Literature DB >> 16143101

Mechanism of force generation of a viral DNA packaging motor.

Yann R Chemla1, K Aathavan, Jens Michaelis, Shelley Grimes, Paul J Jardine, Dwight L Anderson, Carlos Bustamante.   

Abstract

A large family of multimeric ATPases are involved in such diverse tasks as cell division, chromosome segregation, DNA recombination, strand separation, conjugation, and viral genome packaging. One such system is the Bacillus subtilis phage phi 29 DNA packaging motor, which generates large forces to compact its genome into a small protein capsid. Here we use optical tweezers to study, at the single-molecule level, the mechanism of force generation in this motor. We determine the kinetic parameters of the packaging motor and their dependence on external load to show that DNA translocation does not occur during ATP binding but is likely triggered by phosphate release. We also show that the motor subunits act in a coordinated, successive fashion with high processivity. Finally, we propose a minimal mechanochemical cycle of this DNA-translocating ATPase that rationalizes all of our findings.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16143101     DOI: 10.1016/j.cell.2005.06.024

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  127 in total

1.  Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Authors:  Siyang Sun; Song Gao; Kiran Kondabagil; Ye Xiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

2.  Mechanistic constraints from the substrate concentration dependence of enzymatic fluctuations.

Authors:  Jeffrey R Moffitt; Yann R Chemla; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-20       Impact factor: 11.205

3.  Mutations altering a structurally conserved loop-helix-loop region of a viral packaging motor change DNA translocation velocity and processivity.

Authors:  James M Tsay; Jean Sippy; Damian DelToro; Benjamin T Andrews; Bonnie Draper; Venigalla Rao; Carlos E Catalano; Michael Feiss; Douglas E Smith
Journal:  J Biol Chem       Date:  2010-06-04       Impact factor: 5.157

4.  High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics.

Authors:  David Dulin; Tao Ju Cui; Jelmer Cnossen; Margreet W Docter; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

Review 5.  Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.

Authors:  Hernan G Garcia; Paul Grayson; Lin Han; Mandar Inamdar; Jané Kondev; Philip C Nelson; Rob Phillips; Jonathan Widom; Paul A Wiggins
Journal:  Biopolymers       Date:  2007-02-05       Impact factor: 2.505

Review 6.  High-resolution, single-molecule measurements of biomolecular motion.

Authors:  William J Greenleaf; Michael T Woodside; Steven M Block
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

Review 7.  The nuts and bolts of ring-translocase structure and mechanism.

Authors:  Artem Y Lyubimov; Melania Strycharska; James M Berger
Journal:  Curr Opin Struct Biol       Date:  2011-02-01       Impact factor: 6.809

8.  Substrate-translocating loops regulate mechanochemical coupling and power production in AAA+ protease ClpXP.

Authors:  Piere Rodriguez-Aliaga; Luis Ramirez; Frank Kim; Carlos Bustamante; Andreas Martin
Journal:  Nat Struct Mol Biol       Date:  2016-09-26       Impact factor: 15.369

Review 9.  Single molecule techniques in DNA repair: a primer.

Authors:  Craig D Hughes; Michelle Simons; Cassidy E Mackenzie; Bennett Van Houten; Neil M Kad
Journal:  DNA Repair (Amst)       Date:  2014-05-10

Review 10.  Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.

Authors:  Venigalla B Rao; Michael Feiss
Journal:  Annu Rev Virol       Date:  2015-09-10       Impact factor: 10.431

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.