| Literature DB >> 30319801 |
Md Azharul Arafath1, Huey Chong Kwong2, Farook Adam2, Mohd R Razali2.
Abstract
In the title compound, C18H27N3OS, the cyclo-hexane ring has a chair conformation. The azomethine C=N double bond has an E configuration. The nearly planar hydrazinecarbo-thio-amide moiety and substituted benzene ring are twisted by 31.13 (5)° relative to each other. The amide moiety and the cyclo-hexane ring are almost perpendicular to each other; a similar conformation was previously observed in reported structures. In the crystal, mol-ecules are linked by N-H⋯S hydrogen bonds, forming inversion dimers with an R 2 2(8) ring motif.Entities:
Keywords: carbothioamide Schiff base; crystal structure; cyclohexylhydrazine; soft Lewis base
Year: 2018 PMID: 30319801 PMCID: PMC6176448 DOI: 10.1107/S2056989018013129
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.834 (19) | 1.901 (19) | 2.6545 (12) | 149.6 (19) |
| C16—H16 | 0.98 | 2.46 | 3.0774 (16) | 121 |
| C17—H17 | 0.98 | 2.26 | 2.9101 (15) | 123 |
| N2—H1 | 0.833 (14) | 2.459 (14) | 3.2779 (11) | 165.6 (13) |
Symmetry code: (i) .
Figure 1The molecular structure with the atom-labelling scheme and displacement ellipsoids at the 50% probability level.
Figure 2A view of a centrosymmetric dimer of C18H27N3OS with N2—-H1N2⋯S1 hydrogen bonds shown as cyan dotted lines. Hydrogen atoms not involved in with these interactions are omitted for clarity.
Selected dihedral and torsion angles (°)
Dihedral is the dihedral angle between the mean planes of the benzylidene ring and the hydrazinecarbothioamide moiety. τ5 is the C8—N3—C9—C10 torsion angle.
| Compound | Dihedral | τ5 |
|---|---|---|
| Title compound | 31.13 (5) | 78.32 |
| BEVNAR | 28.50 | 94.47 |
| LAQCIR | 16.64 | 86.22 |
| NALKOD | 22.00, 36.40 | 79.01, 79.19 |
| OBOLOJ | 6.92 | 83.70 |
| XOYKAZ | 12.72 | 85.82 |
| BEFZIY | 4.70 | 83.42 |
Experimental details
| Crystal data | |
| Chemical formula | C18H27N3OS |
|
| 333.48 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 13.4168 (6), 6.6070 (3), 20.5831 (9) |
| β (°) | 93.032 (1) |
|
| 1822.03 (14) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.19 |
| Crystal size (mm) | 0.57 × 0.30 × 0.29 |
| Data collection | |
| Diffractometer | Bruker APEXII DUO CCD area-detector diffractometer |
| Absorption correction | Multi-scan ( |
|
| 0.774, 0.879 |
| No. of measured, independent and observed [ | 39751, 4195, 3819 |
|
| 0.031 |
| (sin θ/λ)max (Å−1) | 0.650 |
| Refinement | |
|
| 0.032, 0.086, 1.04 |
| No. of reflections | 4195 |
| No. of parameters | 223 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.38, −0.22 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), Mercury (Macrae et al., 2006 ▸), SHELX2013 (Sheldrick, 2015 ▸) and PLATON (Spek, 2009 ▸).
| C18H27N3OS | |
| Monoclinic, | Mo |
| Cell parameters from 9744 reflections | |
| θ = 2.4–32.8° | |
| µ = 0.19 mm−1 | |
| β = 93.032 (1)° | |
| Block, colourless | |
| 0.57 × 0.30 × 0.29 mm |
| Bruker APEXII DUO CCD area-detector diffractometer | 4195 independent reflections |
| Radiation source: fine-focus sealed tube | 3819 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Bruker, 2012 | |
| 39751 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.002 | |
| 4195 reflections | Δρmax = 0.38 e Å−3 |
| 223 parameters | Δρmin = −0.22 e Å−3 |
| Experimental. The following wavelength and cell were deduced by SADABS from the direction cosines etc. They are given here for emergency use only: CELL 0.71104 13.523 6.653 20.749 89.939 93.047 89.965 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 1.02419 (2) | −0.15365 (4) | 0.40715 (2) | 0.01701 (8) | |
| O1 | 0.65801 (6) | 0.39888 (12) | 0.39017 (4) | 0.02153 (18) | |
| N1 | 0.84612 (7) | 0.31101 (14) | 0.42569 (4) | 0.01542 (18) | |
| N2 | 0.92566 (7) | 0.17823 (14) | 0.43545 (5) | 0.01565 (19) | |
| N3 | 0.88665 (7) | 0.04928 (14) | 0.33416 (4) | 0.01665 (19) | |
| C1 | 0.67407 (8) | 0.57899 (16) | 0.42115 (5) | 0.0155 (2) | |
| C2 | 0.59978 (8) | 0.72977 (17) | 0.41452 (5) | 0.0164 (2) | |
| C3 | 0.61893 (8) | 0.91139 (17) | 0.44745 (5) | 0.0189 (2) | |
| H3A | 0.5707 | 1.0165 | 0.4433 | 0.023* | |
| C4 | 0.70586 (8) | 0.94540 (17) | 0.48615 (5) | 0.0190 (2) | |
| H4A | 0.7155 | 1.0707 | 0.5082 | 0.023* | |
| C5 | 0.77763 (8) | 0.79630 (16) | 0.49220 (5) | 0.0164 (2) | |
| H5A | 0.8366 | 0.8182 | 0.5189 | 0.020* | |
| C6 | 0.76359 (8) | 0.61241 (16) | 0.45906 (5) | 0.0145 (2) | |
| C7 | 0.84439 (8) | 0.46494 (16) | 0.46392 (5) | 0.0151 (2) | |
| H7A | 0.8971 | 0.4829 | 0.4961 | 0.018* | |
| C8 | 0.93944 (8) | 0.03134 (16) | 0.39073 (5) | 0.0148 (2) | |
| C9 | 0.88503 (8) | −0.09682 (16) | 0.28052 (5) | 0.0145 (2) | |
| H9A | 0.9545 | −0.1468 | 0.2754 | 0.017* | |
| C10 | 0.81847 (8) | −0.27750 (17) | 0.29436 (5) | 0.0185 (2) | |
| H10A | 0.7505 | −0.2291 | 0.3028 | 0.022* | |
| H10B | 0.8454 | −0.3488 | 0.3338 | 0.022* | |
| C11 | 0.81297 (9) | −0.42424 (17) | 0.23685 (6) | 0.0213 (2) | |
| H11A | 0.8797 | −0.4841 | 0.2316 | 0.026* | |
| H11B | 0.7663 | −0.5356 | 0.2459 | 0.026* | |
| C12 | 0.77785 (9) | −0.31813 (17) | 0.17386 (6) | 0.0206 (2) | |
| H12A | 0.7080 | −0.2728 | 0.1771 | 0.025* | |
| H12B | 0.7798 | −0.4147 | 0.1372 | 0.025* | |
| C13 | 0.84377 (9) | −0.13575 (17) | 0.16058 (5) | 0.0200 (2) | |
| H13A | 0.8166 | −0.0644 | 0.1212 | 0.024* | |
| H13B | 0.9119 | −0.1831 | 0.1521 | 0.024* | |
| C14 | 0.84919 (8) | 0.01120 (16) | 0.21804 (5) | 0.0175 (2) | |
| H14A | 0.8956 | 0.1230 | 0.2090 | 0.021* | |
| H14B | 0.7824 | 0.0703 | 0.2236 | 0.021* | |
| C15 | 0.50170 (8) | 0.69323 (18) | 0.37398 (6) | 0.0212 (2) | |
| C16 | 0.44095 (10) | 0.5302 (2) | 0.40747 (7) | 0.0339 (3) | |
| H16A | 0.4784 | 0.4028 | 0.4090 | 0.051* | |
| H16B | 0.3771 | 0.5102 | 0.3829 | 0.051* | |
| H16C | 0.4285 | 0.5737 | 0.4518 | 0.051* | |
| C17 | 0.52133 (10) | 0.6286 (2) | 0.30399 (6) | 0.0300 (3) | |
| H17A | 0.5615 | 0.7323 | 0.2835 | 0.045* | |
| H17B | 0.4576 | 0.6128 | 0.2790 | 0.045* | |
| H17C | 0.5574 | 0.4997 | 0.3048 | 0.045* | |
| C18 | 0.43846 (10) | 0.8868 (2) | 0.36863 (6) | 0.0290 (3) | |
| H18A | 0.4767 | 0.9941 | 0.3484 | 0.043* | |
| H18B | 0.4211 | 0.9298 | 0.4122 | 0.043* | |
| H18C | 0.3773 | 0.8600 | 0.3419 | 0.043* | |
| H1N2 | 0.9483 (11) | 0.161 (2) | 0.4737 (7) | 0.020 (3)* | |
| H1O1 | 0.7098 (14) | 0.330 (3) | 0.3961 (9) | 0.043 (5)* | |
| H1N3 | 0.8464 (11) | 0.149 (2) | 0.3316 (7) | 0.025 (4)* |
| S1 | 0.01723 (14) | 0.01842 (14) | 0.01519 (14) | 0.00573 (10) | −0.00098 (10) | −0.00137 (9) |
| O1 | 0.0196 (4) | 0.0160 (4) | 0.0282 (4) | 0.0037 (3) | −0.0070 (3) | −0.0059 (3) |
| N1 | 0.0151 (4) | 0.0153 (4) | 0.0158 (4) | 0.0025 (3) | 0.0001 (3) | 0.0010 (3) |
| N2 | 0.0162 (4) | 0.0168 (4) | 0.0135 (4) | 0.0049 (3) | −0.0025 (3) | −0.0005 (3) |
| N3 | 0.0192 (4) | 0.0151 (4) | 0.0153 (4) | 0.0045 (4) | −0.0023 (3) | −0.0021 (3) |
| C1 | 0.0177 (5) | 0.0139 (5) | 0.0152 (5) | −0.0003 (4) | 0.0017 (4) | −0.0002 (4) |
| C2 | 0.0156 (5) | 0.0185 (5) | 0.0152 (5) | 0.0019 (4) | 0.0023 (4) | 0.0021 (4) |
| C3 | 0.0197 (5) | 0.0166 (5) | 0.0207 (5) | 0.0041 (4) | 0.0048 (4) | 0.0012 (4) |
| C4 | 0.0231 (5) | 0.0148 (5) | 0.0195 (5) | −0.0004 (4) | 0.0045 (4) | −0.0025 (4) |
| C5 | 0.0172 (5) | 0.0172 (5) | 0.0151 (5) | −0.0022 (4) | 0.0026 (4) | −0.0005 (4) |
| C6 | 0.0161 (5) | 0.0144 (5) | 0.0132 (5) | 0.0009 (4) | 0.0026 (4) | 0.0014 (4) |
| C7 | 0.0150 (5) | 0.0160 (5) | 0.0142 (5) | −0.0001 (4) | 0.0002 (4) | 0.0012 (4) |
| C8 | 0.0140 (5) | 0.0146 (5) | 0.0158 (5) | −0.0007 (4) | 0.0015 (4) | −0.0002 (4) |
| C9 | 0.0155 (5) | 0.0144 (5) | 0.0137 (5) | 0.0009 (4) | 0.0002 (4) | −0.0016 (4) |
| C10 | 0.0205 (5) | 0.0180 (5) | 0.0170 (5) | −0.0018 (4) | 0.0006 (4) | 0.0023 (4) |
| C11 | 0.0251 (6) | 0.0153 (5) | 0.0233 (6) | −0.0024 (4) | −0.0012 (4) | −0.0005 (4) |
| C12 | 0.0228 (5) | 0.0203 (5) | 0.0183 (5) | −0.0030 (4) | −0.0020 (4) | −0.0033 (4) |
| C13 | 0.0242 (6) | 0.0218 (5) | 0.0140 (5) | −0.0031 (4) | 0.0006 (4) | −0.0012 (4) |
| C14 | 0.0215 (5) | 0.0153 (5) | 0.0156 (5) | −0.0016 (4) | −0.0005 (4) | 0.0010 (4) |
| C15 | 0.0168 (5) | 0.0252 (6) | 0.0211 (6) | 0.0049 (4) | −0.0022 (4) | −0.0007 (4) |
| C16 | 0.0194 (6) | 0.0392 (7) | 0.0422 (8) | −0.0066 (5) | −0.0058 (5) | 0.0052 (6) |
| C17 | 0.0263 (6) | 0.0391 (7) | 0.0237 (6) | 0.0126 (5) | −0.0071 (5) | −0.0079 (5) |
| C18 | 0.0237 (6) | 0.0352 (7) | 0.0274 (6) | 0.0138 (5) | −0.0035 (5) | −0.0036 (5) |
| S1—C8 | 1.6912 (11) | C10—H10A | 0.9900 |
| O1—C1 | 1.3619 (13) | C10—H10B | 0.9900 |
| O1—H1O1 | 0.836 (19) | C11—C12 | 1.5264 (16) |
| N1—C7 | 1.2867 (14) | C11—H11A | 0.9900 |
| N1—N2 | 1.3879 (12) | C11—H11B | 0.9900 |
| N2—C8 | 1.3571 (14) | C12—C13 | 1.5279 (16) |
| N2—H1N2 | 0.836 (15) | C12—H12A | 0.9900 |
| N3—C8 | 1.3357 (14) | C12—H12B | 0.9900 |
| N3—C9 | 1.4659 (13) | C13—C14 | 1.5290 (15) |
| N3—H1N3 | 0.854 (16) | C13—H13A | 0.9900 |
| C1—C2 | 1.4107 (15) | C13—H13B | 0.9900 |
| C1—C6 | 1.4145 (15) | C14—H14A | 0.9900 |
| C2—C3 | 1.3953 (16) | C14—H14B | 0.9900 |
| C2—C15 | 1.5394 (15) | C15—C18 | 1.5354 (16) |
| C3—C4 | 1.3953 (16) | C15—C16 | 1.5359 (18) |
| C3—H3A | 0.9500 | C15—C17 | 1.5384 (17) |
| C4—C5 | 1.3786 (15) | C16—H16A | 0.9800 |
| C4—H4A | 0.9500 | C16—H16B | 0.9800 |
| C5—C6 | 1.4012 (15) | C16—H16C | 0.9800 |
| C5—H5A | 0.9500 | C17—H17A | 0.9800 |
| C6—C7 | 1.4571 (14) | C17—H17B | 0.9800 |
| C7—H7A | 0.9500 | C17—H17C | 0.9800 |
| C9—C14 | 1.5260 (14) | C18—H18A | 0.9800 |
| C9—C10 | 1.5265 (15) | C18—H18B | 0.9800 |
| C9—H9A | 1.0000 | C18—H18C | 0.9800 |
| C10—C11 | 1.5288 (16) | ||
| C1—O1—H1O1 | 107.5 (12) | C10—C11—H11A | 109.3 |
| C7—N1—N2 | 116.72 (9) | C12—C11—H11B | 109.3 |
| C8—N2—N1 | 119.02 (9) | C10—C11—H11B | 109.3 |
| C8—N2—H1N2 | 119.2 (10) | H11A—C11—H11B | 108.0 |
| N1—N2—H1N2 | 117.3 (10) | C11—C12—C13 | 111.02 (9) |
| C8—N3—C9 | 125.75 (9) | C11—C12—H12A | 109.4 |
| C8—N3—H1N3 | 115.2 (10) | C13—C12—H12A | 109.4 |
| C9—N3—H1N3 | 118.7 (10) | C11—C12—H12B | 109.4 |
| O1—C1—C2 | 118.57 (9) | C13—C12—H12B | 109.4 |
| O1—C1—C6 | 120.22 (9) | H12A—C12—H12B | 108.0 |
| C2—C1—C6 | 121.21 (10) | C12—C13—C14 | 111.51 (9) |
| C3—C2—C1 | 116.69 (10) | C12—C13—H13A | 109.3 |
| C3—C2—C15 | 121.90 (10) | C14—C13—H13A | 109.3 |
| C1—C2—C15 | 121.40 (10) | C12—C13—H13B | 109.3 |
| C2—C3—C4 | 122.87 (10) | C14—C13—H13B | 109.3 |
| C2—C3—H3A | 118.6 | H13A—C13—H13B | 108.0 |
| C4—C3—H3A | 118.6 | C9—C14—C13 | 110.78 (9) |
| C5—C4—C3 | 119.68 (10) | C9—C14—H14A | 109.5 |
| C5—C4—H4A | 120.2 | C13—C14—H14A | 109.5 |
| C3—C4—H4A | 120.2 | C9—C14—H14B | 109.5 |
| C4—C5—C6 | 120.02 (10) | C13—C14—H14B | 109.5 |
| C4—C5—H5A | 120.0 | H14A—C14—H14B | 108.1 |
| C6—C5—H5A | 120.0 | C18—C15—C16 | 108.16 (10) |
| C5—C6—C1 | 119.49 (10) | C18—C15—C17 | 106.58 (10) |
| C5—C6—C7 | 117.78 (9) | C16—C15—C17 | 110.30 (11) |
| C1—C6—C7 | 122.71 (10) | C18—C15—C2 | 111.19 (10) |
| N1—C7—C6 | 121.60 (9) | C16—C15—C2 | 108.99 (9) |
| N1—C7—H7A | 119.2 | C17—C15—C2 | 111.55 (9) |
| C6—C7—H7A | 119.2 | C15—C16—H16A | 109.5 |
| N3—C8—N2 | 116.29 (9) | C15—C16—H16B | 109.5 |
| N3—C8—S1 | 123.94 (8) | H16A—C16—H16B | 109.5 |
| N2—C8—S1 | 119.70 (8) | C15—C16—H16C | 109.5 |
| N3—C9—C14 | 108.55 (9) | H16A—C16—H16C | 109.5 |
| N3—C9—C10 | 111.09 (9) | H16B—C16—H16C | 109.5 |
| C14—C9—C10 | 111.20 (9) | C15—C17—H17A | 109.5 |
| N3—C9—H9A | 108.6 | C15—C17—H17B | 109.5 |
| C14—C9—H9A | 108.6 | H17A—C17—H17B | 109.5 |
| C10—C9—H9A | 108.6 | C15—C17—H17C | 109.5 |
| C9—C10—C11 | 110.87 (9) | H17A—C17—H17C | 109.5 |
| C9—C10—H10A | 109.5 | H17B—C17—H17C | 109.5 |
| C11—C10—H10A | 109.5 | C15—C18—H18A | 109.5 |
| C9—C10—H10B | 109.5 | C15—C18—H18B | 109.5 |
| C11—C10—H10B | 109.5 | H18A—C18—H18B | 109.5 |
| H10A—C10—H10B | 108.1 | C15—C18—H18C | 109.5 |
| C12—C11—C10 | 111.50 (9) | H18A—C18—H18C | 109.5 |
| C12—C11—H11A | 109.3 | H18B—C18—H18C | 109.5 |
| C7—N1—N2—C8 | −170.08 (10) | C9—N3—C8—S1 | 6.94 (16) |
| O1—C1—C2—C3 | 179.54 (10) | N1—N2—C8—N3 | 12.50 (15) |
| C6—C1—C2—C3 | −0.44 (15) | N1—N2—C8—S1 | −170.46 (8) |
| O1—C1—C2—C15 | 0.70 (15) | C8—N3—C9—C14 | −159.15 (10) |
| C6—C1—C2—C15 | −179.27 (10) | C8—N3—C9—C10 | 78.28 (13) |
| C1—C2—C3—C4 | −0.95 (16) | N3—C9—C10—C11 | 177.21 (9) |
| C15—C2—C3—C4 | 177.88 (10) | C14—C9—C10—C11 | 56.19 (12) |
| C2—C3—C4—C5 | 0.87 (17) | C9—C10—C11—C12 | −55.62 (12) |
| C3—C4—C5—C6 | 0.64 (16) | C10—C11—C12—C13 | 55.03 (13) |
| C4—C5—C6—C1 | −1.98 (16) | C11—C12—C13—C14 | −55.10 (13) |
| C4—C5—C6—C7 | 176.29 (10) | N3—C9—C14—C13 | −178.71 (9) |
| O1—C1—C6—C5 | −178.09 (9) | C10—C9—C14—C13 | −56.20 (12) |
| C2—C1—C6—C5 | 1.89 (16) | C12—C13—C14—C9 | 55.70 (12) |
| O1—C1—C6—C7 | 3.74 (16) | C3—C2—C15—C18 | 7.08 (15) |
| C2—C1—C6—C7 | −176.29 (10) | C1—C2—C15—C18 | −174.15 (10) |
| N2—N1—C7—C6 | −178.82 (9) | C3—C2—C15—C16 | −112.06 (12) |
| C5—C6—C7—N1 | −166.41 (10) | C1—C2—C15—C16 | 66.72 (14) |
| C1—C6—C7—N1 | 11.80 (16) | C3—C2—C15—C17 | 125.90 (12) |
| C9—N3—C8—N2 | −176.16 (10) | C1—C2—C15—C17 | −55.32 (14) |
| H··· | ||||
| O1—H1 | 0.834 (19) | 1.901 (19) | 2.6545 (12) | 149.6 (19) |
| C16—H16 | 0.98 | 2.46 | 3.0774 (16) | 121 |
| C17—H17 | 0.98 | 2.26 | 2.9101 (15) | 123 |
| N2—H1 | 0.833 (14) | 2.459 (14) | 3.2779 (11) | 165.6 (13) |