| Literature DB >> 21201788 |
Abstract
A new benzimidazole compound, C(12)H(14)N(2)O(2), has been synthesized by the reaction of 2-methyl-1H-benzimidazole and ethyl 2-bromo-acetate. In the crystal structure, weak inter-molecular C-H⋯N hydrogen bonds link the mol-ecules into chains. π⋯π Contacts (centroid⋯centroid distance = 3.713 Å) are observed. A C-H⋯π inter-action is also present. The N-C-C-O torsion angle is 178.4 (2)°.Entities:
Year: 2008 PMID: 21201788 PMCID: PMC2960733 DOI: 10.1107/S160053680802672X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H14N2O2 | |
| Monoclinic, | Mo |
| Hall symbol: P -2yac | Cell parameters from 6060 reflections |
| θ = 6.4–55.1º | |
| µ = 0.09 mm−1 | |
| β = 111.42 (3)º | Prism, colorless |
| 0.2 × 0.1 × 0.1 mm | |
| Rigaku SCXmini diffractometer | 1323 independent reflections |
| Radiation source: fine-focus sealed tube | 1085 reflections with |
| Monochromator: graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5º |
| θmin = 3.2º | |
| CCD_Profile_fitting scans | |
| Absorption correction: multi-scan(CrystalClear; Rigaku, 2005) | |
| 5696 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 1323 reflections | Δρmax = 0.10 e Å−3 |
| 145 parameters | Δρmin = −0.15 e Å−3 |
| 2 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O2 | 0.14135 (17) | 0.1457 (4) | 0.20123 (14) | 0.0515 (5) | |
| C5 | 0.1006 (3) | −0.1654 (5) | −0.2701 (2) | 0.0449 (6) | |
| C1 | 0.3029 (2) | −0.2567 (6) | −0.0948 (2) | 0.0471 (6) | |
| H1A | 0.3572 | −0.2219 | −0.0148 | 0.056* | |
| N2 | 0.12080 (19) | 0.0836 (4) | −0.10788 (17) | 0.0412 (5) | |
| C10 | 0.1019 (2) | 0.0363 (5) | 0.0906 (2) | 0.0413 (5) | |
| C9 | 0.1639 (2) | 0.1907 (6) | 0.0146 (2) | 0.0425 (6) | |
| H9A | 0.1409 | 0.3867 | 0.0121 | 0.051* | |
| H9B | 0.2594 | 0.1753 | 0.0518 | 0.051* | |
| N1 | −0.0107 (2) | 0.0004 (5) | −0.30007 (18) | 0.0497 (6) | |
| O1 | 0.0293 (2) | −0.1587 (4) | 0.05777 (18) | 0.0685 (6) | |
| C4 | 0.1383 (3) | −0.3615 (6) | −0.3381 (2) | 0.0576 (8) | |
| H4A | 0.0850 | −0.3960 | −0.4184 | 0.069* | |
| C6 | 0.1845 (2) | −0.1163 (5) | −0.1499 (2) | 0.0390 (6) | |
| C7 | 0.0038 (2) | 0.1447 (5) | −0.2017 (2) | 0.0454 (6) | |
| C2 | 0.3361 (3) | −0.4510 (7) | −0.1649 (2) | 0.0540 (7) | |
| H2A | 0.4147 | −0.5501 | −0.1311 | 0.065* | |
| C3 | 0.2550 (3) | −0.5027 (7) | −0.2850 (3) | 0.0596 (7) | |
| H3A | 0.2805 | −0.6350 | −0.3296 | 0.072* | |
| C12 | 0.1640 (3) | 0.1400 (8) | 0.4080 (3) | 0.0737 (10) | |
| H12A | 0.1322 | 0.0602 | 0.4666 | 0.111* | |
| H12B | 0.1510 | 0.3383 | 0.4051 | 0.111* | |
| H12C | 0.2565 | 0.0999 | 0.4306 | 0.111* | |
| C8 | −0.0919 (3) | 0.3503 (6) | −0.1883 (3) | 0.0598 (8) | |
| H8A | −0.1666 | 0.3635 | −0.2632 | 0.090* | |
| H8B | −0.0500 | 0.5293 | −0.1683 | 0.090* | |
| H8C | −0.1212 | 0.2914 | −0.1248 | 0.090* | |
| C11 | 0.0894 (3) | 0.0179 (7) | 0.2857 (3) | 0.0617 (8) | |
| H11A | 0.1016 | −0.1826 | 0.2873 | 0.074* | |
| H11B | −0.0044 | 0.0568 | 0.2617 | 0.074* |
| O2 | 0.0623 (12) | 0.0550 (11) | 0.0392 (10) | −0.0084 (9) | 0.0209 (9) | −0.0061 (8) |
| C5 | 0.0512 (15) | 0.0505 (15) | 0.0271 (11) | −0.0146 (12) | 0.0075 (11) | 0.0011 (11) |
| C1 | 0.0448 (14) | 0.0577 (16) | 0.0327 (12) | −0.0087 (12) | 0.0070 (10) | −0.0014 (12) |
| N2 | 0.0423 (11) | 0.0447 (12) | 0.0312 (10) | −0.0065 (9) | 0.0069 (8) | −0.0003 (9) |
| C10 | 0.0419 (13) | 0.0418 (13) | 0.0383 (13) | 0.0019 (11) | 0.0126 (10) | −0.0012 (11) |
| C9 | 0.0452 (14) | 0.0437 (15) | 0.0345 (12) | −0.0095 (11) | 0.0095 (10) | −0.0074 (10) |
| N1 | 0.0493 (12) | 0.0502 (13) | 0.0363 (12) | −0.0092 (11) | 0.0000 (9) | 0.0043 (10) |
| O1 | 0.0865 (15) | 0.0659 (14) | 0.0564 (12) | −0.0334 (12) | 0.0301 (11) | −0.0148 (10) |
| C4 | 0.0744 (19) | 0.0620 (18) | 0.0291 (13) | −0.0186 (16) | 0.0102 (13) | −0.0110 (13) |
| C6 | 0.0432 (13) | 0.0434 (14) | 0.0283 (12) | −0.0123 (11) | 0.0104 (10) | 0.0010 (10) |
| C7 | 0.0426 (14) | 0.0450 (14) | 0.0395 (14) | −0.0087 (12) | 0.0041 (11) | 0.0077 (11) |
| C2 | 0.0499 (15) | 0.0627 (19) | 0.0483 (17) | 0.0003 (14) | 0.0166 (13) | −0.0013 (14) |
| C3 | 0.0726 (19) | 0.0613 (18) | 0.0468 (17) | −0.0082 (15) | 0.0242 (15) | −0.0129 (14) |
| C12 | 0.083 (2) | 0.095 (3) | 0.0472 (17) | 0.0068 (19) | 0.0283 (16) | 0.0017 (17) |
| C8 | 0.0515 (16) | 0.0546 (16) | 0.0659 (19) | 0.0001 (14) | 0.0127 (14) | 0.0089 (14) |
| C11 | 0.0716 (19) | 0.073 (2) | 0.0508 (18) | −0.0011 (16) | 0.0346 (15) | −0.0009 (15) |
| O2—C10 | 1.329 (3) | C4—C3 | 1.370 (5) |
| O2—C11 | 1.451 (3) | C4—H4A | 0.9300 |
| C5—N1 | 1.380 (4) | C7—C8 | 1.482 (4) |
| C5—C4 | 1.393 (4) | C2—C3 | 1.395 (4) |
| C5—C6 | 1.401 (3) | C2—H2A | 0.9300 |
| C1—C2 | 1.380 (4) | C3—H3A | 0.9300 |
| C1—C6 | 1.385 (4) | C12—C11 | 1.497 (4) |
| C1—H1A | 0.9300 | C12—H12A | 0.9600 |
| N2—C6 | 1.376 (3) | C12—H12B | 0.9600 |
| N2—C7 | 1.379 (3) | C12—H12C | 0.9600 |
| N2—C9 | 1.446 (3) | C8—H8A | 0.9600 |
| C10—O1 | 1.193 (3) | C8—H8B | 0.9600 |
| C10—C9 | 1.502 (3) | C8—H8C | 0.9600 |
| C9—H9A | 0.9700 | C11—H11A | 0.9700 |
| C9—H9B | 0.9700 | C11—H11B | 0.9700 |
| N1—C7 | 1.315 (3) | ||
| C10—O2—C11 | 116.5 (2) | N1—C7—C8 | 125.7 (2) |
| N1—C5—C4 | 130.8 (2) | N2—C7—C8 | 122.1 (2) |
| N1—C5—C6 | 110.3 (2) | C1—C2—C3 | 121.8 (3) |
| C4—C5—C6 | 118.8 (3) | C1—C2—H2A | 119.1 |
| C2—C1—C6 | 116.5 (2) | C3—C2—H2A | 119.1 |
| C2—C1—H1A | 121.7 | C4—C3—C2 | 120.9 (3) |
| C6—C1—H1A | 121.7 | C4—C3—H3A | 119.5 |
| C6—N2—C7 | 107.06 (19) | C2—C3—H3A | 119.5 |
| C6—N2—C9 | 126.07 (19) | C11—C12—H12A | 109.5 |
| C7—N2—C9 | 126.7 (2) | C11—C12—H12B | 109.5 |
| O1—C10—O2 | 124.6 (2) | H12A—C12—H12B | 109.5 |
| O1—C10—C9 | 125.3 (2) | C11—C12—H12C | 109.5 |
| O2—C10—C9 | 110.04 (19) | H12A—C12—H12C | 109.5 |
| N2—C9—C10 | 112.00 (19) | H12B—C12—H12C | 109.5 |
| N2—C9—H9A | 109.2 | C7—C8—H8A | 109.5 |
| C10—C9—H9A | 109.2 | C7—C8—H8B | 109.5 |
| N2—C9—H9B | 109.2 | H8A—C8—H8B | 109.5 |
| C10—C9—H9B | 109.2 | C7—C8—H8C | 109.5 |
| H9A—C9—H9B | 107.9 | H8A—C8—H8C | 109.5 |
| C7—N1—C5 | 105.4 (2) | H8B—C8—H8C | 109.5 |
| C3—C4—C5 | 119.0 (3) | O2—C11—C12 | 107.0 (3) |
| C3—C4—H4A | 120.5 | O2—C11—H11A | 110.3 |
| C5—C4—H4A | 120.5 | C12—C11—H11A | 110.3 |
| N2—C6—C1 | 132.1 (2) | O2—C11—H11B | 110.3 |
| N2—C6—C5 | 105.0 (2) | C12—C11—H11B | 110.3 |
| C1—C6—C5 | 122.9 (2) | H11A—C11—H11B | 108.6 |
| N1—C7—N2 | 112.2 (2) | ||
| C11—O2—C10—O1 | −1.1 (4) | C2—C1—C6—C5 | 0.2 (3) |
| C11—O2—C10—C9 | 180.0 (2) | N1—C5—C6—N2 | 0.1 (3) |
| C6—N2—C9—C10 | −93.6 (3) | C4—C5—C6—N2 | −179.8 (2) |
| C7—N2—C9—C10 | 80.8 (3) | N1—C5—C6—C1 | 179.1 (2) |
| O1—C10—C9—N2 | 2.6 (4) | C4—C5—C6—C1 | −0.8 (4) |
| O2—C10—C9—N2 | −178.4 (2) | C5—N1—C7—N2 | 0.6 (3) |
| C4—C5—N1—C7 | 179.5 (3) | C5—N1—C7—C8 | −179.1 (2) |
| C6—C5—N1—C7 | −0.4 (3) | C6—N2—C7—N1 | −0.6 (3) |
| N1—C5—C4—C3 | −179.0 (3) | C9—N2—C7—N1 | −175.9 (2) |
| C6—C5—C4—C3 | 0.9 (4) | C6—N2—C7—C8 | 179.1 (2) |
| C7—N2—C6—C1 | −178.6 (3) | C9—N2—C7—C8 | 3.9 (4) |
| C9—N2—C6—C1 | −3.3 (4) | C6—C1—C2—C3 | 0.2 (4) |
| C7—N2—C6—C5 | 0.3 (2) | C5—C4—C3—C2 | −0.5 (4) |
| C9—N2—C6—C5 | 175.6 (2) | C1—C2—C3—C4 | −0.1 (4) |
| C2—C1—C6—N2 | 179.0 (3) | C10—O2—C11—C12 | 170.5 (2) |
| H··· | ||||
| C9—H9B···N1i | 0.97 | 2.61 | 3.532 (3) | 159 |
| C8—H8C···Cg1ii | 0.97 | 2.74 | 3.633 (5) | 155 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C9—H9 | 0.97 | 2.61 | 3.532 (3) | 159 |
| C8—H8 | 0.97 | 2.74 | 3.633 (5) | 155 |
Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the imidazole ring.