Literature DB >> 23860869

Polymorphism of DNA conformation inside the bacteriophage capsid.

Amélie Leforestier1.   

Abstract

Double-stranded DNA bacteriophage genomes are packaged into their icosahedral capsids at the highest densities known so far (about 50 % w:v). How the molecule is folded at such density and how its conformation changes upon ejection or packaging are fascinating questions still largely open. We review cryo-TEM analyses of DNA conformation inside partially filled capsids as a function of the physico-chemical environment (ions, osmotic pressure, temperature). We show that there exists a wide variety of DNA conformations. Strikingly, the different observed structures can be described by some of the different models proposed over the years for DNA organisation inside bacteriophage capsids: either spool-like structures with axial or concentric symmetries, or liquid crystalline structures characterised by a DNA homogeneous density. The relevance of these conformations for the understanding of DNA folding and unfolding upon ejection and packaging in vivo is discussed.

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Year:  2013        PMID: 23860869      PMCID: PMC3662419          DOI: 10.1007/s10867-013-9315-y

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  62 in total

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Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

2.  Real-time imaging of DNA ejection from single phage particles.

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Journal:  Curr Biol       Date:  2005-03-08       Impact factor: 10.834

3.  Langevin dynamics simulations of genome packing in bacteriophage.

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Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

4.  Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery.

Authors:  Juan Chang; Peter Weigele; Jonathan King; Wah Chiu; Wen Jiang
Journal:  Structure       Date:  2006-05-25       Impact factor: 5.006

5.  Structural and thermodynamic principles of viral packaging.

Authors:  Anton S Petrov; Stephen C Harvey
Journal:  Structure       Date:  2007-01       Impact factor: 5.006

6.  Building a virus from scratch: assembly of an infectious virus using purified components in a rigorously defined biochemical assay system.

Authors:  Hélène Gaussier; Qin Yang; Carlos Enrique Catalano
Journal:  J Mol Biol       Date:  2006-01-25       Impact factor: 5.469

7.  The DNA translocating ATPase of bacteriophage T4 packaging motor.

Authors:  Kiran R Kondabagil; Zhihong Zhang; Venigalla B Rao
Journal:  J Mol Biol       Date:  2006-08-25       Impact factor: 5.469

8.  Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus.

Authors:  Wen Jiang; Juan Chang; Joanita Jakana; Peter Weigele; Jonathan King; Wah Chiu
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

9.  Effects of condensing agent and nuclease on the extent of ejection from phage lambda.

Authors:  Alex Evilevitch
Journal:  J Phys Chem B       Date:  2006-11-09       Impact factor: 2.991

10.  Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29.

Authors:  Derek N Fuller; John Peter Rickgauer; Paul J Jardine; Shelley Grimes; Dwight L Anderson; Douglas E Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-07       Impact factor: 11.205

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  3 in total

1.  Ejecting phage DNA against cellular turgor pressure.

Authors:  Sanjin Marion; Antonio Šiber
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

Review 2.  Molecular architecture of tailed double-stranded DNA phages.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Bacteriophage       Date:  2014-02-21

3.  Shapes of minimal-energy DNA ropes condensed in confinement.

Authors:  Antonio Šiber
Journal:  Sci Rep       Date:  2016-07-01       Impact factor: 4.379

  3 in total

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