarities to in vivo RNA editing.

Authors:  S R Hurst; R F Hough; P J Aruscavage; B L Bass
Journal:  RNA       Date:  1995-12       Impact factor: 4.942

6.  Molecular evolution in Drosophila and the higher Diptera II. A time scale for fly evolution.

Authors:  S M Beverley; A C Wilson
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

7.  Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences.

Authors:  A Herb; M Higuchi; R Sprengel; P H Seeburg
Journal:  Proc Natl Acad Sci U S A       Date:  1996-03-05       Impact factor: 11.205

8.  cAMP-dependent phosphorylation of two sites in the alpha subunit of the cardiac sodium channel.

Authors:  B J Murphy; J Rogers; A P Perdichizzi; A A Colvin; W A Catterall
Journal:  J Biol Chem       Date:  1996-11-15       Impact factor: 5.157

9.  Intron of the mouse Hoxa-7 gene contains conserved homeodomain binding sites that can function as an enhancer element in Drosophila.

Authors:  T E Haerry; W J Gehring
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

10.  Structural requirements for RNA editing in glutamate receptor pre-mRNAs by recombinant double-stranded RNA adenosine deaminase.

Authors:  S Maas; T Melcher; A Herb; P H Seeburg; W Keller; S Krause; M Higuchi; M A O'Connell
Journal:  J Biol Chem       Date:  1996-05-24       Impact factor: 5.157

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  46 in total

Review 1.  RNA editing by adenosine deaminases that act on RNA.

Authors:  Brenda L Bass
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

2.  RNA editing and regulation of Drosophila 4f-rnp expression by sas-10 antisense readthrough mRNA transcripts.

Authors:  Nick T Peters; Justin A Rohrbach; Brian A Zalewski; Colleen M Byrkett; Jack C Vaughn
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

3.  RNA editing generates tissue-specific sodium channels with distinct gating properties.

Authors:  Weizhong Song; Zhiqi Liu; Jianguo Tan; Yoshiko Nomura; Ke Dong
Journal:  J Biol Chem       Date:  2004-05-10       Impact factor: 5.157

4.  Engineered alterations in RNA editing modulate complex behavior in Drosophila: regulatory diversity of adenosine deaminase acting on RNA (ADAR) targets.

Authors:  James E C Jepson; Yiannis A Savva; Chio Yokose; Arthur U Sugden; Asli Sahin; Robert A Reenan
Journal:  J Biol Chem       Date:  2010-11-15       Impact factor: 5.157

5.  Identification of alternative splicing regulators by RNA interference in Drosophila.

Authors:  Jung W Park; Katherine Parisky; Alicia M Celotto; Robert A Reenan; Brenton R Graveley
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-18       Impact factor: 11.205

6.  Ultraconserved elements in insect genomes: a highly conserved intronic sequence implicated in the control of homothorax mRNA splicing.

Authors:  Evgeny A Glazov; Michael Pheasant; Elizabeth A McGraw; Gill Bejerano; John S Mattick
Journal:  Genome Res       Date:  2005-05-17       Impact factor: 9.043

Review 7.  Insect sodium channels and insecticide resistance.

Authors:  Ke Dong
Journal:  Invert Neurosci       Date:  2007-01-06

8.  Large-scale detection and analysis of adenosine-to-inosine RNA editing during development in Plutella xylostella.

Authors:  Tao He; Wenjie Lei; Chang Ge; Peng Du; Li Wang; Fei Li
Journal:  Mol Genet Genomics       Date:  2014-12-10       Impact factor: 3.291

9.  CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain.

Authors:  H Poulsen; J Nilsson; C K Damgaard; J Egebjerg; J Kjems
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

10.  An ADAR that edits transcripts encoding ion channel subunits functions as a dimer.

Authors:  Angela Gallo; Liam P Keegan; Gillian M Ring; Mary A O'Connell
Journal:  EMBO J       Date:  2003-07-01       Impact factor: 11.598

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