Literature DB >> 22520751

Structure-based design of supercharged, highly thermoresistant antibodies.

Aleksandr E Miklos1, Christien Kluwe, Bryan S Der, Supriya Pai, Aroop Sircar, Randall A Hughes, Monica Berrondo, Jianqing Xu, Vlad Codrea, Patricia E Buckley, Alena M Calm, Heather S Welsh, Candice R Warner, Melody A Zacharko, James P Carney, Jeffrey J Gray, George Georgiou, Brian Kuhlman, Andrew D Ellington.   

Abstract

Mutation of surface residues to charged amino acids increases resistance to aggregation and can enable reversible unfolding. We have developed a protocol using the Rosetta computational design package that "supercharges" proteins while considering the energetic implications of each mutation. Using a homology model, a single-chain variable fragment antibody was designed that has a markedly enhanced resistance to thermal inactivation and displays an unanticipated ≈30-fold improvement in affinity. Such supercharged antibodies should prove useful for assays in resource-limited settings and for developing reagents with improved shelf lives.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22520751      PMCID: PMC5583727          DOI: 10.1016/j.chembiol.2012.01.018

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  22 in total

1.  Electrostatically optimized Ras-binding Ral guanine dissociation stimulator mutants increase the rate of association by stabilizing the encounter complex.

Authors:  C Kiel; T Selzer; Y Shaul; G Schreiber; C Herrmann
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-14       Impact factor: 11.205

2.  Control of translational repression by protein-protein interactions.

Authors:  D S Peabody; K R Ely
Journal:  Nucleic Acids Res       Date:  1992-04-11       Impact factor: 16.971

3.  Supercharging proteins can impart unusual resilience.

Authors:  Michael S Lawrence; Kevin J Phillips; David R Liu
Journal:  J Am Chem Soc       Date:  2007-08-01       Impact factor: 15.419

Review 4.  Protein aggregation: folding aggregates, inclusion bodies and amyloid.

Authors:  A L Fink
Journal:  Fold Des       Date:  1998

5.  Reliable cloning of functional antibody variable domains from hybridomas and spleen cell repertoires employing a reengineered phage display system.

Authors:  A Krebber; S Bornhauser; J Burmester; A Honegger; J Willuda; H R Bosshard; A Plückthun
Journal:  J Immunol Methods       Date:  1997-02-14       Impact factor: 2.303

6.  Efficient folding of proteins with multiple disulfide bonds in the Escherichia coli cytoplasm.

Authors:  P H Bessette; F Aslund; J Beckwith; G Georgiou
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

7.  Improving in vivo folding and stability of a single-chain Fv antibody fragment by loop grafting.

Authors:  S Jung; A Plückthun
Journal:  Protein Eng       Date:  1997-08

8.  Surface supercharged human enteropeptidase light chain shows improved solubility and refolding yield.

Authors:  Peter Simeonov; Renate Berger-Hoffmann; Ralf Hoffmann; Norbert Sträter; Thole Zuchner
Journal:  Protein Eng Des Sel       Date:  2010-11-16       Impact factor: 1.650

9.  Mammalian cell penetration, siRNA transfection, and DNA transfection by supercharged proteins.

Authors:  Brian R McNaughton; James J Cronican; David B Thompson; David R Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-23       Impact factor: 11.205

10.  RosettaAntibody: antibody variable region homology modeling server.

Authors:  Aroop Sircar; Eric T Kim; Jeffrey J Gray
Journal:  Nucleic Acids Res       Date:  2009-05-20       Impact factor: 16.971

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  56 in total

1.  Design and Optimization of Anti-amyloid Domain Antibodies Specific for β-Amyloid and Islet Amyloid Polypeptide.

Authors:  Christine C Lee; Mark C Julian; Kathryn E Tiller; Fanling Meng; Sarah E DuConge; Rehana Akter; Daniel P Raleigh; Peter M Tessier
Journal:  J Biol Chem       Date:  2015-11-24       Impact factor: 5.157

2.  Boosting protein stability with the computational design of β-sheet surfaces.

Authors:  Doo Nam Kim; Timothy M Jacobs; Brian Kuhlman
Journal:  Protein Sci       Date:  2016-01-13       Impact factor: 6.725

Review 3.  Advances in Antibody Design.

Authors:  Kathryn E Tiller; Peter M Tessier
Journal:  Annu Rev Biomed Eng       Date:  2015-08-14       Impact factor: 9.590

4.  SODA: prediction of protein solubility from disorder and aggregation propensity.

Authors:  Lisanna Paladin; Damiano Piovesan; Silvio C E Tosatto
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

5.  Antibody engineering and therapeutics, The Annual Meeting of the Antibody Society: December 8-12, 2013, Huntington Beach, CA.

Authors:  Juan Carlos Almagro; Gary L Gilliland; Felix Breden; Jamie K Scott; Devin Sok; Matthias Pauthner; Janice M Reichert; Gustavo Helguera; Raiees Andrabi; Robert Mabry; Mathieu Bléry; James E Voss; Juha Laurén; Lubna Abuqayyas; Stefan Barghorn; Eshel Ben-Jacob; James E Crowe; James S Huston; Stephen Albert Johnston; Eric Krauland; Fridtjof Lund-Johansen; Wayne A Marasco; Paul W H I Parren; Kai Y Xu
Journal:  MAbs       Date:  2014-03-03       Impact factor: 5.857

6.  Modulating non-native aggregation and electrostatic protein-protein interactions with computationally designed single-point mutations.

Authors:  C J O'Brien; M A Blanco; J A Costanzo; M Enterline; E J Fernandez; A S Robinson; C J Roberts
Journal:  Protein Eng Des Sel       Date:  2016-05-09       Impact factor: 1.650

7.  Biophysical characterization and molecular simulation of electrostatically driven self-association of a single-chain antibody.

Authors:  Christopher J O'Brien; Cesar Calero-Rubio; Vladimir I Razinkov; Anne S Robinson; Christopher J Roberts
Journal:  Protein Sci       Date:  2018-05-03       Impact factor: 6.725

8.  Increased Fab thermoresistance via VH-targeted directed evolution.

Authors:  Kevin C Entzminger; Jennifer L Johnson; Jeongmin Hyun; Raquel L Lieberman; Jennifer A Maynard
Journal:  Protein Eng Des Sel       Date:  2015-08-16       Impact factor: 1.650

Review 9.  Engineered Autonomous Human Variable Domains.

Authors:  Johan Nilvebrant; Peter M Tessier; Sachdev S Sidhu
Journal:  Curr Pharm Des       Date:  2016       Impact factor: 3.116

Review 10.  Scratching the Surface: Resurfacing Proteins to Endow New Properties and Function.

Authors:  Alex M Chapman; Brian R McNaughton
Journal:  Cell Chem Biol       Date:  2016-05-19       Impact factor: 8.116

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