Literature DB >> 22513998

Chemical reporters for monitoring RNA synthesis and poly(A) tail dynamics.

Markus Grammel1, Howard Hang, Nicholas K Conrad.   

Abstract

A versatile "clickable" nucleoside: Metabolic labeling of cells is useful in studying the dynamics of biological molecules. N(6) pA can be utilized by all three mammalian RNA polymerases, as well as poly(A) polymerase. Because of its alkyne modification, RNA labeled with N(6) pA can be visualized and purified by using click chemistry.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID： 22513998      PMCID： PMC3359407          DOI： 10.1002/cbic.201200091

Source DB:  PubMed          Journal:  Chembiochem        ISSN： 1439-4227            Impact factor:   3.164


  15 in total

1.  A chemical reporter for protein AMPylation.

Authors:  Markus Grammel; Phi Luong; Kim Orth; Howard C Hang
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

Review 2.  Control of poly(A) tail length.

Authors:  Christian R Eckmann; Christiane Rammelt; Elmar Wahle
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-11-17       Impact factor: 9.957

Review 3.  Polyadenylation and beyond: emerging roles for noncanonical poly(A) polymerases.

Authors:  Marie-Joëlle Schmidt; Chris J Norbury
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-05-06       Impact factor: 9.957

4.  Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover.

Authors:  Akio Yamashita; Tsung-Cheng Chang; Yukiko Yamashita; Wenmiao Zhu; Zhenping Zhong; Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Nat Struct Mol Biol       Date:  2005-11-13       Impact factor: 15.369

5.  Mutational analysis of a viral RNA element that counteracts rapid RNA decay by interaction with the polyadenylate tail.

Authors:  Nicholas K Conrad; Mei-Di Shu; Katherine E Uyhazi; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-11       Impact factor: 11.205

6.  Imaging of EdU, an alkyne-tagged cell proliferation probe, by Raman microscopy.

Authors:  Hiroyuki Yamakoshi; Kosuke Dodo; Masaya Okada; Jun Ando; Almar Palonpon; Katsumasa Fujita; Satoshi Kawata; Mikiko Sodeoka
Journal:  J Am Chem Soc       Date:  2011-03-28       Impact factor: 15.419

Review 7.  Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail.

Authors:  William F Marzluff; Eric J Wagner; Robert J Duronio
Journal:  Nat Rev Genet       Date:  2008-11       Impact factor: 53.242

8.  Loss of nuclear poly(A)-binding protein 1 causes defects in myogenesis and mRNA biogenesis.

Authors:  Luciano H Apponi; Sara W Leung; Kathryn R Williams; Sandro R Valentini; Anita H Corbett; Grace K Pavlath
Journal:  Hum Mol Genet       Date:  2009-12-24       Impact factor: 6.150

9.  Bringing chemistry to life.

Authors:  Michael Boyce; Carolyn R Bertozzi
Journal:  Nat Methods       Date:  2011-07-28       Impact factor: 28.547

10.  Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.

Authors:  Michal Rabani; Joshua Z Levin; Lin Fan; Xian Adiconis; Raktima Raychowdhury; Manuel Garber; Andreas Gnirke; Chad Nusbaum; Nir Hacohen; Nir Friedman; Ido Amit; Aviv Regev
Journal:  Nat Biotechnol       Date:  2011-04-24       Impact factor: 54.908
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  25 in total

1.  Posttranscriptional Suzuki-Miyaura Cross-Coupling Yields Labeled RNA for Conformational Analysis and Imaging.

Authors:  Manisha B Walunj; Seergazhi G Srivatsan
Journal:  Methods Mol Biol       Date:  2020

2.  Capture and Identification of RNA-binding Proteins by Using Click Chemistry-assisted RNA-interactome Capture (CARIC) Strategy.

Authors:  Rongbing Huang; Mengting Han; Liying Meng; Xing Chen
Journal:  J Vis Exp       Date:  2018-10-19       Impact factor: 1.355

3.  Synthesis and evaluation of an alkyne-modified ATP analog for enzymatic incorporation into RNA.

Authors:  Yuxuan Zheng; Peter A Beal
Journal:  Bioorg Med Chem Lett       Date:  2016-02-18       Impact factor: 2.823

4.  Chemical proteomics reveals ADP-ribosylation of small GTPases during oxidative stress.

Authors:  Nathan P Westcott; Joseph P Fernandez; Henrik Molina; Howard C Hang
Journal:  Nat Chem Biol       Date:  2017-01-16       Impact factor: 15.040

5.  Metabolic Incorporation of Azide Functionality into Cellular RNA.

Authors:  Sarah Nainar; Samantha Beasley; Michael Fazio; Miles Kubota; Nan Dai; Ivan R Corrêa; Robert C Spitale
Journal:  Chembiochem       Date:  2016-09-30       Impact factor: 3.164

6.  N6-Allyladenosine: A New Small Molecule for RNA Labeling Identified by Mutation Assay.

Authors:  Xiao Shu; Qing Dai; Tong Wu; Ian R Bothwell; Yanan Yue; Zezhou Zhang; Jie Cao; Qili Fei; Minkui Luo; Chuan He; Jianzhao Liu
Journal:  J Am Chem Soc       Date:  2017-11-15       Impact factor: 15.419

Review 7.  Covalent labeling of nucleic acids.

Authors:  Nils Klöcker; Florian P Weissenboeck; Andrea Rentmeister
Journal:  Chem Soc Rev       Date:  2020-10-21       Impact factor: 54.564

Review 8.  Chemical reporters for biological discovery.

Authors:  Markus Grammel; Howard C Hang
Journal:  Nat Chem Biol       Date:  2013-08       Impact factor: 15.040

9.  Bioorthogonal chemistry-based RNA labeling technologies: evolution and current state.

Authors:  Jerrin Thomas George; Seergazhi G Srivatsan
Journal:  Chem Commun (Camb)       Date:  2020-10-07       Impact factor: 6.222

10.  Transcriptome-wide discovery of coding and noncoding RNA-binding proteins.

Authors:  Rongbing Huang; Mengting Han; Liying Meng; Xing Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-10       Impact factor: 11.205
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