Literature DB >> 22493488

Pre-steady-state kinetics for hydrolysis of insoluble cellulose by cellobiohydrolase Cel7A.

Nicolaj Cruys-Bagger1, Jens Elmerdahl, Eigil Praestgaard, Hirosuke Tatsumi, Nikolaj Spodsberg, Kim Borch, Peter Westh.   

Abstract

The transient kinetic behavior of enzyme reactions prior to the establishment of steady state is a major source of mechanistic information, yet this approach has not been utilized for cellulases acting on their natural substrate, insoluble cellulose. Here, we elucidate the pre-steady-state regime for the exo-acting cellulase Cel7A using amperometric biosensors and an explicit model for processive hydrolysis of cellulose. This analysis allows the identification of a pseudo-steady-state period and quantification of a processivity number as well as rate constants for the formation of a threaded enzyme complex, processive hydrolysis, and dissociation, respectively. These kinetic parameters elucidate limiting factors in the cellulolytic process. We concluded, for example, that Cel7A cleaves about four glycosidic bonds/s during processive hydrolysis. However, the results suggest that stalling the processive movement and low off-rates result in a specific activity at pseudo-steady state that is 10-25-fold lower. It follows that the dissociation of the enzyme-substrate complex (half-time of ~30 s) is rate-limiting for the investigated system. We suggest that this approach can be useful in attempts to unveil fundamental reasons for the distinctive variability in hydrolytic activity found in different cellulase-substrate systems.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22493488      PMCID: PMC3365755          DOI: 10.1074/jbc.M111.334946

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  34 in total

1.  An enzymatic signal amplification system for calorimetric studies of cellobiohydrolases.

Authors:  Leigh Murphy; Martin J Baumann; Kim Borch; Matt Sweeney; Peter Westh
Journal:  Anal Biochem       Date:  2010-05-10       Impact factor: 3.365

2.  Mechanism of initial rapid rate retardation in cellobiohydrolase catalyzed cellulose hydrolysis.

Authors:  Jürgen Jalak; Priit Väljamäe
Journal:  Biotechnol Bioeng       Date:  2010-08-15       Impact factor: 4.530

Review 3.  Toward an aggregated understanding of enzymatic hydrolysis of cellulose: noncomplexed cellulase systems.

Authors:  Yi-Heng Percival Zhang; Lee R Lynd
Journal:  Biotechnol Bioeng       Date:  2004-12-30       Impact factor: 4.530

4.  A kinetic model for the burst phase of processive cellulases.

Authors:  Eigil Praestgaard; Jens Elmerdahl; Leigh Murphy; Søren Nymand; K C McFarland; Kim Borch; Peter Westh
Journal:  FEBS J       Date:  2011-03-28       Impact factor: 5.542

5.  A comparative study of activity and apparent inhibition of fungal β-glucosidases.

Authors:  Christina Bohlin; Søren Nymand Olsen; Marc Dominique Morant; Shamkant Patkar; Kim Borch; Peter Westh
Journal:  Biotechnol Bioeng       Date:  2010-12-15       Impact factor: 4.530

6.  4-Methyl-7-thioumbelliferyl-beta-D-cellobioside: a fluorescent, nonhydrolyzable substrate analogue for cellulases.

Authors:  Brian K Barr; Ronald J Holewinski
Journal:  Biochemistry       Date:  2002-04-02       Impact factor: 3.162

7.  Cellulose hydrolysis by the cellulases from Trichoderma reesei: adsorptions of two cellobiohydrolases, two endocellulases and their core proteins on filter paper and their relation to hydrolysis.

Authors:  B Nidetzky; W Steiner; M Claeyssens
Journal:  Biochem J       Date:  1994-11-01       Impact factor: 3.857

8.  Determination of the number-average degree of polymerization of cellodextrins and cellulose with application to enzymatic hydrolysis.

Authors:  Y-H Percival Zhang; Lee R Lynd
Journal:  Biomacromolecules       Date:  2005 May-Jun       Impact factor: 6.988

9.  Mechanisms of cellulases and xylanases: a detailed kinetic study of the exo-beta-1,4-glycanase from Cellulomonas fimi.

Authors:  D Tull; S G Withers
Journal:  Biochemistry       Date:  1994-05-24       Impact factor: 3.162

10.  The initial kinetics of hydrolysis by cellobiohydrolases I and II is consistent with a cellulose surface-erosion model.

Authors:  P Väljamäe; V Sild; G Pettersson; G Johansson
Journal:  Eur J Biochem       Date:  1998-04-15
View more
  38 in total

1.  Slow Off-rates and Strong Product Binding Are Required for Processivity and Efficient Degradation of Recalcitrant Chitin by Family 18 Chitinases.

Authors:  Mihhail Kurašin; Silja Kuusk; Piret Kuusk; Morten Sørlie; Priit Väljamäe
Journal:  J Biol Chem       Date:  2015-10-14       Impact factor: 5.157

2.  Binding and movement of individual Cel7A cellobiohydrolases on crystalline cellulose surfaces revealed by single-molecule fluorescence imaging.

Authors:  Jaemyeong Jung; Anurag Sethi; Tiziano Gaiotto; Jason J Han; Tina Jeoh; Sandrasegaram Gnanakaran; Peter M Goodwin
Journal:  J Biol Chem       Date:  2013-07-01       Impact factor: 5.157

3.  Systems-level modeling with molecular resolution elucidates the rate-limiting mechanisms of cellulose decomposition by cellobiohydrolases.

Authors:  Barry Z Shang; Rakwoo Chang; Jhih-Wei Chu
Journal:  J Biol Chem       Date:  2013-08-15       Impact factor: 5.157

4.  A distinct model of synergism between a processive endocellulase (TfCel9A) and an exocellulase (TfCel48A) from Thermobifida fusca.

Authors:  Maxim Kostylev; David Wilson
Journal:  Appl Environ Microbiol       Date:  2013-10-25       Impact factor: 4.792

5.  Temperature Effects on Kinetic Parameters and Substrate Affinity of Cel7A Cellobiohydrolases.

Authors:  Trine Holst Sørensen; Nicolaj Cruys-Bagger; Michael Skovbo Windahl; Silke Flindt Badino; Kim Borch; Peter Westh
Journal:  J Biol Chem       Date:  2015-07-16       Impact factor: 5.157

6.  Systematic deletions in the cellobiohydrolase (CBH) Cel7A from the fungus Trichoderma reesei reveal flexible loops critical for CBH activity.

Authors:  Corinna Schiano-di-Cola; Nanna Røjel; Kenneth Jensen; Jeppe Kari; Trine Holst Sørensen; Kim Borch; Peter Westh
Journal:  J Biol Chem       Date:  2018-12-11       Impact factor: 5.157

7.  Endo-exo synergism in cellulose hydrolysis revisited.

Authors:  Jürgen Jalak; Mihhail Kurašin; Hele Teugjas; Priit Väljamäe
Journal:  J Biol Chem       Date:  2012-06-25       Impact factor: 5.157

8.  Substrate binding in the processive cellulase Cel7A: Transition state of complexation and roles of conserved tryptophan residues.

Authors:  Nanna Røjel; Jeppe Kari; Trine Holst Sørensen; Silke F Badino; J Preben Morth; Kay Schaller; Ana Mafalda Cavaleiro; Kim Borch; Peter Westh
Journal:  J Biol Chem       Date:  2019-12-17       Impact factor: 5.157

9.  Two-parameter kinetic model based on a time-dependent activity coefficient accurately describes enzymatic cellulose digestion.

Authors:  Maxim Kostylev; David Wilson
Journal:  Biochemistry       Date:  2013-07-24       Impact factor: 3.162

10.  The predominant molecular state of bound enzyme determines the strength and type of product inhibition in the hydrolysis of recalcitrant polysaccharides by processive enzymes.

Authors:  Silja Kuusk; Morten Sørlie; Priit Väljamäe
Journal:  J Biol Chem       Date:  2015-03-12       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.