Literature DB >> 27595557

Metabolic Incorporation of Azide Functionality into Cellular RNA.

Sarah Nainar1, Samantha Beasley1, Michael Fazio1, Miles Kubota1, Nan Dai2, Ivan R Corrêa2, Robert C Spitale1,3.   

Abstract

Real-time tracking of RNA expression can provide insight into the mechanisms used to generate cellular diversity, as well as help determine the underlying causes of disease. Here we present the exploration of azide-modified nucleoside analogues and their ability to be metabolically incorporated into cellular RNA. We report robust incorporation of adenosine analogues bearing azide handles at both the 2'- and N6-positions; 5-methylazidouridine was not incorporated into cellular RNA. We further demonstrate selectivity of our adenosine analogues for transcription and polyadenylation. We predict that azidonucleosides will find widespread utility in examining RNA functions inside living cells, as well as in more complex systems such as tissues and living animals.
© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  RNA incorporation; azides; imaging; modified nucleosides; transcription

Mesh:

Substances:

Year:  2016        PMID: 27595557      PMCID: PMC5115926          DOI: 10.1002/cbic.201600300

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  25 in total

1.  Crystal structure of mammalian poly(A) polymerase in complex with an analog of ATP.

Authors:  G Martin; W Keller; S Doublié
Journal:  EMBO J       Date:  2000-08-15       Impact factor: 11.598

Review 2.  Unique features of long non-coding RNA biogenesis and function.

Authors:  Jeffrey J Quinn; Howard Y Chang
Journal:  Nat Rev Genet       Date:  2016-01       Impact factor: 53.242

3.  A modified dinucleotide for site-specific RNA-labelling by transcription priming and click chemistry.

Authors:  Ayan Samanta; André Krause; Andres Jäschke
Journal:  Chem Commun (Camb)       Date:  2014-02-09       Impact factor: 6.222

4.  Evaluation of the role of three candidate human kinases in the conversion of the hepatitis C virus inhibitor 2'-C-methyl-cytidine to its 5'-monophosphate metabolite.

Authors:  Nina L Golitsina; Francis T Danehy; Ross Fellows; Erika Cretton-Scott; David N Standring
Journal:  Antiviral Res       Date:  2009-10-31       Impact factor: 5.970

5.  Tracking Distinct RNA Populations Using Efficient and Reversible Covalent Chemistry.

Authors:  Erin E Duffy; Michael Rutenberg-Schoenberg; Catherine D Stark; Robert R Kitchen; Mark B Gerstein; Matthew D Simon
Journal:  Mol Cell       Date:  2015-09-03       Impact factor: 17.970

6.  A strain-promoted [3 + 2] azide-alkyne cycloaddition for covalent modification of biomolecules in living systems.

Authors:  Nicholas J Agard; Jennifer A Prescher; Carolyn R Bertozzi
Journal:  J Am Chem Soc       Date:  2004-11-24       Impact factor: 15.419

7.  2'-Azido RNA, a versatile tool for chemical biology: synthesis, X-ray structure, siRNA applications, click labeling.

Authors:  Katja Fauster; Markus Hartl; Tobias Santner; Michaela Aigner; Christoph Kreutz; Klaus Bister; Eric Ennifar; Ronald Micura
Journal:  ACS Chem Biol       Date:  2012-01-24       Impact factor: 5.100

8.  2-Selenouridine triphosphate synthesis and Se-RNA transcription.

Authors:  Huiyan Sun; Sibo Jiang; Julianne Caton-Williams; Hehua Liu; Zhen Huang
Journal:  RNA       Date:  2013-07-25       Impact factor: 4.942

9.  mRIN for direct assessment of genome-wide and gene-specific mRNA integrity from large-scale RNA-sequencing data.

Authors:  Huijuan Feng; Xuegong Zhang; Chaolin Zhang
Journal:  Nat Commun       Date:  2015-08-03       Impact factor: 14.919

10.  RNA-seq: impact of RNA degradation on transcript quantification.

Authors:  Irene Gallego Romero; Athma A Pai; Jenny Tung; Yoav Gilad
Journal:  BMC Biol       Date:  2014-05-30       Impact factor: 7.431

View more
  20 in total

1.  Capture and Identification of RNA-binding Proteins by Using Click Chemistry-assisted RNA-interactome Capture (CARIC) Strategy.

Authors:  Rongbing Huang; Mengting Han; Liying Meng; Xing Chen
Journal:  J Vis Exp       Date:  2018-10-19       Impact factor: 1.355

2.  RNA Targeting in Acute Myeloid Leukemia.

Authors:  Alessandra Messikommer; Katja Seipel; Stephen Byrne; Peter J M Valk; Thomas Pabst; Nathan W Luedtke
Journal:  ACS Pharmacol Transl Sci       Date:  2020-10-12

3.  Expanding the Scope of RNA Metabolic Labeling with Vinyl Nucleosides and Inverse Electron-Demand Diels-Alder Chemistry.

Authors:  Miles Kubota; Sarah Nainar; Shane M Parker; Whitney England; Filipp Furche; Robert C Spitale
Journal:  ACS Chem Biol       Date:  2019-07-25       Impact factor: 5.100

4.  Spatially Restricting Bioorthogonal Nucleoside Biosynthesis Enables Selective Metabolic Labeling of the Mitochondrial Transcriptome.

Authors:  Kim Nguyen; Mahima B Aggarwal; Chao Feng; Gabriela Balderrama; Michael Fazio; Ali Mortazavi; Robert C Spitale
Journal:  ACS Chem Biol       Date:  2018-05-17       Impact factor: 5.100

5.  Photo-controlled cell-specific metabolic labeling of RNA.

Authors:  C Feng; Y Li; R C Spitale
Journal:  Org Biomol Chem       Date:  2017-06-21       Impact factor: 3.876

Review 6.  Covalent labeling of nucleic acids.

Authors:  Nils Klöcker; Florian P Weissenboeck; Andrea Rentmeister
Journal:  Chem Soc Rev       Date:  2020-10-21       Impact factor: 54.564

7.  Bioorthogonal chemistry-based RNA labeling technologies: evolution and current state.

Authors:  Jerrin Thomas George; Seergazhi G Srivatsan
Journal:  Chem Commun (Camb)       Date:  2020-10-07       Impact factor: 6.222

8.  A Tool for the Import of Natural and Unnatural Nucleoside Triphosphates into Bacteria.

Authors:  Aaron W Feldman; Emil C Fischer; Michael P Ledbetter; Jen-Yu Liao; John C Chaput; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2018-01-17       Impact factor: 15.419

9.  Transcriptome-wide discovery of coding and noncoding RNA-binding proteins.

Authors:  Rongbing Huang; Mengting Han; Liying Meng; Xing Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-10       Impact factor: 11.205

10.  Cell- and Polymerase-Selective Metabolic Labeling of Cellular RNA with 2'-Azidocytidine.

Authors:  Danyang Wang; Yu Zhang; Ralph E Kleiner
Journal:  J Am Chem Soc       Date:  2020-08-14       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.