Literature DB >> 23249673

Single-molecule nanometry for biological physics.

Hajin Kim1, Taekjip Ha.   

Abstract

Precision measurement is a hallmark of physics but the small length scale (∼nanometer) of elementary biological components and thermal fluctuations surrounding them challenge our ability to visualize their action. Here, we highlight the recent developments in single-molecule nanometry where the position of a single fluorescent molecule can be determined with nanometer precision, reaching the limit imposed by the shot noise, and the relative motion between two molecules can be determined with ∼0.3 nm precision at ∼1 ms time resolution, as well as how these new tools are providing fundamental insights into how motor proteins move on cellular highways. We will also discuss how interactions between three and four fluorescent molecules can be used to measure three and six coordinates, respectively, allowing us to correlate the movements of multiple components. Finally, we will discuss recent progress in combining angstrom-precision optical tweezers with single-molecule fluorescent detection, opening new windows for multi-dimensional single-molecule nanometry for biological physics.

Entities:  

Mesh:

Year:  2012        PMID: 23249673      PMCID: PMC3549428          DOI: 10.1088/0034-4885/76/1/016601

Source DB:  PubMed          Journal:  Rep Prog Phys        ISSN: 0034-4885


  146 in total

1.  Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking.

Authors:  Maxime Dahan; Sabine Lévi; Camilla Luccardini; Philippe Rostaing; Béatrice Riveau; Antoine Triller
Journal:  Science       Date:  2003-10-17       Impact factor: 47.728

2.  Force-fluorescence spectroscopy at the single-molecule level.

Authors:  Ruobo Zhou; Michael Schlierf; Taekjip Ha
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

3.  Detecting force-induced molecular transitions with fluorescence resonant energy transfer.

Authors:  Peter B Tarsa; Ricardo R Brau; Mariya Barch; Jorge M Ferrer; Yelena Freyzon; Paul Matsudaira; Matthew J Lang
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

Review 4.  Three-dimensional particle tracking via bifocal imaging.

Authors:  Erdal Toprak; Hamza Balci; Benjamin H Blehm; Paul R Selvin
Journal:  Nano Lett       Date:  2007-06-21       Impact factor: 11.189

5.  Mechanical control of the directional stepping dynamics of the kinesin motor.

Authors:  Changbong Hyeon; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-24       Impact factor: 11.205

6.  Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases.

Authors:  Bradley Zamft; Lacramioara Bintu; Toyotaka Ishibashi; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

Review 7.  Advances in single-molecule fluorescence methods for molecular biology.

Authors:  Chirlmin Joo; Hamza Balci; Yuji Ishitsuka; Chittanon Buranachai; Taekjip Ha
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

8.  Detecting intramolecular conformational dynamics of single molecules in short distance range with subnanometer sensitivity.

Authors:  Ruobo Zhou; Simone Kunzelmann; Martin R Webb; Taekjip Ha
Journal:  Nano Lett       Date:  2011-10-27       Impact factor: 11.189

9.  Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids.

Authors:  Asif Iqbal; Sinan Arslan; Burak Okumus; Timothy J Wilson; Gerard Giraud; David G Norman; Taekjip Ha; David M J Lilley
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-01       Impact factor: 11.205

10.  Directional loading and stimulation of PcrA helicase by the replication initiator protein RepD.

Authors:  Wenke Zhang; Mark S Dillingham; Christopher D Thomas; Stephanie Allen; Clive J Roberts; Panos Soultanas
Journal:  J Mol Biol       Date:  2007-05-24       Impact factor: 5.469

View more
  16 in total

Review 1.  Studying DNA-protein interactions with single-molecule Förster resonance energy transfer.

Authors:  Shazia Farooq; Carel Fijen; Johannes Hohlbein
Journal:  Protoplasma       Date:  2013-12-28       Impact factor: 3.356

Review 2.  High-throughput single-molecule studies of protein-DNA interactions.

Authors:  Aaron D Robison; Ilya J Finkelstein
Journal:  FEBS Lett       Date:  2014-05-21       Impact factor: 4.124

Review 3.  The bright future of single-molecule fluorescence imaging.

Authors:  Manuel F Juette; Daniel S Terry; Michael R Wasserman; Zhou Zhou; Roger B Altman; Qinsi Zheng; Scott C Blanchard
Journal:  Curr Opin Chem Biol       Date:  2014-06-21       Impact factor: 8.822

4.  High-Resolution Optical Tweezers Combined With Single-Molecule Confocal Microscopy.

Authors:  K D Whitley; M J Comstock; Y R Chemla
Journal:  Methods Enzymol       Date:  2016-12-14       Impact factor: 1.600

5.  Site-Specific Three-Color Labeling of α-Synuclein via Conjugation to Uniquely Reactive Cysteines during Assembly by Native Chemical Ligation.

Authors:  Taehyung C Lee; Crystal R Moran; Philip A Cistrone; Philip E Dawson; Ashok A Deniz
Journal:  Cell Chem Biol       Date:  2018-04-19       Impact factor: 8.116

6.  Distinguishing Signatures of Multipathway Conformational Transitions.

Authors:  Christopher A Pierse; Olga K Dudko
Journal:  Phys Rev Lett       Date:  2017-02-21       Impact factor: 9.161

7.  Improved Glass Surface Passivation for Single-Molecule Nanoarrays.

Authors:  Haogang Cai; Shalom J Wind
Journal:  Langmuir       Date:  2016-09-26       Impact factor: 3.882

8.  Dual Unnatural Amino Acid Incorporation and Click-Chemistry Labeling to Enable Single-Molecule FRET Studies of p97 Folding.

Authors:  Taehyung C Lee; Minjin Kang; Chan Hyuk Kim; Peter G Schultz; Eli Chapman; Ashok A Deniz
Journal:  Chembiochem       Date:  2016-04-26       Impact factor: 3.164

9.  Regeneration of PEG slide for multiple rounds of single-molecule measurements.

Authors:  Tapas Paul; Taekjip Ha; Sua Myong
Journal:  Biophys J       Date:  2021-03-04       Impact factor: 4.033

10.  An improved surface passivation method for single-molecule studies.

Authors:  Boyang Hua; Kyu Young Han; Ruobo Zhou; Hajin Kim; Xinghua Shi; Sanjaya C Abeysirigunawardena; Ankur Jain; Digvijay Singh; Vasudha Aggarwal; Sarah A Woodson; Taekjip Ha
Journal:  Nat Methods       Date:  2014-10-12       Impact factor: 28.547

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.