Literature DB >> 21942216

A chemical reporter for protein AMPylation.

Markus Grammel1, Phi Luong, Kim Orth, Howard C Hang.   

Abstract

Protein AMPylation is an emerging post-translational modification, which plays key roles in bacterial pathogenesis and cell biology. Enzymes with AMPylation activity, referred to as AMPylators, have been identified in several bacterial pathogens and eukaryotes. To facilitate the study of this unique modification, we developed an alkynyl chemical reporter for detection and identification of protein AMPylation substrates. Covalent functionalization of AMPylation substrates with the alkynyl reporter in lieu of adenylyl 5'-monophosphate (AMP) allows their subsequent bioorthogonal ligation with azide-fluorescent dyes or affinity enrichment tags. We show that this chemical reporter is transferred by a range of AMPylators onto their cognate protein substrates and allows rapid detection and identification of AMPylated substrates.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21942216      PMCID: PMC3246509          DOI: 10.1021/ja205137d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  Kinetic and structural insights into the mechanism of AMPylation by VopS Fic domain.

Authors:  Phi Luong; Lisa N Kinch; Chad A Brautigam; Nick V Grishin; Diana R Tomchick; Kim Orth
Journal:  J Biol Chem       Date:  2010-04-21       Impact factor: 5.157

2.  Comparative analysis of cleavable azobenzene-based affinity tags for bioorthogonal chemical proteomics.

Authors:  Yu-Ying Yang; Markus Grammel; Anuradha S Raghavan; Guillaume Charron; Howard C Hang
Journal:  Chem Biol       Date:  2010-11-24

3.  Regulation of glutamine synthetase. 8. ATP: glutamine synthetase adenylyltransferase, an enzyme that catalyzes alterations in the regulatory properties of glutamine synthetase.

Authors:  H S Kingdon; B M Shapiro; E R Stadtman
Journal:  Proc Natl Acad Sci U S A       Date:  1967-10       Impact factor: 11.205

4.  Characterization of AMPylation on threonine, serine, and tyrosine using mass spectrometry.

Authors:  Yan Li; Rowaida Al-Eryani; Melanie L Yarbrough; Kim Orth; Haydn L Ball
Journal:  J Am Soc Mass Spectrom       Date:  2011-02-24       Impact factor: 3.109

5.  Robust fluorescent detection of protein fatty-acylation with chemical reporters.

Authors:  Guillaume Charron; Mingzi M Zhang; Jacob S Yount; John Wilson; Anuradha S Raghavan; Eliah Shamir; Howard C Hang
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

6.  Epsilon-adenylylated glutamine synthetase: an internal fluorescence probe for enzyme conformation.

Authors:  P B Chock; C Y Huang; R B Timmons; E R Stadtman
Journal:  Proc Natl Acad Sci U S A       Date:  1973-11       Impact factor: 11.205

7.  AMPylation of Rho GTPases by Vibrio VopS disrupts effector binding and downstream signaling.

Authors:  Melanie L Yarbrough; Yan Li; Lisa N Kinch; Nick V Grishin; Haydn L Ball; Kim Orth
Journal:  Science       Date:  2008-11-27       Impact factor: 47.728

8.  The fic domain: regulation of cell signaling by adenylylation.

Authors:  Carolyn A Worby; Seema Mattoo; Robert P Kruger; Lynette B Corbeil; Antonius Koller; Juan C Mendez; Bereket Zekarias; Cheri Lazar; Jack E Dixon
Journal:  Mol Cell       Date:  2009-04-10       Impact factor: 17.970

9.  Legionella pneumophila SidD is a deAMPylase that modifies Rab1.

Authors:  Yunhao Tan; Zhao-Qing Luo
Journal:  Nature       Date:  2011-07-06       Impact factor: 49.962

10.  Bioorthogonal chemistry: fishing for selectivity in a sea of functionality.

Authors:  Ellen M Sletten; Carolyn R Bertozzi
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

View more
  33 in total

Review 1.  Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface.

Authors:  M Sloan Siegrist; Benjamin M Swarts; Douglas M Fox; Shion An Lim; Carolyn R Bertozzi
Journal:  FEMS Microbiol Rev       Date:  2015-01-23       Impact factor: 16.408

Review 2.  Structure and function of Fic proteins.

Authors:  Craig R Roy; Jacqueline Cherfils
Journal:  Nat Rev Microbiol       Date:  2015-08-24       Impact factor: 60.633

3.  Copper-catalyzed azide-alkyne cycloaddition (click chemistry)-based detection of global pathogen-host AMPylation on self-assembled human protein microarrays.

Authors:  Xiaobo Yu; Andrew R Woolery; Phi Luong; Yi Heng Hao; Markus Grammel; Nathan Westcott; Jin Park; Jie Wang; Xiaofang Bian; Gokhan Demirkan; Howard C Hang; Kim Orth; Joshua LaBaer
Journal:  Mol Cell Proteomics       Date:  2014-07-29       Impact factor: 5.911

4.  Single-cell in situ imaging of palmitoylation in fatty-acylated proteins.

Authors:  Xinxin Gao; Rami N Hannoush
Journal:  Nat Protoc       Date:  2014-10-09       Impact factor: 13.491

5.  Chemical proteomics reveals ADP-ribosylation of small GTPases during oxidative stress.

Authors:  Nathan P Westcott; Joseph P Fernandez; Henrik Molina; Howard C Hang
Journal:  Nat Chem Biol       Date:  2017-01-16       Impact factor: 15.040

Review 6.  Enzymes Involved in AMPylation and deAMPylation.

Authors:  Amanda K Casey; Kim Orth
Journal:  Chem Rev       Date:  2017-08-18       Impact factor: 60.622

7.  A metabolic labeling method detects m6A transcriptome-wide at single base resolution.

Authors:  Xiao Shu; Jie Cao; Mohan Cheng; Siying Xiang; Minsong Gao; Ting Li; Xiner Ying; Fengqin Wang; Yanan Yue; Zhike Lu; Qing Dai; Xiaolong Cui; Lijia Ma; Yizhen Wang; Chuan He; Xinhua Feng; Jianzhao Liu
Journal:  Nat Chem Biol       Date:  2020-04-27       Impact factor: 15.040

8.  Host-pathogen interaction profiling using self-assembling human protein arrays.

Authors:  Xiaobo Yu; Kimberly B Decker; Kristi Barker; M Ramona Neunuebel; Justin Saul; Morgan Graves; Nathan Westcott; Howard Hang; Joshua LaBaer; Ji Qiu; Matthias P Machner
Journal:  J Proteome Res       Date:  2015-03-18       Impact factor: 4.466

Review 9.  Chemical reporters for biological discovery.

Authors:  Markus Grammel; Howard C Hang
Journal:  Nat Chem Biol       Date:  2013-08       Impact factor: 15.040

10.  Se-adenosyl-L-selenomethionine cofactor analogue as a reporter of protein methylation.

Authors:  Ian R Bothwell; Kabirul Islam; Yuling Chen; Weihong Zheng; Gil Blum; Haiteng Deng; Minkui Luo
Journal:  J Am Chem Soc       Date:  2012-09-04       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.