Literature DB >> 22412698

(2E)-2-(5-Bromo-2-hy-droxy-3-meth-oxy-benzyl-idene)-N-cyclo-hexyl-hydrazine-carbothio-amide.

Jinsa Mary Jacob1, M R Prathapachandra Kurup.   

Abstract

The title compound, C(15)H(20)BrN(3)O(2)S, crystallizes in the thio-amide form and adopts an E,E conformation with respect to the azomethine and hydrazinic bonds, respectively. The mol-ecules are paired through N-H⋯O and O-H⋯S hydrogen bonds, leading to the formation of centrosymmetric dimers in the crystal. These dimers are stacked along the a axis and are inter-connected through N-H⋯S hydrogen bonds to generate polymeric chains. The structure also features C-H⋯π interactions. An intra-molecular O-H⋯O bond is also present.

Entities:  

Year:  2012        PMID: 22412698      PMCID: PMC3297895          DOI: 10.1107/S1600536812007039

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of hydrazinecarbothio­amide and its derivatives, see: Barber et al. (1992 ▶); Parrilha et al. (2011 ▶). For the synthesis, see: Klayman et al. (1979 ▶). For related structures, see: Dutta et al. (1997 ▶); Seena et al. (2006 ▶, 2008 ▶); Nisha et al. (2011 ▶). For standard bond-length data, see: Huheey et al. (1993 ▶); March (1992 ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H20BrN3O2S M = 386.31 Triclinic, a = 5.7883 (4) Å b = 11.412 (1) Å c = 13.1312 (12) Å α = 75.194 (4)° β = 86.493 (3)° γ = 83.489 (3)° V = 832.72 (12) Å3 Z = 2 Mo Kα radiation μ = 2.60 mm−1 T = 296 K 0.30 × 0.25 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.509, T max = 0.562 12149 measured reflections 2923 independent reflections 2521 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.098 S = 1.12 2923 reflections 213 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007039/fj2514sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007039/fj2514Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007039/fj2514Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H20BrN3O2SZ = 2
Mr = 386.31F(000) = 396
Triclinic, P1Dx = 1.541 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7883 (4) ÅCell parameters from 6391 reflections
b = 11.412 (1) Åθ = 2.7–27.9°
c = 13.1312 (12) ŵ = 2.60 mm1
α = 75.194 (4)°T = 296 K
β = 86.493 (3)°Block, colourless
γ = 83.489 (3)°0.30 × 0.25 × 0.25 mm
V = 832.72 (12) Å3
Bruker APEXII CCD diffractometer2923 independent reflections
Radiation source: fine-focus sealed tube2521 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.070
Detector resolution: 8.33 pixels mm-1θmax = 25.0°, θmin = 2.7°
ω and φ scanh = −6→6
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −13→13
Tmin = 0.509, Tmax = 0.562l = −15→15
12149 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0194P)2 + 0.6265P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max = 0.001
2923 reflectionsΔρmax = 0.27 e Å3
213 parametersΔρmin = −0.41 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0142 (18)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.42662 (6)0.51878 (3)0.63154 (3)0.05382 (17)
S10.75115 (13)0.88705 (7)0.80347 (7)0.0448 (2)
O1−0.1322 (4)0.2029 (2)0.97526 (18)0.0520 (6)
O20.1901 (4)0.3362 (2)0.99890 (19)0.0471 (6)
N10.2789 (4)0.6672 (2)0.8130 (2)0.0377 (6)
N20.4703 (4)0.7170 (2)0.8316 (2)0.0398 (6)
N30.3358 (5)0.8967 (2)0.7247 (2)0.0407 (6)
C1−0.0696 (5)0.5340 (3)0.7638 (2)0.0384 (7)
H1−0.05230.60890.71670.046*
C2−0.2371 (5)0.4647 (3)0.7502 (2)0.0391 (7)
C3−0.2709 (5)0.3530 (3)0.8186 (2)0.0405 (7)
H3−0.38770.30810.80820.049*
C4−0.1268 (5)0.3105 (3)0.9024 (2)0.0379 (7)
C50.0459 (5)0.3795 (3)0.9177 (2)0.0358 (7)
C60.0749 (5)0.4910 (3)0.8492 (2)0.0360 (7)
C70.2600 (5)0.5588 (3)0.8659 (2)0.0370 (7)
H70.36810.52180.91690.044*
C80.5028 (5)0.8331 (3)0.7839 (2)0.0350 (7)
C90.3347 (5)1.0238 (3)0.6669 (2)0.0387 (7)
H90.49491.03990.64390.046*
C100.1921 (7)1.0438 (3)0.5704 (3)0.0517 (9)
H10A0.03691.02060.59180.062*
H10B0.26260.99220.52620.062*
C110.1758 (8)1.1755 (4)0.5079 (3)0.0687 (11)
H11A0.32861.19570.47880.082*
H11B0.07341.18660.44960.082*
C120.0842 (8)1.2596 (4)0.5760 (4)0.0710 (12)
H12A−0.07471.24510.59920.085*
H12B0.08381.34350.53510.085*
C130.2320 (7)1.2397 (3)0.6707 (3)0.0602 (10)
H13A0.16751.29300.71450.072*
H13B0.38821.26010.64760.072*
C140.2423 (6)1.1085 (3)0.7344 (3)0.0481 (8)
H14A0.34231.09690.79360.058*
H14B0.08781.08980.76200.058*
C15−0.2900 (7)0.1217 (3)0.9629 (3)0.0551 (9)
H15A−0.44660.15770.96930.083*
H15B−0.26590.04681.01650.083*
H15C−0.26430.10550.89470.083*
H3'0.211 (4)0.866 (3)0.723 (3)0.041 (9)*
H20.576 (5)0.672 (3)0.868 (2)0.040 (9)*
H2'0.144 (6)0.277 (2)1.042 (2)0.055 (11)*
U11U22U33U12U13U23
Br10.0582 (3)0.0553 (3)0.0480 (2)−0.01859 (17)−0.01714 (16)−0.00386 (17)
S10.0339 (4)0.0390 (5)0.0610 (5)−0.0161 (3)−0.0082 (4)−0.0048 (4)
O10.0655 (15)0.0405 (13)0.0502 (14)−0.0291 (11)−0.0122 (11)0.0010 (11)
O20.0522 (14)0.0394 (13)0.0484 (14)−0.0181 (11)−0.0168 (11)0.0008 (11)
N10.0335 (13)0.0323 (14)0.0491 (15)−0.0107 (10)−0.0055 (11)−0.0096 (12)
N20.0335 (14)0.0287 (14)0.0568 (17)−0.0083 (11)−0.0134 (12)−0.0050 (12)
N30.0372 (15)0.0336 (14)0.0506 (16)−0.0158 (11)−0.0100 (12)−0.0019 (12)
C10.0387 (16)0.0334 (16)0.0433 (17)−0.0078 (13)−0.0013 (13)−0.0081 (14)
C20.0411 (17)0.0388 (17)0.0390 (17)−0.0107 (13)−0.0054 (13)−0.0088 (14)
C30.0400 (17)0.0419 (18)0.0435 (18)−0.0168 (13)−0.0023 (13)−0.0123 (14)
C40.0413 (17)0.0338 (16)0.0396 (17)−0.0147 (13)0.0013 (13)−0.0068 (13)
C50.0368 (16)0.0323 (16)0.0402 (17)−0.0090 (12)−0.0027 (13)−0.0097 (13)
C60.0351 (16)0.0311 (16)0.0443 (17)−0.0081 (12)−0.0020 (13)−0.0117 (13)
C70.0358 (16)0.0312 (16)0.0451 (18)−0.0089 (12)−0.0047 (13)−0.0083 (14)
C80.0333 (15)0.0342 (16)0.0393 (17)−0.0099 (12)0.0014 (12)−0.0103 (13)
C90.0399 (16)0.0325 (16)0.0429 (17)−0.0129 (12)−0.0049 (13)−0.0030 (13)
C100.066 (2)0.044 (2)0.0432 (19)−0.0136 (16)−0.0122 (16)−0.0028 (15)
C110.094 (3)0.050 (2)0.054 (2)−0.014 (2)−0.016 (2)0.0069 (19)
C120.067 (3)0.044 (2)0.086 (3)−0.0003 (18)0.001 (2)0.010 (2)
C130.071 (3)0.0349 (19)0.075 (3)−0.0115 (17)0.014 (2)−0.0166 (18)
C140.057 (2)0.0419 (19)0.048 (2)−0.0148 (15)0.0006 (16)−0.0106 (15)
C150.064 (2)0.044 (2)0.060 (2)−0.0312 (17)−0.0025 (18)−0.0071 (17)
Br1—C21.891 (3)C7—H70.9300
S1—C81.685 (3)C9—C141.506 (4)
O1—C41.352 (4)C9—C101.508 (4)
O1—C151.417 (4)C9—H90.9800
O2—C51.351 (4)C10—C111.513 (5)
O2—H2'0.826 (19)C10—H10A0.9700
N1—C71.267 (4)C10—H10B0.9700
N1—N21.363 (3)C11—C121.507 (6)
N2—C81.342 (4)C11—H11A0.9700
N2—H20.840 (18)C11—H11B0.9700
N3—C81.308 (4)C12—C131.507 (6)
N3—C91.454 (4)C12—H12A0.9700
N3—H3'0.842 (18)C12—H12B0.9700
C1—C21.366 (4)C13—C141.513 (5)
C1—C61.392 (4)C13—H13A0.9700
C1—H10.9300C13—H13B0.9700
C2—C31.385 (4)C14—H14A0.9700
C3—C41.374 (4)C14—H14B0.9700
C3—H30.9300C15—H15A0.9600
C4—C51.394 (4)C15—H15B0.9600
C5—C61.379 (4)C15—H15C0.9600
C6—C71.449 (4)
C4—O1—C15118.5 (3)C10—C9—H9108.5
C5—O2—H2'113 (3)C9—C10—C11111.4 (3)
C7—N1—N2115.6 (3)C9—C10—H10A109.3
C8—N2—N1120.9 (2)C11—C10—H10A109.3
C8—N2—H2120 (2)C9—C10—H10B109.3
N1—N2—H2119 (2)C11—C10—H10B109.3
C8—N3—C9125.6 (2)H10A—C10—H10B108.0
C8—N3—H3'119 (2)C12—C11—C10111.1 (3)
C9—N3—H3'115 (2)C12—C11—H11A109.4
C2—C1—C6119.1 (3)C10—C11—H11A109.4
C2—C1—H1120.4C12—C11—H11B109.4
C6—C1—H1120.4C10—C11—H11B109.4
C1—C2—C3122.6 (3)H11A—C11—H11B108.0
C1—C2—Br1119.6 (2)C11—C12—C13110.8 (3)
C3—C2—Br1117.8 (2)C11—C12—H12A109.5
C4—C3—C2118.1 (3)C13—C12—H12A109.5
C4—C3—H3120.9C11—C12—H12B109.5
C2—C3—H3120.9C13—C12—H12B109.5
O1—C4—C3126.0 (3)H12A—C12—H12B108.1
O1—C4—C5113.8 (3)C12—C13—C14110.8 (3)
C3—C4—C5120.2 (3)C12—C13—H13A109.5
O2—C5—C6119.3 (3)C14—C13—H13A109.5
O2—C5—C4120.0 (3)C12—C13—H13B109.5
C6—C5—C4120.7 (3)C14—C13—H13B109.5
C5—C6—C1119.2 (3)H13A—C13—H13B108.1
C5—C6—C7119.2 (3)C9—C14—C13110.4 (3)
C1—C6—C7121.5 (3)C9—C14—H14A109.6
N1—C7—C6121.9 (3)C13—C14—H14A109.6
N1—C7—H7119.1C9—C14—H14B109.6
C6—C7—H7119.1C13—C14—H14B109.6
N3—C8—N2116.6 (3)H14A—C14—H14B108.1
N3—C8—S1124.5 (2)O1—C15—H15A109.5
N2—C8—S1118.8 (2)O1—C15—H15B109.5
N3—C9—C14111.7 (3)H15A—C15—H15B109.5
N3—C9—C10108.2 (2)O1—C15—H15C109.5
C14—C9—C10111.4 (3)H15A—C15—H15C109.5
N3—C9—H9108.5H15B—C15—H15C109.5
C14—C9—H9108.5
C7—N1—N2—C8−176.8 (3)C2—C1—C6—C7178.1 (3)
C6—C1—C2—C30.5 (5)N2—N1—C7—C6−175.5 (3)
C6—C1—C2—Br1−177.5 (2)C5—C6—C7—N1−172.0 (3)
C1—C2—C3—C4−1.0 (5)C1—C6—C7—N110.1 (5)
Br1—C2—C3—C4177.1 (2)C9—N3—C8—N2179.5 (3)
C15—O1—C4—C33.8 (5)C9—N3—C8—S1−0.6 (5)
C15—O1—C4—C5−175.5 (3)N1—N2—C8—N34.1 (4)
C2—C3—C4—O1−178.6 (3)N1—N2—C8—S1−175.9 (2)
C2—C3—C4—C50.7 (5)C8—N3—C9—C14−86.2 (4)
O1—C4—C5—O20.7 (4)C8—N3—C9—C10150.8 (3)
C3—C4—C5—O2−178.7 (3)N3—C9—C10—C11178.1 (3)
O1—C4—C5—C6179.4 (3)C14—C9—C10—C1154.9 (4)
C3—C4—C5—C60.0 (5)C9—C10—C11—C12−54.6 (5)
O2—C5—C6—C1178.2 (3)C10—C11—C12—C1355.9 (5)
C4—C5—C6—C1−0.4 (5)C11—C12—C13—C14−57.4 (4)
O2—C5—C6—C70.2 (4)N3—C9—C14—C13−177.2 (3)
C4—C5—C6—C7−178.4 (3)C10—C9—C14—C13−56.0 (4)
C2—C1—C6—C50.2 (5)C12—C13—C14—C957.3 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2′···O10.83 (2)2.21 (4)2.616 (3)110 (3)
O2—H2′···S1i0.83 (2)2.43 (3)3.142 (2)145 (3)
N2—H2···O2i0.84 (2)2.25 (2)2.959 (3)142 (3)
N3—H3′···S1ii0.84 (2)2.81 (3)3.483 (3)138 (3)
C13—H13A···Cg1iii0.972.713.664 (4)168
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2′⋯O10.83 (2)2.21 (4)2.616 (3)110 (3)
O2—H2′⋯S1i0.83 (2)2.43 (3)3.142 (2)145 (3)
N2—H2⋯O2i0.84 (2)2.25 (2)2.959 (3)142 (3)
N3—H3′⋯S1ii0.84 (2)2.81 (3)3.483 (3)138 (3)
C13—H13ACg1iii0.972.713.664 (4)168

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  (E)-2-(4-Benz-yloxy-2-hy-droxy-benzyl-idene)-N-phenyl-hydrazinecarbothio-amide.

Authors:  K Nisha; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-25

2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Gabrieli L Parrilha; Jeferson G da Silva; Ludmila F Gouveia; Alan K Gasparoto; Roberta P Dias; Willian R Rocha; Daniel A Santos; Nivaldo L Speziali; Heloisa Beraldo
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4.  2-Acetylpyridine thiosemicarbazones. 1. A new class of potential antimalarial agents.

Authors:  D L Klayman; J F Bartosevich; T S Griffin; C J Mason; J P Scovill
Journal:  J Med Chem       Date:  1979-07       Impact factor: 7.446

  4 in total
  6 in total

1.  (E)-2-(4-Benz-yloxy-2-hy-droxy-benzyl-idene)-N-methyl-hydrazinecarbo-thio-amide.

Authors:  N R Sajitha; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-08

2.  (2E)-2-(5-Bromo-2-hy-droxy-3-meth-oxy-benzyl-idene)-N-phenyl-hydrazine-carbo-thio-amide.

Authors:  Jinsa Mary Jacob; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-23

3.  Crystal structure of (E)-2-[3-(tert-but-yl)-2-hy-droxy-benzyl-idene]-N-cyclo-hexyl-hydrazine-1-carbo-thio-amide.

Authors:  Md Azharul Arafath; Huey Chong Kwong; Farook Adam; Mohd R Razali
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-09-21

4.  Crystal structure of (E)-N-cyclo-hexyl-2-(2-hy-droxy-3-methyl-benzyl-idene)hydrazine-1-carbo-thio-amide.

Authors:  Md Azharul Arafath; Huey Chong Kwong; Farook Adam
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-06-28

5.  The crystal structure of ((cyclo-hexyl-amino){(Z)-2-[(E)-5-meth-oxy-3-nitro-2-oxido-benzyl-idene-κO]hydrazin-1-yl-idene-κN 2}methane-thiol-ato-κS)(dimethyl sulfoxide-κS)platinum(II): a supra-molecular two-dimensional network.

Authors:  Md Azharul Arafath; Huey Chong Kwong; Farook Adam
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-09-12

6.  Crystal structure of 2-[(E)-4-benz-yloxy-2-hy-droxy-benzyl-idene]-N-cyclo-hexyl-hydrazinecarbo-thio-amide aceto-nitrile hemisolvate.

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