Literature DB >> 21582824

Ethyl (E)-1-(2-styryl-1H-benzimidazol-1-yl)acetate.

Xue-Qun Fu1, Guang-Hai Xu.   

Abstract

In the title compound, C(19)H(18)NO(2), the dihedral angle between the benzimidazole and phenyl ring planes is 18.18 (17)°. The atoms of the ethyl side chain are disordered over two sets of sites in a 0.50:0.50 ratio. In the crystal, inter-molecular C-H⋯O hydrogen bonds and C-H⋯π contacts help to consolidate the packing.

Entities:  

Year:  2009        PMID: 21582824      PMCID: PMC2969365          DOI: 10.1107/S1600536809019825

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further synthetic details, see: Hang & Ye (2008 ▶). For background on benzimidazoles, see: Göker et al. (1999 ▶); Özbey et al. (1998 ▶).

Experimental

Crystal data

C19H18N2O2 M = 307.36 Orthorhombic, a = 12.021 (2) Å b = 14.369 (3) Å c = 9.7517 (18) Å V = 1684.4 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 (2) K 0.25 × 0.25 × 0.20 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) T min = 0.884, T max = 0.984 16640 measured reflections 2046 independent reflections 1545 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.151 S = 1.07 2046 reflections 215 parameters 43 restraints H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809019825/hb2982sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019825/hb2982Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18N2O2F(000) = 652
Mr = 307.36Dx = 1.212 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 3237 reflections
a = 12.021 (2) Åθ = 2.5–27.5°
b = 14.369 (3) ŵ = 0.08 mm1
c = 9.7517 (18) ÅT = 298 K
V = 1684.4 (5) Å3Prism, colourless
Z = 40.25 × 0.25 × 0.20 mm
Rigaku SCXmini diffractometer2046 independent reflections
Radiation source: fine-focus sealed tube1545 reflections with I > 2σ(I)
graphiteRint = 0.056
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.8°
CCD_Profile_fitting scansh = −15→15
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −18→18
Tmin = 0.884, Tmax = 0.984l = −12→12
16640 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0802P)2 + 0.1398P] where P = (Fo2 + 2Fc2)/3
2046 reflections
215 parametersΔρmax = 0.16 e Å3
43 restraintsΔρmin = −0.25 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.1633 (2)0.13879 (18)0.1323 (3)0.0509 (6)
N20.0004 (2)0.14329 (18)0.0204 (3)0.0558 (7)
C50.1630 (2)0.0626 (2)0.0454 (3)0.0500 (7)
O10.3290 (2)0.2529 (2)0.0215 (3)0.0743 (7)
O20.4352 (2)0.2271 (2)0.2042 (3)0.0925 (10)
C30.3424 (3)0.2197 (2)0.1332 (4)0.0570 (8)
C60.0611 (3)0.0668 (2)−0.0229 (4)0.0543 (8)
C110.0644 (2)0.1847 (2)0.1111 (3)0.0493 (7)
C120.0354 (3)0.2693 (2)0.1853 (4)0.0559 (8)
H12A0.07990.28730.25860.067*
C13−0.0510 (3)0.3216 (2)0.1534 (4)0.0587 (8)
H13A−0.09240.30240.07800.070*
C14−0.0894 (3)0.4059 (2)0.2221 (4)0.0586 (8)
C40.2583 (3)0.1664 (2)0.2144 (3)0.0539 (7)
H4A0.29320.11130.25240.065*
H4B0.23290.20460.29030.065*
C70.0364 (3)−0.0019 (3)−0.1204 (4)0.0675 (10)
H7A−0.0309−0.0015−0.16750.081*
C15−0.1778 (4)0.4562 (3)0.1668 (5)0.0794 (12)
H15A−0.21050.43600.08560.095*
C19−0.0430 (3)0.4385 (3)0.3420 (4)0.0715 (10)
H19A0.01710.40720.38060.086*
C90.2151 (4)−0.0720 (3)−0.0755 (4)0.0763 (11)
H9A0.2658−0.1190−0.09530.092*
C18−0.0843 (4)0.5169 (3)0.4058 (5)0.0863 (13)
H18A−0.05190.53780.48670.104*
C80.1142 (4)−0.0697 (3)−0.1441 (5)0.0804 (12)
H8A0.0987−0.1157−0.20850.096*
C100.2420 (3)−0.0058 (2)0.0215 (4)0.0652 (9)
H10A0.3094−0.00700.06840.078*
C16−0.2178 (4)0.5352 (3)0.2300 (6)0.0944 (14)
H16A−0.27570.56860.19020.113*
C17−0.1726 (5)0.5644 (3)0.3512 (6)0.0941 (15)
H17A−0.20150.61610.39620.113*
C10.5262 (14)0.283 (2)0.143 (3)0.128 (3)0.50
H1A0.52130.28200.04370.153*0.50
H1B0.52180.34700.17380.153*0.50
C20.628 (3)0.241 (2)0.188 (3)0.137 (8)0.50
H2B0.68990.27320.14680.206*0.50
H2C0.62960.17690.16060.206*0.50
H2D0.63360.24530.28580.206*0.50
C1'0.5333 (14)0.271 (2)0.137 (3)0.128 (3)0.50
H1'A0.55640.23380.05900.153*0.50
H1'B0.51470.33270.10580.153*0.50
C2'0.621 (3)0.275 (2)0.237 (3)0.137 (8)0.50
H2'A0.68390.30700.19820.206*0.50
H2'B0.64290.21300.26220.206*0.50
H2'C0.59580.30780.31670.206*0.50
U11U22U33U12U13U23
N10.0473 (13)0.0574 (15)0.0480 (13)−0.0008 (12)−0.0054 (12)−0.0040 (13)
N20.0486 (13)0.0628 (16)0.0560 (15)−0.0030 (13)−0.0017 (13)−0.0031 (15)
C50.0513 (17)0.0551 (17)0.0434 (17)−0.0044 (15)0.0014 (14)−0.0030 (14)
O10.0745 (16)0.0925 (18)0.0560 (14)−0.0139 (14)−0.0052 (14)0.0121 (15)
O20.0618 (15)0.125 (2)0.090 (2)−0.0270 (16)−0.0254 (16)0.043 (2)
C30.0547 (18)0.0639 (19)0.0525 (19)−0.0027 (16)−0.0054 (15)−0.0003 (17)
C60.0513 (18)0.0607 (18)0.0510 (17)−0.0093 (15)0.0032 (14)−0.0006 (16)
C110.0451 (16)0.0533 (16)0.0495 (17)−0.0047 (14)0.0063 (14)0.0020 (15)
C120.0571 (19)0.0557 (18)0.0550 (19)−0.0045 (16)0.0044 (15)0.0012 (16)
C130.0571 (19)0.0631 (19)0.0560 (19)0.0008 (16)−0.0026 (15)−0.0011 (17)
C140.0614 (19)0.0538 (17)0.0604 (19)0.0014 (16)0.0056 (18)0.0043 (17)
C40.0559 (18)0.0615 (16)0.0442 (15)−0.0003 (17)−0.0074 (15)0.0007 (16)
C70.060 (2)0.074 (2)0.068 (2)−0.0138 (19)−0.0028 (18)−0.015 (2)
C150.082 (3)0.071 (2)0.085 (3)0.016 (2)−0.010 (2)−0.005 (2)
C190.075 (2)0.073 (2)0.067 (2)0.0104 (19)0.0006 (19)−0.005 (2)
C90.082 (3)0.068 (2)0.079 (2)0.010 (2)0.002 (2)−0.017 (2)
C180.105 (3)0.080 (3)0.074 (3)0.006 (3)−0.003 (3)−0.016 (2)
C80.089 (3)0.072 (2)0.080 (3)−0.010 (2)0.000 (2)−0.027 (2)
C100.0597 (18)0.0716 (19)0.064 (2)0.0050 (18)−0.0025 (18)−0.0081 (19)
C160.100 (4)0.082 (3)0.101 (3)0.034 (3)−0.008 (3)−0.003 (3)
C170.112 (4)0.074 (3)0.096 (3)0.025 (3)0.022 (3)−0.004 (3)
C10.078 (3)0.160 (7)0.145 (6)−0.048 (4)−0.024 (4)0.068 (6)
C20.086 (5)0.18 (2)0.151 (19)−0.025 (9)−0.005 (10)0.031 (12)
C1'0.078 (3)0.160 (7)0.145 (6)−0.048 (4)−0.024 (4)0.068 (6)
C2'0.086 (5)0.18 (2)0.151 (19)−0.025 (9)−0.005 (10)0.031 (12)
N1—C111.376 (4)C15—H15A0.9300
N1—C51.384 (4)C19—C181.380 (6)
N1—C41.450 (4)C19—H19A0.9300
N2—C111.314 (4)C9—C101.380 (5)
N2—C61.385 (4)C9—C81.387 (6)
C5—C101.387 (5)C9—H9A0.9300
C5—C61.395 (4)C18—C171.369 (7)
O1—C31.200 (5)C18—H18A0.9300
O2—C31.318 (4)C8—H8A0.9300
O2—C11.482 (9)C10—H10A0.9300
O2—C1'1.485 (9)C16—C171.367 (8)
C3—C41.495 (5)C16—H16A0.9300
C6—C71.402 (5)C17—H17A0.9300
C11—C121.457 (5)C1—C21.434 (10)
C12—C131.318 (5)C1—H1A0.9700
C12—H12A0.9300C1—H1B0.9700
C13—C141.459 (5)C2—H2B0.9600
C13—H13A0.9300C2—H2C0.9600
C14—C191.378 (5)C2—H2D0.9600
C14—C151.393 (5)C1'—C2'1.436 (10)
C4—H4A0.9700C1'—H1'A0.9700
C4—H4B0.9700C1'—H1'B0.9700
C7—C81.370 (6)C2'—H2'A0.9600
C7—H7A0.9300C2'—H2'B0.9600
C15—C161.378 (6)C2'—H2'C0.9600
C11—N1—C5106.6 (2)C10—C9—C8121.3 (4)
C11—N1—C4129.2 (3)C10—C9—H9A119.3
C5—N1—C4123.8 (3)C8—C9—H9A119.3
C11—N2—C6104.9 (3)C17—C18—C19120.7 (5)
N1—C5—C10131.4 (3)C17—C18—H18A119.6
N1—C5—C6105.1 (3)C19—C18—H18A119.6
C10—C5—C6123.5 (3)C7—C8—C9122.2 (4)
C3—O2—C1117.2 (11)C7—C8—H8A118.9
C3—O2—C1'118.4 (10)C9—C8—H8A118.9
C1—O2—C1'8(3)C9—C10—C5116.3 (4)
O1—C3—O2124.0 (3)C9—C10—H10A121.8
O1—C3—C4126.4 (3)C5—C10—H10A121.8
O2—C3—C4109.6 (3)C17—C16—C15120.0 (5)
N2—C6—C5110.6 (3)C17—C16—H16A120.0
N2—C6—C7130.8 (3)C15—C16—H16A120.0
C5—C6—C7118.7 (3)C16—C17—C18119.4 (4)
N2—C11—N1112.9 (3)C16—C17—H17A120.3
N2—C11—C12124.9 (3)C18—C17—H17A120.3
N1—C11—C12122.2 (3)C2—C1—O2106 (2)
C13—C12—C11123.1 (3)C2—C1—H1A110.5
C13—C12—H12A118.4O2—C1—H1A110.5
C11—C12—H12A118.4C2—C1—H1B110.5
C12—C13—C14127.9 (3)O2—C1—H1B110.5
C12—C13—H13A116.1H1A—C1—H1B108.6
C14—C13—H13A116.1C1—C2—H2B109.5
C19—C14—C15117.4 (4)C1—C2—H2C109.5
C19—C14—C13122.9 (3)H2B—C2—H2C109.5
C15—C14—C13119.6 (3)C1—C2—H2D109.5
N1—C4—C3112.3 (3)H2B—C2—H2D109.5
N1—C4—H4A109.1H2C—C2—H2D109.5
C3—C4—H4A109.1C2'—C1'—O2108 (2)
N1—C4—H4B109.1C2'—C1'—H1'A110.1
C3—C4—H4B109.1O2—C1'—H1'A110.1
H4A—C4—H4B107.9C2'—C1'—H1'B110.1
C8—C7—C6118.0 (4)O2—C1'—H1'B110.1
C8—C7—H7A121.0H1'A—C1'—H1'B108.4
C6—C7—H7A121.0C1'—C2'—H2'A109.5
C16—C15—C14121.4 (5)C1'—C2'—H2'B109.5
C16—C15—H15A119.3H2'A—C2'—H2'B109.5
C14—C15—H15A119.3C1'—C2'—H2'C109.5
C14—C19—C18121.0 (4)H2'A—C2'—H2'C109.5
C14—C19—H19A119.5H2'B—C2'—H2'C109.5
C18—C19—H19A119.5
C11—N1—C5—C10178.2 (4)C12—C13—C14—C15174.9 (4)
C4—N1—C5—C104.8 (5)C11—N1—C4—C3−91.5 (4)
C11—N1—C5—C6−0.8 (3)C5—N1—C4—C380.3 (4)
C4—N1—C5—C6−174.2 (3)O1—C3—C4—N113.5 (5)
C1—O2—C3—O12.3 (17)O2—C3—C4—N1−167.8 (3)
C1'—O2—C3—O1−6.5 (17)N2—C6—C7—C8178.9 (4)
C1—O2—C3—C4−176.4 (16)C5—C6—C7—C8−0.3 (5)
C1'—O2—C3—C4174.8 (16)C19—C14—C15—C16−0.4 (6)
C11—N2—C6—C50.7 (4)C13—C14—C15—C16178.8 (4)
C11—N2—C6—C7−178.6 (4)C15—C14—C19—C181.2 (6)
N1—C5—C6—N20.1 (3)C13—C14—C19—C18−177.9 (4)
C10—C5—C6—N2−179.0 (3)C14—C19—C18—C170.0 (7)
N1—C5—C6—C7179.5 (3)C6—C7—C8—C9−0.1 (7)
C10—C5—C6—C70.4 (5)C10—C9—C8—C70.4 (7)
C6—N2—C11—N1−1.2 (4)C8—C9—C10—C5−0.3 (6)
C6—N2—C11—C12180.0 (3)N1—C5—C10—C9−178.9 (3)
C5—N1—C11—N21.3 (4)C6—C5—C10—C9−0.1 (5)
C4—N1—C11—N2174.2 (3)C14—C15—C16—C17−1.7 (8)
C5—N1—C11—C12−179.8 (3)C15—C16—C17—C182.9 (8)
C4—N1—C11—C12−7.0 (5)C19—C18—C17—C16−2.0 (8)
N2—C11—C12—C13−11.1 (5)C3—O2—C1—C2−147.8 (16)
N1—C11—C12—C13170.2 (3)C1'—O2—C1—C2−47 (14)
C11—C12—C13—C14178.3 (3)C3—O2—C1'—C2'177.1 (14)
C12—C13—C14—C19−5.9 (6)C1—O2—C1'—C2'94 (16)
D—H···AD—HH···AD···AD—H···A
C4—H4B···O1i0.972.473.409 (4)162
C4—H4A···Cg2ii0.972.673.577 (4)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4B⋯O1i0.972.473.409 (4)162
C4—H4ACg2ii0.972.673.577 (4)156

Symmetry codes: (i) ; (ii) ; (iii) .

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