Literature DB >> 22491085

Research guidelines in the era of large-scale collaborations: an analysis of Genome-wide Association Study Consortia.

Melissa A Austin1, Marilyn S Hair, Stephanie M Fullerton.   

Abstract

Scientific research has shifted from studies conducted by single investigators to the creation of large consortia. Genetic epidemiologists, for example, now collaborate extensively for genome-wide association studies (GWAS). The effect has been a stream of confirmed disease-gene associations. However, effects on human subjects oversight, data-sharing, publication and authorship practices, research organization and productivity, and intellectual property remain to be examined. The aim of this analysis was to identify all research consortia that had published the results of a GWAS analysis since 2005, characterize them, determine which have publicly accessible guidelines for research practices, and summarize the policies in these guidelines. A review of the National Human Genome Research Institute's Catalog of Published Genome-Wide Association Studies identified 55 GWAS consortia as of April 1, 2011. These consortia were comprised of individual investigators, research centers, studies, or other consortia and studied 48 different diseases or traits. Only 14 (25%) were found to have publicly accessible research guidelines on consortia websites. The available guidelines provide information on organization, governance, and research protocols; half address institutional review board approval. Details of publication, authorship, data-sharing, and intellectual property vary considerably. Wider access to consortia guidelines is needed to establish appropriate research standards with broad applicability to emerging forms of large-scale collaboration.

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Year:  2012        PMID: 22491085      PMCID: PMC3339312          DOI: 10.1093/aje/kwr441

Source DB:  PubMed          Journal:  Am J Epidemiol        ISSN: 0002-9262            Impact factor:   4.897


  14 in total

1.  Design of the Coronary ARtery DIsease Genome-Wide Replication And Meta-Analysis (CARDIoGRAM) Study: A Genome-wide association meta-analysis involving more than 22 000 cases and 60 000 controls.

Authors:  Michael Preuss; Inke R König; John R Thompson; Jeanette Erdmann; Devin Absher; Themistocles L Assimes; Stefan Blankenberg; Eric Boerwinkle; Li Chen; L Adrienne Cupples; Alistair S Hall; Eran Halperin; Christian Hengstenberg; Hilma Holm; Reijo Laaksonen; Mingyao Li; Winfried März; Ruth McPherson; Kiran Musunuru; Christopher P Nelson; Mary Susan Burnett; Stephen E Epstein; Christopher J O'Donnell; Thomas Quertermous; Daniel J Rader; Robert Roberts; Arne Schillert; Kari Stefansson; Alexandre F R Stewart; Gudmar Thorleifsson; Benjamin F Voight; George A Wells; Andreas Ziegler; Sekar Kathiresan; Muredach P Reilly; Nilesh J Samani; Heribert Schunkert
Journal:  Circ Cardiovasc Genet       Date:  2010-10-05

Review 2.  Genomewide association studies and assessment of the risk of disease.

Authors:  Teri A Manolio
Journal:  N Engl J Med       Date:  2010-07-08       Impact factor: 91.245

3.  Phenotype harmonization and cross-study collaboration in GWAS consortia: the GENEVA experience.

Authors:  Siiri N Bennett; Neil Caporaso; Annette L Fitzpatrick; Arpana Agrawal; Kathleen Barnes; Heather A Boyd; Marilyn C Cornelis; Nadia N Hansel; Gerardo Heiss; John A Heit; Jae Hee Kang; Steven J Kittner; Peter Kraft; William Lowe; Mary L Marazita; Kristine R Monroe; Louis R Pasquale; Erin M Ramos; Rob M van Dam; Jenna Udren; Kayleen Williams
Journal:  Genet Epidemiol       Date:  2011-01-31       Impact factor: 2.135

4.  How to interpret a genome-wide association study.

Authors:  Thomas A Pearson; Teri A Manolio
Journal:  JAMA       Date:  2008-03-19       Impact factor: 56.272

5.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

6.  Extending the Mertonian Norms: Scientists' Subscription to Norms of Research.

Authors:  Melissa S Anderson; Emily A Ronning; Raymond Devries; Brian C Martinson
Journal:  J Higher Educ       Date:  2010-05-01

7.  Genome-wide association studies, field synopses, and the development of the knowledge base on genetic variation and human diseases.

Authors:  Muin J Khoury; Lars Bertram; Paolo Boffetta; Adam S Butterworth; Stephen J Chanock; Siobhan M Dolan; Isabel Fortier; Montserrat Garcia-Closas; Marta Gwinn; Julian P T Higgins; A Cecile J W Janssens; James Ostell; Ryan P Owen; Roberta A Pagon; Timothy R Rebbeck; Nathaniel Rothman; Jonine L Bernstein; Paul R Burton; Harry Campbell; Anand Chockalingam; Helena Furberg; Julian Little; Thomas R O'Brien; Daniela Seminara; Paolo Vineis; Deborah M Winn; Wei Yu; John P A Ioannidis
Journal:  Am J Epidemiol       Date:  2009-06-04       Impact factor: 4.897

8.  Moving the science of team science forward: collaboration and creativity.

Authors:  Kara L Hall; Annie X Feng; Richard P Moser; Daniel Stokols; Brandie K Taylor
Journal:  Am J Prev Med       Date:  2008-08       Impact factor: 5.043

9.  Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from 5 cohorts.

Authors:  Bruce M Psaty; Christopher J O'Donnell; Vilmundur Gudnason; Kathryn L Lunetta; Aaron R Folsom; Jerome I Rotter; André G Uitterlinden; Tamara B Harris; Jacqueline C M Witteman; Eric Boerwinkle
Journal:  Circ Cardiovasc Genet       Date:  2009-02

10.  Confronting real time ethical, legal, and social issues in the Electronic Medical Records and Genomics (eMERGE) Consortium.

Authors:  Ellen Wright Clayton; Maureen Smith; Stephanie M Fullerton; Wylie Burke; Catherine A McCarty; Barbara A Koenig; Amy L McGuire; Laura M Beskow; Lynn Dressler; Amy A Lemke; Erin M Ramos; Laura Lyman Rodriguez
Journal:  Genet Med       Date:  2010-10       Impact factor: 8.822

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  9 in total

1.  Trouble in Paradise: Problems in Academic Research Co-authoring.

Authors:  Barry Bozeman; Jan Youtie
Journal:  Sci Eng Ethics       Date:  2015-11-14       Impact factor: 3.525

2.  Reproducibility of prediction models in health services research.

Authors:  Lazaros Belbasis; Orestis A Panagiotou
Journal:  BMC Res Notes       Date:  2022-06-11

Review 3.  Collaborative cancer epidemiology in the 21st century: the model of cancer consortia.

Authors:  Michael R Burgio; John P A Ioannidis; Brett M Kaminski; Eric Derycke; Scott Rogers; Muin J Khoury; Daniela Seminara
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2013-09-17       Impact factor: 4.254

Review 4.  Scanning the horizon: towards transparent and reproducible neuroimaging research.

Authors:  Russell A Poldrack; Chris I Baker; Joke Durnez; Krzysztof J Gorgolewski; Paul M Matthews; Marcus R Munafò; Thomas E Nichols; Jean-Baptiste Poline; Edward Vul; Tal Yarkoni
Journal:  Nat Rev Neurosci       Date:  2017-01-05       Impact factor: 34.870

5.  Identifying novel associations in GWAS by hierarchical Bayesian latent variable detection of differentially misclassified phenotypes.

Authors:  Afrah Shafquat; Ronald G Crystal; Jason G Mezey
Journal:  BMC Bioinformatics       Date:  2020-05-07       Impact factor: 3.169

6.  This I believe in genetics: discovery can be a nuisance, replication is science, implementation matters.

Authors:  John P A Ioannidis
Journal:  Front Genet       Date:  2013-03-14       Impact factor: 4.599

7.  Screening for gene-environment (G×E) interaction using omics data from exposed individuals: an application to gene-arsenic interaction.

Authors:  Maria Argos; Lin Tong; Shantanu Roy; Mekala Sabarinathan; Alauddin Ahmed; Md Tariqul Islam; Tariqul Islam; Muhammad Rakibuz-Zaman; Golam Sarwar; Hasan Shahriar; Mahfuzar Rahman; Md Yunus; Joseph H Graziano; Farzana Jasmine; Muhammad G Kibriya; Xiang Zhou; Habibul Ahsan; Brandon L Pierce
Journal:  Mamm Genome       Date:  2018-02-16       Impact factor: 3.224

Review 8.  What is next after the genes for autoimmunity?

Authors:  John Castiblanco; Mauricio Arcos-Burgos; Juan-Manuel Anaya
Journal:  BMC Med       Date:  2013-09-04       Impact factor: 8.775

9.  A human rights approach to an international code of conduct for genomic and clinical data sharing.

Authors:  Bartha M Knoppers; Jennifer R Harris; Isabelle Budin-Ljøsne; Edward S Dove
Journal:  Hum Genet       Date:  2014-02-27       Impact factor: 4.132

  9 in total

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