Literature DB >> 22733813

Endo-exo synergism in cellulose hydrolysis revisited.

Jürgen Jalak1, Mihhail Kurašin, Hele Teugjas, Priit Väljamäe.   

Abstract

Synergistic cooperation of different enzymes is a prerequisite for efficient degradation of cellulose. The conventional mechanistic interpretation of the synergism between randomly acting endoglucanases (EGs) and chain end-specific processive cellobiohydrolases (CBHs) is that EG-generated new chain ends on cellulose surface serve as starting points for CBHs. Here we studied the hydrolysis of bacterial cellulose (BC) by CBH TrCel7A and EG TrCel5A from Trichoderma reesei under both single-turnover and "steady state" conditions. Unaccountable by conventional interpretation, the presence of EG increased the rate constant of TrCel7A-catalyzed hydrolysis of BC in steady state. At optimal enzyme/substrate ratios, the "steady state" rate of synergistic hydrolysis became limited by the velocity of processive movement of TrCel7A on BC. A processivity value of 66 ± 7 cellobiose units measured for TrCel7A on (14)C-labeled BC was close to the leveling off degree of polymerization of BC, suggesting that TrCel7A cannot pass through the amorphous regions on BC and stalls. We propose a mechanism of endo-exo synergism whereby the degradation of amorphous regions by EG avoids the stalling of TrCel7A and leads to its accelerated recruitment. Hydrolysis of pretreated wheat straw suggested that this mechanism of synergism is operative also in the degradation of lignocellulose. Although both mechanisms of synergism are used in parallel, the contribution of conventional mechanism is significant only at high enzyme/substrate ratios.

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Year:  2012        PMID: 22733813      PMCID: PMC3436550          DOI: 10.1074/jbc.M112.381624

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  60 in total

1.  Optimized mixtures of recombinant Humicola insolens cellulases for the biodegradation of crystalline cellulose.

Authors:  C Boisset; C Pétrequin; H Chanzy; B Henrissat; M Schülein
Journal:  Biotechnol Bioeng       Date:  2001-02-05       Impact factor: 4.530

Review 2.  Processive and nonprocessive cellulases for biofuel production--lessons from bacterial genomes and structural analysis.

Authors:  David B Wilson
Journal:  Appl Microbiol Biotechnol       Date:  2011-11-24       Impact factor: 4.813

3.  Product binding varies dramatically between processive and nonprocessive cellulase enzymes.

Authors:  Lintao Bu; Mark R Nimlos; Michael R Shirts; Jerry Ståhlberg; Michael E Himmel; Michael F Crowley; Gregg T Beckham
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

4.  Mechanism of initial rapid rate retardation in cellobiohydrolase catalyzed cellulose hydrolysis.

Authors:  Jürgen Jalak; Priit Väljamäe
Journal:  Biotechnol Bioeng       Date:  2010-08-15       Impact factor: 4.530

Review 5.  Toward an aggregated understanding of enzymatic hydrolysis of cellulose: noncomplexed cellulase systems.

Authors:  Yi-Heng Percival Zhang; Lee R Lynd
Journal:  Biotechnol Bioeng       Date:  2004-12-30       Impact factor: 4.530

6.  The biological degradation of soluble cellulose derivatives and its relationship to the mechanism of cellulose hydrolysis.

Authors:  E T REESE; R G H SIU; H S LEVINSON
Journal:  J Bacteriol       Date:  1950-04       Impact factor: 3.490

7.  N-glycoform diversity of cellobiohydrolase I from Penicillium decumbens and synergism of nonhydrolytic glycoform in cellulose degradation.

Authors:  Le Gao; Feng Gao; Lushan Wang; Cunliang Geng; Lianli Chi; Jian Zhao; Yinbo Qu
Journal:  J Biol Chem       Date:  2012-03-15       Impact factor: 5.157

Review 8.  Deconstruction of lignocellulosic biomass to fuels and chemicals.

Authors:  Shishir P S Chundawat; Gregg T Beckham; Michael E Himmel; Bruce E Dale
Journal:  Annu Rev Chem Biomol Eng       Date:  2011       Impact factor: 11.059

9.  Role of the interdomain linker peptide of Trichoderma reesei cellobiohydrolase I in its interaction with crystalline cellulose.

Authors:  M Srisodsuk; T Reinikainen; M Penttilä; T T Teeri
Journal:  J Biol Chem       Date:  1993-10-05       Impact factor: 5.157

10.  Cellulose hydrolysis by the cellulases from Trichoderma reesei: a new model for synergistic interaction.

Authors:  B Nidetzky; W Steiner; M Hayn; M Claeyssens
Journal:  Biochem J       Date:  1994-03-15       Impact factor: 3.857

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  46 in total

1.  Slow Off-rates and Strong Product Binding Are Required for Processivity and Efficient Degradation of Recalcitrant Chitin by Family 18 Chitinases.

Authors:  Mihhail Kurašin; Silja Kuusk; Piret Kuusk; Morten Sørlie; Priit Väljamäe
Journal:  J Biol Chem       Date:  2015-10-14       Impact factor: 5.157

2.  Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance.

Authors:  Marcelo Kern; John E McGeehan; Simon D Streeter; Richard N A Martin; Katrin Besser; Luisa Elias; Will Eborall; Graham P Malyon; Christina M Payne; Michael E Himmel; Kirk Schnorr; Gregg T Beckham; Simon M Cragg; Neil C Bruce; Simon J McQueen-Mason
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-03       Impact factor: 11.205

3.  Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.

Authors:  Gregory Arnal; Peter J Stogios; Jathavan Asohan; Mohamed A Attia; Tatiana Skarina; Alexander Holm Viborg; Bernard Henrissat; Alexei Savchenko; Harry Brumer
Journal:  J Biol Chem       Date:  2019-07-19       Impact factor: 5.157

4.  Systematic deletions in the cellobiohydrolase (CBH) Cel7A from the fungus Trichoderma reesei reveal flexible loops critical for CBH activity.

Authors:  Corinna Schiano-di-Cola; Nanna Røjel; Kenneth Jensen; Jeppe Kari; Trine Holst Sørensen; Kim Borch; Peter Westh
Journal:  J Biol Chem       Date:  2018-12-11       Impact factor: 5.157

5.  The carbohydrate-binding module and linker of a modular lytic polysaccharide monooxygenase promote localized cellulose oxidation.

Authors:  Gaston Courtade; Zarah Forsberg; Ellinor B Heggset; Vincent G H Eijsink; Finn L Aachmann
Journal:  J Biol Chem       Date:  2018-07-02       Impact factor: 5.157

6.  Initial recognition of a cellodextrin chain in the cellulose-binding tunnel may affect cellobiohydrolase directional specificity.

Authors:  Pavan K Ghattyvenkatakrishna; Emal M Alekozai; Gregg T Beckham; Roland Schulz; Michael F Crowley; Edward C Uberbacher; Xiaolin Cheng
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

7.  Single-molecule imaging analysis of elementary reaction steps of Trichoderma reesei cellobiohydrolase I (Cel7A) hydrolyzing crystalline cellulose Iα and IIII.

Authors:  Yusuke Shibafuji; Akihiko Nakamura; Takayuki Uchihashi; Naohisa Sugimoto; Shingo Fukuda; Hiroki Watanabe; Masahiro Samejima; Toshio Ando; Hiroyuki Noji; Anu Koivula; Kiyohiko Igarashi; Ryota Iino
Journal:  J Biol Chem       Date:  2014-04-01       Impact factor: 5.157

8.  Integration of bacterial lytic polysaccharide monooxygenases into designer cellulosomes promotes enhanced cellulose degradation.

Authors:  Yonathan Arfi; Melina Shamshoum; Ilana Rogachev; Yoav Peleg; Edward A Bayer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

9.  Systems analysis of the glycoside hydrolase family 18 enzymes from Cellvibrio japonicus characterizes essential chitin degradation functions.

Authors:  Estela C Monge; Tina R Tuveng; Gustav Vaaje-Kolstad; Vincent G H Eijsink; Jeffrey G Gardner
Journal:  J Biol Chem       Date:  2018-01-24       Impact factor: 5.157

10.  The predominant molecular state of bound enzyme determines the strength and type of product inhibition in the hydrolysis of recalcitrant polysaccharides by processive enzymes.

Authors:  Silja Kuusk; Morten Sørlie; Priit Väljamäe
Journal:  J Biol Chem       Date:  2015-03-12       Impact factor: 5.157

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