Literature DB >> 21201788

Ethyl 2-(2-methyl-1H-benzimidazol-1-yl)acetate.

Guang-Hai Xu1, Wei Wang.   

Abstract

A new benzimidazole compound, C(12)H(14)N(2)O(2), has been synthesized by the reaction of 2-methyl-1H-benzimidazole and ethyl 2-bromo-acetate. In the crystal structure, weak inter-molecular C-H⋯N hydrogen bonds link the mol-ecules into chains. π⋯π Contacts (centroid⋯centroid distance = 3.713 Å) are observed. A C-H⋯π inter-action is also present. The N-C-C-O torsion angle is 178.4 (2)°.

Entities:  

Year:  2008        PMID: 21201788      PMCID: PMC2960733          DOI: 10.1107/S160053680802672X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Aaker et al. (2005 ▶).

Experimental

Crystal data

C12H14N2O2 M = 218.25 Monoclinic, a = 10.854 (2) Å b = 4.7959 (10) Å c = 11.842 (2) Å β = 111.42 (3)° V = 573.9 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 295 (2) K 0.2 × 0.1 × 0.1 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.990, T max = 1.000 (expected range = 0.981–0.991) 5696 measured reflections 1323 independent reflections 1085 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.089 S = 1.12 1323 reflections 145 parameters 2 restraints H-atom parameters constrained Δρmax = 0.10 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, New_Global_Publ_Block. DOI: 10.1107/S160053680802672X/wn2276sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680802672X/wn2276Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N2O2F000 = 232
Mr = 218.25Dx = 1.263 Mg m3
Monoclinic, PnMo Kα radiation λ = 0.71073 Å
Hall symbol: P -2yacCell parameters from 6060 reflections
a = 10.854 (2) Åθ = 6.4–55.1º
b = 4.7959 (10) ŵ = 0.09 mm1
c = 11.842 (2) ÅT = 295 (2) K
β = 111.42 (3)ºPrism, colorless
V = 573.9 (2) Å30.2 × 0.1 × 0.1 mm
Z = 2
Rigaku SCXmini diffractometer1323 independent reflections
Radiation source: fine-focus sealed tube1085 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.033
Detector resolution: 13.6612 pixels mm-1θmax = 27.5º
T = 294(2) Kθmin = 3.2º
CCD_Profile_fitting scansh = −14→14
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −6→6
Tmin = 0.990, Tmax = 1.000l = −15→15
5696 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.090  w = 1/[σ2(Fo2) + (0.0435P)2 + 0.018P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
1323 reflectionsΔρmax = 0.10 e Å3
145 parametersΔρmin = −0.15 e Å3
2 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.14135 (17)0.1457 (4)0.20123 (14)0.0515 (5)
C50.1006 (3)−0.1654 (5)−0.2701 (2)0.0449 (6)
C10.3029 (2)−0.2567 (6)−0.0948 (2)0.0471 (6)
H1A0.3572−0.2219−0.01480.056*
N20.12080 (19)0.0836 (4)−0.10788 (17)0.0412 (5)
C100.1019 (2)0.0363 (5)0.0906 (2)0.0413 (5)
C90.1639 (2)0.1907 (6)0.0146 (2)0.0425 (6)
H9A0.14090.38670.01210.051*
H9B0.25940.17530.05180.051*
N1−0.0107 (2)0.0004 (5)−0.30007 (18)0.0497 (6)
O10.0293 (2)−0.1587 (4)0.05777 (18)0.0685 (6)
C40.1383 (3)−0.3615 (6)−0.3381 (2)0.0576 (8)
H4A0.0850−0.3960−0.41840.069*
C60.1845 (2)−0.1163 (5)−0.1499 (2)0.0390 (6)
C70.0038 (2)0.1447 (5)−0.2017 (2)0.0454 (6)
C20.3361 (3)−0.4510 (7)−0.1649 (2)0.0540 (7)
H2A0.4147−0.5501−0.13110.065*
C30.2550 (3)−0.5027 (7)−0.2850 (3)0.0596 (7)
H3A0.2805−0.6350−0.32960.072*
C120.1640 (3)0.1400 (8)0.4080 (3)0.0737 (10)
H12A0.13220.06020.46660.111*
H12B0.15100.33830.40510.111*
H12C0.25650.09990.43060.111*
C8−0.0919 (3)0.3503 (6)−0.1883 (3)0.0598 (8)
H8A−0.16660.3635−0.26320.090*
H8B−0.05000.5293−0.16830.090*
H8C−0.12120.2914−0.12480.090*
C110.0894 (3)0.0179 (7)0.2857 (3)0.0617 (8)
H11A0.1016−0.18260.28730.074*
H11B−0.00440.05680.26170.074*
U11U22U33U12U13U23
O20.0623 (12)0.0550 (11)0.0392 (10)−0.0084 (9)0.0209 (9)−0.0061 (8)
C50.0512 (15)0.0505 (15)0.0271 (11)−0.0146 (12)0.0075 (11)0.0011 (11)
C10.0448 (14)0.0577 (16)0.0327 (12)−0.0087 (12)0.0070 (10)−0.0014 (12)
N20.0423 (11)0.0447 (12)0.0312 (10)−0.0065 (9)0.0069 (8)−0.0003 (9)
C100.0419 (13)0.0418 (13)0.0383 (13)0.0019 (11)0.0126 (10)−0.0012 (11)
C90.0452 (14)0.0437 (15)0.0345 (12)−0.0095 (11)0.0095 (10)−0.0074 (10)
N10.0493 (12)0.0502 (13)0.0363 (12)−0.0092 (11)0.0000 (9)0.0043 (10)
O10.0865 (15)0.0659 (14)0.0564 (12)−0.0334 (12)0.0301 (11)−0.0148 (10)
C40.0744 (19)0.0620 (18)0.0291 (13)−0.0186 (16)0.0102 (13)−0.0110 (13)
C60.0432 (13)0.0434 (14)0.0283 (12)−0.0123 (11)0.0104 (10)0.0010 (10)
C70.0426 (14)0.0450 (14)0.0395 (14)−0.0087 (12)0.0041 (11)0.0077 (11)
C20.0499 (15)0.0627 (19)0.0483 (17)0.0003 (14)0.0166 (13)−0.0013 (14)
C30.0726 (19)0.0613 (18)0.0468 (17)−0.0082 (15)0.0242 (15)−0.0129 (14)
C120.083 (2)0.095 (3)0.0472 (17)0.0068 (19)0.0283 (16)0.0017 (17)
C80.0515 (16)0.0546 (16)0.0659 (19)0.0001 (14)0.0127 (14)0.0089 (14)
C110.0716 (19)0.073 (2)0.0508 (18)−0.0011 (16)0.0346 (15)−0.0009 (15)
O2—C101.329 (3)C4—C31.370 (5)
O2—C111.451 (3)C4—H4A0.9300
C5—N11.380 (4)C7—C81.482 (4)
C5—C41.393 (4)C2—C31.395 (4)
C5—C61.401 (3)C2—H2A0.9300
C1—C21.380 (4)C3—H3A0.9300
C1—C61.385 (4)C12—C111.497 (4)
C1—H1A0.9300C12—H12A0.9600
N2—C61.376 (3)C12—H12B0.9600
N2—C71.379 (3)C12—H12C0.9600
N2—C91.446 (3)C8—H8A0.9600
C10—O11.193 (3)C8—H8B0.9600
C10—C91.502 (3)C8—H8C0.9600
C9—H9A0.9700C11—H11A0.9700
C9—H9B0.9700C11—H11B0.9700
N1—C71.315 (3)
C10—O2—C11116.5 (2)N1—C7—C8125.7 (2)
N1—C5—C4130.8 (2)N2—C7—C8122.1 (2)
N1—C5—C6110.3 (2)C1—C2—C3121.8 (3)
C4—C5—C6118.8 (3)C1—C2—H2A119.1
C2—C1—C6116.5 (2)C3—C2—H2A119.1
C2—C1—H1A121.7C4—C3—C2120.9 (3)
C6—C1—H1A121.7C4—C3—H3A119.5
C6—N2—C7107.06 (19)C2—C3—H3A119.5
C6—N2—C9126.07 (19)C11—C12—H12A109.5
C7—N2—C9126.7 (2)C11—C12—H12B109.5
O1—C10—O2124.6 (2)H12A—C12—H12B109.5
O1—C10—C9125.3 (2)C11—C12—H12C109.5
O2—C10—C9110.04 (19)H12A—C12—H12C109.5
N2—C9—C10112.00 (19)H12B—C12—H12C109.5
N2—C9—H9A109.2C7—C8—H8A109.5
C10—C9—H9A109.2C7—C8—H8B109.5
N2—C9—H9B109.2H8A—C8—H8B109.5
C10—C9—H9B109.2C7—C8—H8C109.5
H9A—C9—H9B107.9H8A—C8—H8C109.5
C7—N1—C5105.4 (2)H8B—C8—H8C109.5
C3—C4—C5119.0 (3)O2—C11—C12107.0 (3)
C3—C4—H4A120.5O2—C11—H11A110.3
C5—C4—H4A120.5C12—C11—H11A110.3
N2—C6—C1132.1 (2)O2—C11—H11B110.3
N2—C6—C5105.0 (2)C12—C11—H11B110.3
C1—C6—C5122.9 (2)H11A—C11—H11B108.6
N1—C7—N2112.2 (2)
C11—O2—C10—O1−1.1 (4)C2—C1—C6—C50.2 (3)
C11—O2—C10—C9180.0 (2)N1—C5—C6—N20.1 (3)
C6—N2—C9—C10−93.6 (3)C4—C5—C6—N2−179.8 (2)
C7—N2—C9—C1080.8 (3)N1—C5—C6—C1179.1 (2)
O1—C10—C9—N22.6 (4)C4—C5—C6—C1−0.8 (4)
O2—C10—C9—N2−178.4 (2)C5—N1—C7—N20.6 (3)
C4—C5—N1—C7179.5 (3)C5—N1—C7—C8−179.1 (2)
C6—C5—N1—C7−0.4 (3)C6—N2—C7—N1−0.6 (3)
N1—C5—C4—C3−179.0 (3)C9—N2—C7—N1−175.9 (2)
C6—C5—C4—C30.9 (4)C6—N2—C7—C8179.1 (2)
C7—N2—C6—C1−178.6 (3)C9—N2—C7—C83.9 (4)
C9—N2—C6—C1−3.3 (4)C6—C1—C2—C30.2 (4)
C7—N2—C6—C50.3 (2)C5—C4—C3—C2−0.5 (4)
C9—N2—C6—C5175.6 (2)C1—C2—C3—C4−0.1 (4)
C2—C1—C6—N2179.0 (3)C10—O2—C11—C12170.5 (2)
D—H···AD—HH···AD···AD—H···A
C9—H9B···N1i0.972.613.532 (3)159
C8—H8C···Cg1ii0.972.743.633 (5)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9B⋯N1i0.972.613.532 (3)159
C8—H8CCg1ii0.972.743.633 (5)155

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the imidazole ring.

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
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1.  tert-Butyl 2-(1H-benzimidazol-1-yl)acetate.

Authors:  Nassir N Al-Mohammed; Yatimah Alias; Zanariah Abdullah; Hamid Khaledi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

2.  Dimethyl 2,2'-[2,2'-bi(1H-1,3-benzimidazole)-1,1'-di-yl]diacetate.

Authors:  Huai-Ling Guo; Jia-Cheng Liu; Chao-Hu Xiao; Ting Pang; Ping Cao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-21
  2 in total

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