Literature DB >> 22467181

On the future of genetic risk assessment.

Hans-Hilger Ropers1.   

Abstract

Next-generation sequencing (NGS) techniques have greatly accelerated the molecular elucidation of Mendelian disorders, and affordable NGS-based diagnostic tests are around the corner that promise to detect or rule out mutations in specific subsets of the known disease genes. Whole exome sequencing and shortly afterwards whole genome sequencing (WGS) will become an even more comprehensive alternative to such targeted tests. In view of the current enthusiasm to implement these methods, but also given their rapidly dropping costs, it is quite possible that WGS will soon be adopted as universal intake test in Clinical Genetics. Central databases and large-scale genotype-phenotype comparisons will be required to progressively identify the clinically relevant sequence variants and to distinguish them from neutral polymorphisms in the human genome, and these databases will become indispensable for the interpretation of individual genome sequences. In this scenario, there will be massively growing demand for genetic counselling, but the need for experienced syndromologists will not increase proportionally, as the success of the diagnostic process will become far less dependent on the ability of clinical geneticists to reliably recognize genetic syndromes.

Entities:  

Year:  2012        PMID: 22467181      PMCID: PMC3419289          DOI: 10.1007/s12687-012-0092-2

Source DB:  PubMed          Journal:  J Community Genet        ISSN: 1868-310X


  31 in total

Review 1.  Target-enrichment strategies for next-generation sequencing.

Authors:  Lira Mamanova; Alison J Coffey; Carol E Scott; Iwanka Kozarewa; Emily H Turner; Akash Kumar; Eleanor Howard; Jay Shendure; Daniel J Turner
Journal:  Nat Methods       Date:  2010-02       Impact factor: 28.547

2.  Mutations in SYNGAP1 in autosomal nonsyndromic mental retardation.

Authors:  Fadi F Hamdan; Julie Gauthier; Dan Spiegelman; Anne Noreau; Yan Yang; Stéphanie Pellerin; Sylvia Dobrzeniecka; Mélanie Côté; Elizabeth Perreau-Linck; Elizabeth Perreault-Linck; Lionel Carmant; Guy D'Anjou; Eric Fombonne; Anjene M Addington; Judith L Rapoport; Lynn E Delisi; Marie-Odile Krebs; Faycal Mouaffak; Ridha Joober; Laurent Mottron; Pierre Drapeau; Claude Marineau; Ronald G Lafrenière; Jean Claude Lacaille; Guy A Rouleau; Jacques L Michaud
Journal:  N Engl J Med       Date:  2009-02-05       Impact factor: 91.245

Review 3.  Next-generation DNA sequencing methods.

Authors:  Elaine R Mardis
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

4.  Genomics shifts focus to rare diseases.

Authors:  Erika Check Hayden
Journal:  Nature       Date:  2009-09-24       Impact factor: 49.962

5.  Fetal-specific DNA methylation ratio permits noninvasive prenatal diagnosis of trisomy 21.

Authors:  Elisavet A Papageorgiou; Alex Karagrigoriou; Evdokia Tsaliki; Voula Velissariou; Nigel P Carter; Philippos C Patsalis
Journal:  Nat Med       Date:  2011-03-06       Impact factor: 53.440

6.  Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants.

Authors:  Yingrui Li; Nicolas Vinckenbosch; Geng Tian; Emilia Huerta-Sanchez; Tao Jiang; Hui Jiang; Anders Albrechtsen; Gitte Andersen; Hongzhi Cao; Thorfinn Korneliussen; Niels Grarup; Yiran Guo; Ines Hellman; Xin Jin; Qibin Li; Jiangtao Liu; Xiao Liu; Thomas Sparsø; Meifang Tang; Honglong Wu; Renhua Wu; Chang Yu; Hancheng Zheng; Arne Astrup; Lars Bolund; Johan Holmkvist; Torben Jørgensen; Karsten Kristiansen; Ole Schmitz; Thue W Schwartz; Xiuqing Zhang; Ruiqiang Li; Huanming Yang; Jian Wang; Torben Hansen; Oluf Pedersen; Rasmus Nielsen; Jun Wang
Journal:  Nat Genet       Date:  2010-10-03       Impact factor: 38.330

7.  Whole-genome sequencing for optimized patient management.

Authors:  Matthew N Bainbridge; Wojciech Wiszniewski; David R Murdock; Jennifer Friedman; Claudia Gonzaga-Jauregui; Irene Newsham; Jeffrey G Reid; John K Fink; Margaret B Morgan; Marie-Claude Gingras; Donna M Muzny; Linh D Hoang; Shahed Yousaf; James R Lupski; Richard A Gibbs
Journal:  Sci Transl Med       Date:  2011-06-15       Impact factor: 17.956

Review 8.  Unlocking Mendelian disease using exome sequencing.

Authors:  Christian Gilissen; Alexander Hoischen; Han G Brunner; Joris A Veltman
Journal:  Genome Biol       Date:  2011-09-14       Impact factor: 13.583

9.  The diploid genome sequence of an individual human.

Authors:  Samuel Levy; Granger Sutton; Pauline C Ng; Lars Feuk; Aaron L Halpern; Brian P Walenz; Nelson Axelrod; Jiaqi Huang; Ewen F Kirkness; Gennady Denisov; Yuan Lin; Jeffrey R MacDonald; Andy Wing Chun Pang; Mary Shago; Timothy B Stockwell; Alexia Tsiamouri; Vineet Bafna; Vikas Bansal; Saul A Kravitz; Dana A Busam; Karen Y Beeson; Tina C McIntosh; Karin A Remington; Josep F Abril; John Gill; Jon Borman; Yu-Hui Rogers; Marvin E Frazier; Stephen W Scherer; Robert L Strausberg; J Craig Venter
Journal:  PLoS Biol       Date:  2007-09-04       Impact factor: 8.029

10.  Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing.

Authors:  Andreas Gnirke; Alexandre Melnikov; Jared Maguire; Peter Rogov; Emily M LeProust; William Brockman; Timothy Fennell; Georgia Giannoukos; Sheila Fisher; Carsten Russ; Stacey Gabriel; David B Jaffe; Eric S Lander; Chad Nusbaum
Journal:  Nat Biotechnol       Date:  2009-02-01       Impact factor: 54.908

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  22 in total

1.  Editorial: genetic aspects of preconception consultation in primary care.

Authors:  Jon D Emery; Anne L Dunlop; Leo P Ten Kate
Journal:  J Community Genet       Date:  2012-06-29

2.  Advantages of expanded universal carrier screening: what is at stake?

Authors:  Sanne van der Hout; Kim Ca Holtkamp; Lidewij Henneman; Guido de Wert; Wybo J Dondorp
Journal:  Eur J Hum Genet       Date:  2016-09-28       Impact factor: 4.246

3.  Genetic Counseling in the Era of Genomics: What's all the Fuss about?

Authors:  Gemma R Brett; Ella J Wilkins; Emma T Creed; Kirsty West; Anna Jarmolowicz; Giulia M Valente; Yael Prawer; Elly Lynch; Ivan Macciocca
Journal:  J Genet Couns       Date:  2018-01-24       Impact factor: 2.537

4.  Patient actions and reactions after receiving negative results from expanded carrier screening.

Authors:  S A Kraft; J L Schneider; M C Leo; T L Kauffman; J V Davis; K M Porter; C K McMullen; B S Wilfond; K A B Goddard
Journal:  Clin Genet       Date:  2018-03-13       Impact factor: 4.438

5.  Genetic counselors' views and experiences with the clinical integration of genome sequencing.

Authors:  Kalotina Machini; Jessica Douglas; Alicia Braxton; Judith Tsipis; Kate Kramer
Journal:  J Genet Couns       Date:  2014-03-28       Impact factor: 2.537

6.  Inferring Transmission Histories of Rare Alleles in Population-Scale Genealogies.

Authors:  Dominic Nelson; Claudia Moreau; Marianne de Vriendt; Yixiao Zeng; Christoph Preuss; Hélène Vézina; Emmanuel Milot; Gregor Andelfinger; Damian Labuda; Simon Gravel
Journal:  Am J Hum Genet       Date:  2018-12-06       Impact factor: 11.025

7.  What can be offered to couples at (possibly) increased genetic risk?

Authors:  Andrew P Read; Dian Donnai
Journal:  J Community Genet       Date:  2012-07-04

8.  Diagnostic exome sequencing identifies two novel IQSEC2 mutations associated with X-linked intellectual disability with seizures: implications for genetic counseling and clinical diagnosis.

Authors:  Stephanie K Gandomi; K D Farwell Gonzalez; M Parra; L Shahmirzadi; J Mancuso; P Pichurin; R Temme; S Dugan; W Zeng; Sha Tang
Journal:  J Genet Couns       Date:  2013-12-04       Impact factor: 2.537

9.  Female and male perspectives on male partner roles in expanded carrier screening.

Authors:  Sarah Jurgensmeyer; Sarah Walterman; Andrew Wagner; Kenny Wong; Annie Bao; Sarah Stueber; Sara Spencer
Journal:  J Assist Reprod Genet       Date:  2021-01-06       Impact factor: 3.412

10.  Self-guided management of exome and whole-genome sequencing results: changing the results return model.

Authors:  Joon-Ho Yu; Seema M Jamal; Holly K Tabor; Michael J Bamshad
Journal:  Genet Med       Date:  2013-04-25       Impact factor: 8.822

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