Literature DB >> 22440623

Single-molecule studies of viral DNA packaging.

Douglas E Smith1.   

Abstract

Assembly of many dsDNA viruses involves packaging of DNA molecules into pre-assembled procapsids by portal molecular motor complexes. Techniques have recently been developed using optical tweezers to directly measure the packaging of single DNA molecules into single procapsids in real time and the forces generated by the molecular motor. Three different viruses, phages phi29, lambda, and T4, have been studied, revealing interesting similarities and differences in packaging dynamics. Single-molecule fluorescence methods have also been used to measure packaging kinetics and motor conformations. Here we review recent discoveries made using these new techniques.
Copyright © 2011 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22440623      PMCID: PMC4393007          DOI: 10.1016/j.coviro.2011.05.023

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN: 1879-6257            Impact factor:   7.090


  47 in total

1.  Forces during bacteriophage DNA packaging and ejection.

Authors:  Prashant K Purohit; Mandar M Inamdar; Paul D Grayson; Todd M Squires; Jané Kondev; Rob Phillips
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

2.  Mechanism of force generation of a viral DNA packaging motor.

Authors:  Yann R Chemla; K Aathavan; Jens Michaelis; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Carlos Bustamante
Journal:  Cell       Date:  2005-09-09       Impact factor: 41.582

3.  Optical trapping.

Authors:  Keir C Neuman; Steven M Block
Journal:  Rev Sci Instrum       Date:  2004-09       Impact factor: 1.523

4.  The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids.

Authors:  Siyang Sun; Kiran Kondabagil; Petra M Gentz; Michael G Rossmann; Venigalla B Rao
Journal:  Mol Cell       Date:  2007-03-23       Impact factor: 17.970

5.  Building a virus from scratch: assembly of an infectious virus using purified components in a rigorously defined biochemical assay system.

Authors:  Hélène Gaussier; Qin Yang; Carlos Enrique Catalano
Journal:  J Mol Biol       Date:  2006-01-25       Impact factor: 5.469

6.  The Q motif of a viral packaging motor governs its force generation and communicates ATP recognition to DNA interaction.

Authors:  James M Tsay; Jean Sippy; Michael Feiss; Douglas E Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-17       Impact factor: 11.205

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  The DNA translocating ATPase of bacteriophage T4 packaging motor.

Authors:  Kiran R Kondabagil; Zhihong Zhang; Venigalla B Rao
Journal:  J Mol Biol       Date:  2006-08-25       Impact factor: 5.469

9.  DNA crunching by a viral packaging motor: Compression of a procapsid-portal stalled Y-DNA substrate.

Authors:  Krishanu Ray; Chandran R Sabanayagam; Joseph R Lakowicz; Lindsay W Black
Journal:  Virology       Date:  2010-01-12       Impact factor: 3.616

10.  Experimental test of connector rotation during DNA packaging into bacteriophage phi29 capsids.

Authors:  Thorsten Hugel; Jens Michaelis; Craig L Hetherington; Paul J Jardine; Shelley Grimes; Jessica M Walter; Wayne Falk; Dwight L Anderson; Carlos Bustamante
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

View more
  32 in total

1.  Strongly correlated electrostatics of viral genome packaging.

Authors:  Toan T Nguyen
Journal:  J Biol Phys       Date:  2013-04-02       Impact factor: 1.365

2.  Polymorphism of DNA conformation inside the bacteriophage capsid.

Authors:  Amélie Leforestier
Journal:  J Biol Phys       Date:  2013-04-12       Impact factor: 1.365

3.  Entropy, energy, and bending of DNA in viral capsids.

Authors:  Avinoam Ben-Shaul
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

4.  Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection.

Authors:  Nicholas Keller; Zachary T Berndsen; Paul J Jardine; Douglas E Smith
Journal:  Phys Rev E       Date:  2017-05-17       Impact factor: 2.529

5.  Single-molecule FRET methods to study the dynamics of proteins at work.

Authors:  Hisham Mazal; Gilad Haran
Journal:  Curr Opin Biomed Eng       Date:  2019-08-23

6.  Accurate measurement of force and displacement with optical tweezers using DNA molecules as metrology standards.

Authors:  Damian delToro; Douglas E Smith
Journal:  Appl Phys Lett       Date:  2014-04-08       Impact factor: 3.791

7.  Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA.

Authors:  Zachary T Berndsen; Nicholas Keller; Douglas E Smith
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

8.  Structure of a headful DNA-packaging bacterial virus at 2.9 Å resolution by electron cryo-microscopy.

Authors:  Haiyan Zhao; Kunpeng Li; Anna Y Lynn; Keith E Aron; Guimei Yu; Wen Jiang; Liang Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-20       Impact factor: 11.205

Review 9.  Single-molecule nanometry for biological physics.

Authors:  Hajin Kim; Taekjip Ha
Journal:  Rep Prog Phys       Date:  2012-12-18

10.  Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage Phi29.

Authors:  Nicholas Keller; Damian delToro; Shelley Grimes; Paul J Jardine; Douglas E Smith
Journal:  Phys Rev Lett       Date:  2014-06-17       Impact factor: 9.161

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.