Literature DB >> 28618627

Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection.

Nicholas Keller1, Zachary T Berndsen1,2, Paul J Jardine3, Douglas E Smith1.   

Abstract

We compare forces resisting DNA packaging and forces driving DNA ejection in bacteriophage phi29 with theoretical predictions. Ejection of DNA from prohead-motor complexes is triggered by heating complexes after in vitro packaging and force is inferred from the suppression of ejection by applied osmotic pressure. Ejection force from 0% to 80% filling is found to be in quantitative agreement with predictions of a continuum mechanics model that assumes a repulsive DNA-DNA interaction potential based on DNA condensation studies and predicts an inverse-spool conformation. Force resisting DNA packaging from ∼80% to 100% filling inferred from optical tweezers studies is also consistent with the predictions of this model. The striking agreement with these two different measurements suggests that the overall energetics of DNA packaging is well described by the model. However, since electron microscopy studies of phi29 do not reveal a spool conformation, our findings suggest that the spool model overestimates the role of bending rigidity and underestimates the role of intrastrand repulsion. Below ∼80% filling the inferred forces resisting packaging are unexpectedly lower than the inferred ejection forces, suggesting that in this filling range the forces are less accurately determined or strongly temperature dependent.

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Year:  2017        PMID: 28618627      PMCID: PMC5953208          DOI: 10.1103/PhysRevE.95.052408

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  33 in total

1.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

2.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

3.  Langevin dynamics simulations of genome packing in bacteriophage.

Authors:  Christopher Forrey; M Muthukumar
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

4.  The Q motif of a viral packaging motor governs its force generation and communicates ATP recognition to DNA interaction.

Authors:  James M Tsay; Jean Sippy; Michael Feiss; Douglas E Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-17       Impact factor: 11.205

5.  Encapsidated conformation of bacteriophage T7 DNA.

Authors:  M E Cerritelli; N Cheng; A H Rosenberg; C E McPherson; F P Booy; A C Steven
Journal:  Cell       Date:  1997-10-17       Impact factor: 41.582

Review 6.  Single-molecule studies of viral DNA packaging.

Authors:  Douglas E Smith
Journal:  Curr Opin Virol       Date:  2011-07-01       Impact factor: 7.090

7.  Counterion-induced condesation of deoxyribonucleic acid. a light-scattering study.

Authors:  R W Wilson; V A Bloomfield
Journal:  Biochemistry       Date:  1979-05-29       Impact factor: 3.162

8.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

9.  Can Changes in Temperature or Ionic Conditions Modify the DNA Organization in the Full Bacteriophage Capsid?

Authors:  Marta de Frutos; Amélie Leforestier; Jéril Degrouard; Nebraska Zambrano; Frank Wien; Pascale Boulanger; Sandrine Brasilès; Madalena Renouard; Dominique Durand; Françoise Livolant
Journal:  J Phys Chem B       Date:  2016-05-06       Impact factor: 2.991

10.  Salt-dependent DNA-DNA spacings in intact bacteriophage λ reflect relative importance of DNA self-repulsion and bending energies.

Authors:  Xiangyun Qiu; Donald C Rau; V Adrian Parsegian; Li Tai Fang; Charles M Knobler; William M Gelbart
Journal:  Phys Rev Lett       Date:  2011-01-12       Impact factor: 9.161

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  2 in total

1.  Evidence that a catalytic glutamate and an 'Arginine Toggle' act in concert to mediate ATP hydrolysis and mechanochemical coupling in a viral DNA packaging motor.

Authors:  David Ortiz; Damian delToro; Mariam Ordyan; Joshua Pajak; Jean Sippy; Alexis Catala; Choon-Seok Oh; Amber Vu; Gaurav Arya; Michael Feiss; Douglas E Smith; Carlos E Catalano
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

2.  Function of a viral genome packaging motor from bacteriophage T4 is insensitive to DNA sequence.

Authors:  Youbin Mo; Nicholas Keller; Damian delToro; Neeti Ananthaswamy; Stephen C Harvey; Venigalla B Rao; Douglas E Smith
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 19.160

  2 in total

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