Literature DB >> 22719633

(2E)-2-(5-Bromo-2-hy-droxy-3-meth-oxy-benzyl-idene)-N-phenyl-hydrazine-carbo-thio-amide.

Jinsa Mary Jacob, M Sithambaresan, M R Prathapachandra Kurup.   

Abstract

The title compound, C(15)H(14)BrN(3)O(2)S, adopts an E,E conformation with respect to the azomethine and hydrazinic bonds and exists in the thio-amide form. The two rings in the mol-ecule are twisted away from each other, making a dihedral angle of 69.13 (13)°. In the crystal, mol-ecules are linked through pairs of N-H⋯O and O-H⋯S hydrogen bonds, leading to the formation of inversion dimers which are stacked along the a axis. Intra-molecular N-H⋯N, O-H⋯O and C-H⋯π inter-actions are also present.

Entities:  

Year:  2012        PMID: 22719633      PMCID: PMC3379435          DOI: 10.1107/S1600536812022520

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of hydrazinecarbothio­amide and its derivatives, see: Barber et al. (1992 ▶); Parrilha et al. (2011 ▶). For the synthesis, see: Joseph et al. (2006 ▶). For related structures, see: Dutta et al. (1997 ▶); Seena et al. (2006 ▶, 2008 ▶); Nisha et al. (2011 ▶); Jacob & Kurup (2012 ▶). For C=S and C=N double-bond lengths, see: Allen et al. (1987) ▶.

Experimental

Crystal data

C15H14BrN3O2S M = 380.26 Triclinic, a = 6.1046 (5) Å b = 11.0329 (8) Å c = 12.4303 (9) Å α = 101.175 (3)° β = 91.323 (2)° γ = 104.759 (2)° V = 791.91 (10) Å3 Z = 2 Mo Kα radiation μ = 2.74 mm−1 T = 296 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.399, T max = 0.504 11624 measured reflections 2774 independent reflections 2338 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.068 S = 1.01 2774 reflections 212 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812022520/fj2553sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022520/fj2553Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812022520/fj2553Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14BrN3O2SZ = 2
Mr = 380.26F(000) = 384.0
Triclinic, P1Dx = 1.595 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.1046 (5) ÅCell parameters from 4882 reflections
b = 11.0329 (8) Åθ = 2.8–25.9°
c = 12.4303 (9) ŵ = 2.74 mm1
α = 101.175 (3)°T = 296 K
β = 91.323 (2)°Block, yellow
γ = 104.759 (2)°0.35 × 0.30 × 0.25 mm
V = 791.91 (10) Å3
Bruker Kappa APEXII CCD diffractometer2774 independent reflections
Radiation source: fine-focus sealed tube2338 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
Detector resolution: 8.33 pixels mm-1θmax = 25.0°, θmin = 2.8°
ω and φ scanh = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −13→13
Tmin = 0.399, Tmax = 0.504l = −14→14
11624 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.068H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0256P)2 + 0.4209P] where P = (Fo2 + 2Fc2)/3
2774 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.40 e Å3
3 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br11.28630 (5)0.08118 (3)0.45166 (3)0.05852 (12)
S10.16123 (11)0.32832 (7)0.12714 (5)0.05073 (19)
O11.1158 (3)0.42448 (18)0.77355 (13)0.0518 (5)
O20.8043 (3)0.47160 (18)0.65009 (14)0.0457 (4)
N10.6514 (3)0.31281 (18)0.32779 (15)0.0366 (5)
N20.4670 (4)0.3403 (2)0.28201 (16)0.0416 (5)
N30.5318 (4)0.2386 (2)0.11374 (17)0.0454 (5)
C10.9885 (4)0.2399 (2)0.44657 (19)0.0373 (5)
H10.95940.20040.37260.045*
C21.1446 (4)0.2114 (2)0.5112 (2)0.0391 (6)
C31.1985 (4)0.2702 (2)0.6213 (2)0.0421 (6)
H31.30790.25030.66290.051*
C41.0856 (4)0.3588 (2)0.66732 (19)0.0380 (5)
C50.9203 (4)0.3875 (2)0.60356 (19)0.0347 (5)
C60.8726 (4)0.3296 (2)0.49340 (18)0.0330 (5)
C70.6955 (4)0.3582 (2)0.43026 (18)0.0364 (5)
H70.61190.41140.46600.044*
C80.3980 (4)0.2983 (2)0.17484 (19)0.0372 (5)
C90.4879 (4)0.1782 (2)0.00017 (19)0.0389 (6)
C100.2884 (5)0.0890 (3)−0.0380 (2)0.0575 (8)
H100.17700.06830.01010.069*
C110.2513 (5)0.0295 (3)−0.1473 (2)0.0637 (8)
H110.1133−0.0299−0.17280.076*
C120.4137 (5)0.0565 (3)−0.2185 (2)0.0577 (8)
H120.38830.0155−0.29220.069*
C130.6148 (6)0.1446 (4)−0.1802 (2)0.0722 (10)
H130.72740.1633−0.22820.087*
C140.6525 (5)0.2064 (3)−0.0708 (2)0.0616 (8)
H140.78930.2669−0.04560.074*
C151.2722 (5)0.3963 (3)0.8467 (2)0.0618 (8)
H15A1.22410.30730.85000.093*
H15B1.27610.44770.91880.093*
H15C1.42110.41500.82030.093*
H3'0.653 (3)0.240 (3)0.146 (2)0.055 (8)*
H20.389 (4)0.380 (2)0.3232 (19)0.046 (8)*
H2'0.856 (5)0.507 (3)0.7130 (17)0.072 (10)*
U11U22U33U12U13U23
Br10.0572 (2)0.05035 (17)0.0776 (2)0.03025 (13)0.01961 (15)0.01303 (14)
S10.0438 (4)0.0760 (5)0.0333 (3)0.0295 (3)−0.0088 (3)−0.0032 (3)
O10.0632 (12)0.0653 (12)0.0328 (9)0.0318 (9)−0.0119 (8)0.0058 (9)
O20.0525 (11)0.0583 (11)0.0301 (9)0.0324 (9)−0.0068 (8)−0.0039 (8)
N10.0374 (11)0.0452 (11)0.0296 (11)0.0165 (9)−0.0017 (8)0.0066 (9)
N20.0406 (12)0.0588 (13)0.0292 (11)0.0268 (10)−0.0020 (9)0.0006 (10)
N30.0448 (13)0.0649 (14)0.0293 (11)0.0278 (11)−0.0056 (10)0.0002 (10)
C10.0396 (14)0.0383 (13)0.0334 (13)0.0114 (10)0.0044 (11)0.0045 (11)
C20.0381 (13)0.0375 (13)0.0467 (15)0.0172 (10)0.0074 (11)0.0104 (11)
C30.0392 (14)0.0457 (14)0.0469 (15)0.0167 (11)−0.0028 (11)0.0156 (12)
C40.0415 (14)0.0429 (13)0.0308 (13)0.0129 (11)−0.0038 (10)0.0090 (11)
C50.0345 (13)0.0379 (12)0.0343 (13)0.0145 (10)0.0015 (10)0.0075 (10)
C60.0315 (12)0.0378 (12)0.0308 (12)0.0112 (10)0.0003 (10)0.0072 (10)
C70.0389 (13)0.0415 (13)0.0296 (12)0.0162 (10)−0.0015 (10)0.0026 (10)
C80.0397 (14)0.0424 (13)0.0292 (12)0.0135 (11)−0.0024 (10)0.0036 (10)
C90.0459 (15)0.0467 (14)0.0287 (12)0.0245 (12)−0.0014 (11)0.0027 (11)
C100.0643 (19)0.0545 (17)0.0432 (16)0.0037 (14)0.0135 (14)−0.0002 (14)
C110.066 (2)0.0541 (17)0.0534 (18)0.0012 (15)0.0036 (16)−0.0103 (15)
C120.070 (2)0.0685 (19)0.0329 (14)0.0286 (16)−0.0015 (14)−0.0053 (13)
C130.059 (2)0.112 (3)0.0384 (16)0.0219 (19)0.0125 (14)−0.0017 (17)
C140.0383 (15)0.092 (2)0.0448 (16)0.0143 (15)−0.0023 (13)−0.0035 (16)
C150.076 (2)0.0678 (19)0.0430 (16)0.0209 (16)−0.0209 (15)0.0144 (14)
Br1—C21.900 (2)C4—C51.404 (3)
S1—C81.682 (2)C5—C61.384 (3)
O1—C41.361 (3)C6—C71.454 (3)
O1—C151.434 (3)C7—H70.9300
O2—C51.358 (3)C9—C101.363 (4)
O2—H2'0.819 (18)C9—C141.369 (4)
N1—C71.270 (3)C10—C111.376 (4)
N1—N21.376 (3)C10—H100.9300
N2—C81.342 (3)C11—C121.359 (4)
N2—H20.843 (17)C11—H110.9300
N3—C81.337 (3)C12—C131.365 (4)
N3—C91.427 (3)C12—H120.9300
N3—H3'0.830 (17)C13—C141.383 (4)
C1—C21.366 (3)C13—H130.9300
C1—C61.404 (3)C14—H140.9300
C1—H10.9300C15—H15A0.9600
C2—C31.389 (3)C15—H15B0.9600
C3—C41.379 (3)C15—H15C0.9600
C3—H30.9300
C4—O1—C15117.7 (2)C6—C7—H7119.0
C5—O2—H2'112 (2)N3—C8—N2115.7 (2)
C7—N1—N2114.91 (19)N3—C8—S1125.34 (18)
C8—N2—N1122.0 (2)N2—C8—S1118.95 (18)
C8—N2—H2118.8 (18)C10—C9—C14119.4 (2)
N1—N2—H2119.1 (18)C10—C9—N3121.1 (2)
C8—N3—C9126.3 (2)C14—C9—N3119.4 (2)
C8—N3—H3'115 (2)C9—C10—C11120.3 (3)
C9—N3—H3'118 (2)C9—C10—H10119.9
C2—C1—C6119.1 (2)C11—C10—H10119.9
C2—C1—H1120.4C12—C11—C10120.8 (3)
C6—C1—H1120.4C12—C11—H11119.6
C1—C2—C3122.6 (2)C10—C11—H11119.6
C1—C2—Br1119.52 (18)C11—C12—C13119.0 (3)
C3—C2—Br1117.78 (17)C11—C12—H12120.5
C4—C3—C2118.3 (2)C13—C12—H12120.5
C4—C3—H3120.8C12—C13—C14120.6 (3)
C2—C3—H3120.8C12—C13—H13119.7
O1—C4—C3126.1 (2)C14—C13—H13119.7
O1—C4—C5113.7 (2)C9—C14—C13119.8 (3)
C3—C4—C5120.2 (2)C9—C14—H14120.1
O2—C5—C6119.51 (19)C13—C14—H14120.1
O2—C5—C4120.0 (2)O1—C15—H15A109.5
C6—C5—C4120.5 (2)O1—C15—H15B109.5
C5—C6—C1119.2 (2)H15A—C15—H15B109.5
C5—C6—C7119.2 (2)O1—C15—H15C109.5
C1—C6—C7121.5 (2)H15A—C15—H15C109.5
N1—C7—C6122.1 (2)H15B—C15—H15C109.5
N1—C7—H7119.0
C7—N1—N2—C8−179.5 (2)C2—C1—C6—C7−176.4 (2)
C6—C1—C2—C3−1.7 (4)N2—N1—C7—C6174.8 (2)
C6—C1—C2—Br1175.39 (17)C5—C6—C7—N1176.6 (2)
C1—C2—C3—C41.4 (4)C1—C6—C7—N1−6.6 (4)
Br1—C2—C3—C4−175.76 (18)C9—N3—C8—N2175.5 (2)
C15—O1—C4—C3−2.7 (4)C9—N3—C8—S1−6.8 (4)
C15—O1—C4—C5176.6 (2)N1—N2—C8—N3−5.9 (4)
C2—C3—C4—O1179.5 (2)N1—N2—C8—S1176.19 (18)
C2—C3—C4—C50.2 (4)C8—N3—C9—C10−52.8 (4)
O1—C4—C5—O2−1.6 (3)C8—N3—C9—C14129.9 (3)
C3—C4—C5—O2177.8 (2)C14—C9—C10—C11−1.2 (4)
O1—C4—C5—C6179.1 (2)N3—C9—C10—C11−178.4 (3)
C3—C4—C5—C6−1.5 (4)C9—C10—C11—C121.4 (5)
O2—C5—C6—C1−178.2 (2)C10—C11—C12—C13−0.5 (5)
C4—C5—C6—C11.2 (4)C11—C12—C13—C14−0.4 (5)
O2—C5—C6—C7−1.2 (3)C10—C9—C14—C130.2 (4)
C4—C5—C6—C7178.1 (2)N3—C9—C14—C13177.5 (3)
C2—C1—C6—C50.4 (3)C12—C13—C14—C90.6 (5)
D—H···AD—HH···AD···AD—H···A
N3—H3′···N10.83 (2)2.25 (3)2.654 (3)110 (2)
N2—H2···O2i0.84 (2)2.23 (2)2.983 (3)149 (2)
O2—H2′···O10.82 (2)2.20 (3)2.631 (2)113 (3)
O2—H2′···S1i0.82 (2)2.44 (2)3.1547 (18)146 (3)
C15—H15A···Cg2ii0.962.903.649 (3)135
C7—H7···O20.932.442.764 (3)101
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C9–C14 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3′⋯N10.83 (2)2.25 (3)2.654 (3)110 (2)
N2—H2⋯O2i0.84 (2)2.23 (2)2.983 (3)149 (2)
O2—H2′⋯O10.82 (2)2.20 (3)2.631 (2)113 (3)
O2—H2′⋯S1i0.82 (2)2.44 (2)3.1547 (18)146 (3)
C15—H15ACg2ii0.962.903.649 (3)135

Symmetry codes: (i) ; (ii) .

  4 in total

1.  (E)-2-(4-Benz-yloxy-2-hy-droxy-benzyl-idene)-N-phenyl-hydrazinecarbothio-amide.

Authors:  K Nisha; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-25

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Pyridine-derived thiosemicarbazones and their tin(IV) complexes with antifungal activity against Candida spp.

Authors:  Gabrieli L Parrilha; Jeferson G da Silva; Ludmila F Gouveia; Alan K Gasparoto; Roberta P Dias; Willian R Rocha; Daniel A Santos; Nivaldo L Speziali; Heloisa Beraldo
Journal:  Eur J Med Chem       Date:  2011-02-25       Impact factor: 6.514

4.  (2E)-2-(5-Bromo-2-hy-droxy-3-meth-oxy-benzyl-idene)-N-cyclo-hexyl-hydrazine-carbothio-amide.

Authors:  Jinsa Mary Jacob; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.