Literature DB >> 22412488

tert-Butyl 2-(1H-benzimidazol-1-yl)acetate.

Nassir N Al-Mohammed1, Yatimah Alias, Zanariah Abdullah, Hamid Khaledi.   

Abstract

In the title compound, C(13)H(16)N(2)O(2), the planes of the benzimidazole ring system and the acetate O-C=O fragment make a dihedral angle of 84.5 (3)°. In the crystal, mol-ecules are connected through C-H⋯N hydrogen bonds to form infinite chains in the [-110] direction.

Entities:  

Year:  2012        PMID: 22412488      PMCID: PMC3297298          DOI: 10.1107/S1600536812002814

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Al-Mohammed et al. (2012 ▶); Fu et al. (2009 ▶); Xu et al. (2008 ▶).

Experimental

Crystal data

C13H16N2O2 M = 232.28 Monoclinic, a = 5.4204 (2) Å b = 11.3319 (4) Å c = 19.8771 (7) Å β = 96.609 (3)° V = 1212.81 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.19 × 0.13 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.984, T max = 0.997 3829 measured reflections 1244 independent reflections 1091 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.076 S = 1.04 1244 reflections 157 parameters 2 restraints H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812002814/gk2453sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002814/gk2453Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812002814/gk2453Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16N2O2F(000) = 496
Mr = 232.28Dx = 1.272 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 1057 reflections
a = 5.4204 (2) Åθ = 3.6–26.4°
b = 11.3319 (4) ŵ = 0.09 mm1
c = 19.8771 (7) ÅT = 100 K
β = 96.609 (3)°Tablet, colourless
V = 1212.81 (8) Å30.19 × 0.13 × 0.04 mm
Z = 4
Bruker APEXII CCD diffractometer1244 independent reflections
Radiation source: fine-focus sealed tube1091 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
φ and ω scansθmax = 26.5°, θmin = 3.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.984, Tmax = 0.997k = −14→14
3829 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0394P)2 + 0.180P] where P = (Fo2 + 2Fc2)/3
1244 reflections(Δ/σ)max < 0.001
157 parametersΔρmax = 0.17 e Å3
2 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.0330 (4)0.41863 (16)0.04890 (10)0.0302 (5)
O20.2082 (3)0.59850 (13)0.07085 (9)0.0174 (4)
N10.3020 (3)0.38525 (17)−0.05825 (10)0.0193 (5)
N20.3571 (4)0.19170 (18)−0.07541 (12)0.0243 (5)
C10.4419 (5)0.2870 (2)−0.04255 (14)0.0227 (6)
H10.58710.2872−0.01080.027*
C20.1057 (4)0.3507 (2)−0.10483 (12)0.0183 (5)
C3−0.0961 (4)0.4127 (2)−0.13641 (13)0.0222 (6)
H3−0.11950.4943−0.12820.027*
C4−0.2609 (5)0.3489 (2)−0.18058 (14)0.0250 (6)
H4−0.40140.3879−0.20350.030*
C5−0.2268 (5)0.2281 (2)−0.19258 (13)0.0228 (6)
H5−0.34460.1872−0.22320.027*
C6−0.0250 (5)0.1677 (2)−0.16060 (14)0.0225 (6)
H6−0.00190.0862−0.16900.027*
C70.1446 (4)0.2301 (2)−0.11554 (13)0.0192 (5)
C80.3234 (4)0.4973 (2)−0.02268 (13)0.0183 (5)
H8A0.26710.5617−0.05440.022*
H8B0.49970.5119−0.00560.022*
C90.1684 (4)0.4977 (2)0.03638 (13)0.0187 (5)
C100.0928 (4)0.6199 (2)0.13424 (13)0.0200 (5)
C110.1856 (5)0.5282 (2)0.18666 (14)0.0264 (6)
H11A0.11990.45050.17220.040*
H11B0.12930.54870.23030.040*
H11C0.36750.52600.19140.040*
C120.1849 (5)0.7429 (2)0.15475 (15)0.0256 (6)
H12A0.36680.74320.16120.038*
H12B0.12140.76550.19710.038*
H12C0.12570.79920.11910.038*
C13−0.1878 (5)0.6198 (2)0.11925 (15)0.0271 (6)
H13A−0.23800.67430.08190.041*
H13B−0.26160.64510.15960.041*
H13C−0.24540.54000.10650.041*
U11U22U33U12U13U23
O10.0402 (11)0.0241 (10)0.0279 (11)−0.0125 (8)0.0109 (9)−0.0047 (9)
O20.0196 (9)0.0158 (8)0.0172 (9)0.0005 (7)0.0035 (7)−0.0026 (7)
N10.0221 (11)0.0165 (10)0.0191 (12)0.0029 (8)0.0013 (9)−0.0011 (9)
N20.0288 (12)0.0191 (11)0.0239 (12)0.0041 (9)−0.0013 (10)−0.0012 (10)
C10.0253 (14)0.0225 (13)0.0196 (13)0.0059 (11)0.0001 (11)−0.0002 (11)
C20.0214 (13)0.0185 (12)0.0153 (14)0.0003 (10)0.0037 (10)−0.0018 (10)
C30.0249 (14)0.0187 (12)0.0224 (14)0.0045 (10)0.0001 (11)−0.0023 (11)
C40.0273 (14)0.0250 (14)0.0221 (15)0.0067 (11)0.0008 (12)−0.0008 (11)
C50.0266 (14)0.0251 (14)0.0163 (13)0.0001 (11)−0.0001 (11)−0.0051 (11)
C60.0317 (15)0.0164 (12)0.0197 (14)0.0010 (10)0.0045 (11)−0.0024 (10)
C70.0242 (14)0.0186 (12)0.0148 (13)0.0031 (10)0.0022 (10)−0.0004 (10)
C80.0205 (12)0.0176 (12)0.0167 (13)−0.0013 (10)0.0019 (10)−0.0030 (10)
C90.0210 (12)0.0180 (12)0.0163 (13)0.0017 (10)−0.0011 (10)0.0007 (10)
C100.0188 (13)0.0264 (13)0.0152 (13)−0.0015 (10)0.0036 (10)−0.0033 (11)
C110.0268 (14)0.0341 (14)0.0180 (13)−0.0007 (12)0.0016 (11)0.0008 (12)
C120.0255 (13)0.0250 (12)0.0273 (15)−0.0010 (11)0.0071 (11)−0.0092 (12)
C130.0167 (13)0.0394 (15)0.0255 (15)−0.0004 (11)0.0031 (11)−0.0029 (13)
O1—C91.203 (3)C6—C71.399 (4)
O2—C91.336 (3)C6—H60.9500
O2—C101.490 (3)C8—C91.520 (3)
N1—C11.363 (3)C8—H8A0.9900
N1—C21.384 (3)C8—H8B0.9900
N1—C81.451 (3)C10—C111.516 (4)
N2—C11.317 (3)C10—C131.516 (3)
N2—C71.394 (3)C10—C121.520 (4)
C1—H10.9500C11—H11A0.9800
C2—C31.388 (3)C11—H11B0.9800
C2—C71.402 (3)C11—H11C0.9800
C3—C41.383 (4)C12—H12A0.9800
C3—H30.9500C12—H12B0.9800
C4—C51.406 (4)C12—H12C0.9800
C4—H40.9500C13—H13A0.9800
C5—C61.382 (4)C13—H13B0.9800
C5—H50.9500C13—H13C0.9800
C9—O2—C10120.91 (18)C9—C8—H8B109.4
C1—N1—C2106.6 (2)H8A—C8—H8B108.0
C1—N1—C8126.3 (2)O1—C9—O2126.7 (2)
C2—N1—C8125.84 (19)O1—C9—C8124.2 (2)
C1—N2—C7104.24 (19)O2—C9—C8109.14 (18)
N2—C1—N1113.8 (2)O2—C10—C11109.36 (19)
N2—C1—H1123.1O2—C10—C13110.1 (2)
N1—C1—H1123.1C11—C10—C13112.4 (2)
N1—C2—C3131.6 (2)O2—C10—C12102.64 (19)
N1—C2—C7105.1 (2)C11—C10—C12111.8 (2)
C3—C2—C7123.3 (2)C13—C10—C12110.1 (2)
C4—C3—C2116.1 (2)C10—C11—H11A109.5
C4—C3—H3121.9C10—C11—H11B109.5
C2—C3—H3121.9H11A—C11—H11B109.5
C3—C4—C5122.0 (2)C10—C11—H11C109.5
C3—C4—H4119.0H11A—C11—H11C109.5
C5—C4—H4119.0H11B—C11—H11C109.5
C6—C5—C4121.1 (2)C10—C12—H12A109.5
C6—C5—H5119.5C10—C12—H12B109.5
C4—C5—H5119.5H12A—C12—H12B109.5
C5—C6—C7118.2 (2)C10—C12—H12C109.5
C5—C6—H6120.9H12A—C12—H12C109.5
C7—C6—H6120.9H12B—C12—H12C109.5
N2—C7—C6130.4 (2)C10—C13—H13A109.5
N2—C7—C2110.3 (2)C10—C13—H13B109.5
C6—C7—C2119.4 (2)H13A—C13—H13B109.5
N1—C8—C9111.03 (18)C10—C13—H13C109.5
N1—C8—H8A109.4H13A—C13—H13C109.5
C9—C8—H8A109.4H13B—C13—H13C109.5
N1—C8—H8B109.4
D—H···AD—HH···AD···AD—H···A
C11—H11A···O10.982.473.033 (3)116
C13—H13C···O10.982.422.995 (3)117
C3—H3···N2i0.952.483.406 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯N2i0.952.483.406 (3)165

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 2-(2-methyl-1H-benzimidazol-1-yl)acetate.

Authors:  Guang-Hai Xu; Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23

3.  Ethyl (E)-1-(2-styryl-1H-benzimidazol-1-yl)acetate.

Authors:  Xue-Qun Fu; Guang-Hai Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-10

4.  tert-Butyl 2-(1H-imidazol-1-yl)acetate.

Authors:  Nassir N Al-Mohammed; Yatimah Alias; Zanariah Abdullah; Hamid Khaledi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-18
  4 in total
  1 in total

1.  Dimethyl 2,2'-[2,2'-bi(1H-1,3-benzimidazole)-1,1'-di-yl]diacetate.

Authors:  Huai-Ling Guo; Jia-Cheng Liu; Chao-Hu Xiao; Ting Pang; Ping Cao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-21
  1 in total

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