Literature DB >> 22904950

Dimethyl 2,2'-[2,2'-bi(1H-1,3-benzimidazole)-1,1'-di-yl]diacetate.

Huai-Ling Guo1, Jia-Cheng Liu, Chao-Hu Xiao, Ting Pang, Ping Cao.   

Abstract

The whole mol-ecule of the title compound, C(20)H(18)N(4)O(4), is generated by an inversion center. The benzimidazole ring mean plane make a dihedral angle of 89.4 (8)° with the plane passing through the acetate group (COO). In the crystal, mol-ecules are linked via weak C-H⋯O hydrogen bonds and π-π inter-actions [centroid-centroid distance = 3.743 (3) Å] involving inversion-related benzimidazole groups.

Entities:  

Year:  2012        PMID: 22904950      PMCID: PMC3414963          DOI: 10.1107/S1600536812032266

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Al-Mohammed et al. (2012 ▶); Fu & Xu (2009 ▶); Xu & Wang (2008 ▶). For the synthesis of 2,2′-bibenzimidazole, see: Tang et al. (2007 ▶).

Experimental

Crystal data

C20H18N4O4 M = 378.38 Triclinic, a = 6.904 (4) Å b = 8.494 (5) Å c = 8.643 (5) Å α = 67.191 (5)° β = 70.360 (5)° γ = 87.172 (5)° V = 438.1 (4) Å3 Z = 1 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.33 × 0.31 × 0.29 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.967, T max = 0.971 3034 measured reflections 1600 independent reflections 1172 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.127 S = 1.06 1600 reflections 128 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812032266/su2479sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032266/su2479Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812032266/su2479Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18N4O4Z = 1
Mr = 378.38F(000) = 198
Triclinic, P1Dx = 1.434 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.904 (4) ÅCell parameters from 853 reflections
b = 8.494 (5) Åθ = 2.6–23.8°
c = 8.643 (5) ŵ = 0.10 mm1
α = 67.191 (5)°T = 296 K
β = 70.360 (5)°Block, brown
γ = 87.172 (5)°0.33 × 0.31 × 0.29 mm
V = 438.1 (4) Å3
Bruker APEXII CCD diffractometer1600 independent reflections
Radiation source: fine-focus sealed tube1172 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.967, Tmax = 0.971k = −9→10
3034 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0656P)2 + 0.0023P] where P = (Fo2 + 2Fc2)/3
1600 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3492 (3)0.6658 (2)0.5117 (2)0.0382 (5)
C20.5275 (3)0.7663 (3)0.4646 (3)0.0485 (6)
H20.60330.83320.34600.058*
C30.5865 (4)0.7619 (3)0.6022 (3)0.0539 (6)
H30.70630.82710.57620.065*
C40.4722 (4)0.6624 (3)0.7808 (3)0.0533 (6)
H40.51730.66350.87040.064*
C50.2955 (3)0.5636 (3)0.8265 (3)0.0497 (6)
H50.21970.49790.94540.060*
C60.2327 (3)0.5645 (2)0.6892 (2)0.0397 (5)
C70.0742 (3)0.5291 (2)0.5281 (2)0.0385 (5)
C80.3089 (3)0.7314 (2)0.2179 (2)0.0433 (5)
H8A0.26740.65830.16960.052*
H8B0.45850.75040.16910.052*
C90.2220 (3)0.9010 (3)0.1547 (3)0.0435 (5)
C100.0081 (4)1.1015 (3)0.2334 (4)0.0720 (8)
H10A0.11621.19330.16120.108*
H10B−0.07521.11950.33820.108*
H10C−0.07641.09890.16590.108*
N10.2463 (2)0.64117 (18)0.41008 (19)0.0388 (4)
N20.0622 (3)0.4797 (2)0.6961 (2)0.0435 (5)
O10.2651 (3)0.9897 (2)−0.00051 (19)0.0731 (6)
O20.0980 (2)0.94015 (17)0.28611 (18)0.0535 (5)
U11U22U33U12U13U23
C10.0432 (12)0.0319 (10)0.0357 (10)0.0078 (9)−0.0109 (9)−0.0122 (8)
C20.0521 (14)0.0445 (12)0.0380 (11)−0.0018 (10)−0.0083 (10)−0.0104 (9)
C30.0519 (14)0.0543 (13)0.0493 (13)−0.0041 (11)−0.0148 (11)−0.0153 (11)
C40.0571 (15)0.0605 (14)0.0434 (12)0.0081 (12)−0.0224 (11)−0.0176 (11)
C50.0498 (14)0.0542 (13)0.0354 (11)0.0099 (11)−0.0134 (10)−0.0094 (9)
C60.0429 (13)0.0351 (10)0.0329 (10)0.0077 (9)−0.0102 (9)−0.0079 (8)
C70.0420 (12)0.0299 (10)0.0321 (10)0.0035 (9)−0.0063 (8)−0.0059 (8)
C80.0497 (13)0.0421 (11)0.0280 (10)−0.0052 (10)−0.0030 (9)−0.0110 (8)
C90.0431 (13)0.0446 (12)0.0335 (10)−0.0084 (9)−0.0131 (9)−0.0044 (9)
C100.082 (2)0.0443 (13)0.0862 (18)0.0167 (13)−0.0383 (16)−0.0158 (13)
N10.0442 (10)0.0304 (8)0.0302 (8)0.0015 (7)−0.0059 (7)−0.0058 (7)
N20.0454 (11)0.0396 (9)0.0321 (9)0.0036 (8)−0.0079 (8)−0.0049 (7)
O10.0739 (12)0.0779 (12)0.0375 (9)0.0000 (10)−0.0172 (8)0.0073 (8)
O20.0684 (11)0.0384 (8)0.0470 (9)0.0120 (7)−0.0185 (8)−0.0119 (7)
C1—N11.377 (3)C7—N11.379 (2)
C1—C21.381 (3)C7—C7i1.449 (4)
C1—C61.398 (3)C8—N11.448 (2)
C2—C31.368 (3)C8—C91.503 (3)
C2—H20.9300C8—H8A0.9700
C3—C41.398 (3)C8—H8B0.9700
C3—H30.9300C9—O11.194 (2)
C4—C51.367 (3)C9—O21.321 (2)
C4—H40.9300C10—O21.447 (3)
C5—C61.391 (3)C10—H10A0.9600
C5—H50.9300C10—H10B0.9600
C6—N21.383 (3)C10—H10C0.9600
C7—N21.320 (2)
N1—C1—C2131.59 (18)N1—C8—C9115.16 (16)
N1—C1—C6105.60 (18)N1—C8—H8A108.5
C2—C1—C6122.81 (19)C9—C8—H8A108.5
C3—C2—C1116.29 (19)N1—C8—H8B108.5
C3—C2—H2121.9C9—C8—H8B108.5
C1—C2—H2121.9H8A—C8—H8B107.5
C2—C3—C4122.0 (2)O1—C9—O2124.6 (2)
C2—C3—H3119.0O1—C9—C8121.8 (2)
C4—C3—H3119.0O2—C9—C8113.58 (15)
C5—C4—C3121.4 (2)O2—C10—H10A109.5
C5—C4—H4119.3O2—C10—H10B109.5
C3—C4—H4119.3H10A—C10—H10B109.5
C4—C5—C6117.83 (19)O2—C10—H10C109.5
C4—C5—H5121.1H10A—C10—H10C109.5
C6—C5—H5121.1H10B—C10—H10C109.5
N2—C6—C5130.18 (18)C1—N1—C7106.58 (15)
N2—C6—C1110.13 (17)C1—N1—C8123.60 (16)
C5—C6—C1119.7 (2)C7—N1—C8129.65 (17)
N2—C7—N1112.52 (18)C7—N2—C6105.16 (16)
N2—C7—C7i124.2 (2)C9—O2—C10116.11 (17)
N1—C7—C7i123.3 (2)
N1—C1—C2—C3179.33 (19)C2—C1—N1—C8−3.2 (3)
C6—C1—C2—C30.1 (3)C6—C1—N1—C8176.12 (16)
C1—C2—C3—C4−0.5 (3)N2—C7—N1—C1−0.7 (2)
C2—C3—C4—C50.3 (3)C7i—C7—N1—C1−179.9 (2)
C3—C4—C5—C60.2 (3)N2—C7—N1—C8−176.09 (18)
C4—C5—C6—N2−179.3 (2)C7i—C7—N1—C84.8 (3)
C4—C5—C6—C1−0.5 (3)C9—C8—N1—C1−87.6 (2)
N1—C1—C6—N20.0 (2)C9—C8—N1—C787.1 (2)
C2—C1—C6—N2179.38 (19)N1—C7—N2—C60.7 (2)
N1—C1—C6—C5−179.02 (17)C7i—C7—N2—C6179.9 (2)
C2—C1—C6—C50.4 (3)C5—C6—N2—C7178.5 (2)
N1—C8—C9—O1178.39 (19)C1—C6—N2—C7−0.4 (2)
N1—C8—C9—O2−1.1 (3)O1—C9—O2—C101.1 (3)
C2—C1—N1—C7−178.9 (2)C8—C9—O2—C10−179.49 (17)
C6—C1—N1—C70.42 (19)
D—H···AD—HH···AD···AD—H···A
C8—H8B···O1ii0.972.593.364 (3)137
C10—H10C···O1iii0.962.553.481 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8B⋯O1i 0.972.593.364 (3)137
C10—H10C⋯O1ii 0.962.553.481 (4)164

Symmetry codes: (i) ; (ii) .

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