Literature DB >> 22374412

Gene-Z: a device for point of care genetic testing using a smartphone.

Robert D Stedtfeld1, Dieter M Tourlousse, Gregoire Seyrig, Tiffany M Stedtfeld, Maggie Kronlein, Scott Price, Farhan Ahmad, Erdogan Gulari, James M Tiedje, Syed A Hashsham.   

Abstract

By 2012, point of care (POC) testing will constitute roughly one third of the $59 billion in vitro diagnostics market. The ability to carry out multiplexed genetic testing and wireless connectivity are emerging as key attributes of future POC devices. In this study, an inexpensive, user-friendly and compact device (termed Gene-Z) is presented for rapid quantitative detection of multiple genetic markers with high sensitivity and specificity. Using a disposable valve-less polymer microfluidic chip containing four arrays of 15 reaction wells each with dehydrated primers for isothermal amplification, the Gene-Z enables simultaneous analysis of four samples, each for multiple genetic markers in parallel, requiring only a single pipetting step per sample for dispensing. To drastically reduce the cost and size of the real-time detector necessary for quantification, loop-mediated isothermal amplification (LAMP) was performed with a high concentration of SYTO-81, a non-inhibiting fluorescent DNA binding dye. The Gene-Z is operated using an iPod Touch, which also receives data and carries out automated analysis and reporting via a WiFi interface. This study presents data pertaining to performance of the device including sensitivity and reproducibility using genomic DNA from Escherichia coli and Staphylococcus aureus. Overall, the Gene-Z represents a significant step toward truly inexpensive and compact tools for POC genetic testing.

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Year:  2012        PMID: 22374412     DOI: 10.1039/c2lc21226a

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  52 in total

1.  Loop-Mediated Isothermal Amplification (LAMP) for Rapid Detection and Quantification of Dehalococcoides Biomarker Genes in Commercial Reductive Dechlorinating Cultures KB-1 and SDC-9.

Authors:  Yogendra H Kanitkar; Robert D Stedtfeld; Robert J Steffan; Syed A Hashsham; Alison M Cupples
Journal:  Appl Environ Microbiol       Date:  2016-01-08       Impact factor: 4.792

2.  Antimicrobial resistance dashboard application for mapping environmental occurrence and resistant pathogens.

Authors:  Robert D Stedtfeld; Maggie R Williams; Umama Fakher; Timothy A Johnson; Tiffany M Stedtfeld; Fang Wang; Walid T Khalife; Mary Hughes; Brett E Etchebarne; James M Tiedje; Syed A Hashsham
Journal:  FEMS Microbiol Ecol       Date:  2016-02-04       Impact factor: 4.194

Review 3.  The emerging field of mobile health.

Authors:  Steven R Steinhubl; Evan D Muse; Eric J Topol
Journal:  Sci Transl Med       Date:  2015-04-15       Impact factor: 17.956

4.  Simultaneous DNA amplification and detection using a pH-sensing semiconductor system.

Authors:  Christofer Toumazou; Leila M Shepherd; Samuel C Reed; Ginny I Chen; Alpesh Patel; David M Garner; Chan-Ju A Wang; Chung-Pei Ou; Krishna Amin-Desai; Panteleimon Athanasiou; Hua Bai; Ines M Q Brizido; Benjamin Caldwell; Daniel Coomber-Alford; Pantelis Georgiou; Karen S Jordan; John C Joyce; Maurizio La Mura; Daniel Morley; Sreekala Sathyavruthan; Sara Temelso; Risha E Thomas; Linglan Zhang
Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

5.  Implications of direct amplification for measuring antimicrobial resistance using point-of-care devices.

Authors:  M R Williams; R D Stedtfeld; H Waseem; T Stedtfeld; B Upham; W Khalife; B Etchebarne; M Hughes; J M Tiedje; S A Hashsham
Journal:  Anal Methods       Date:  2017-01-31       Impact factor: 2.896

6.  Smartphone operable centrifugal system (SOCS) for on-site DNA extraction from foodborne bacterial pathogen.

Authors:  Soon Woo Jeong; Yoo Min Park; Sung Hee Jo; Seok Jae Lee; Yong Tae Kim; Kyoung G Lee
Journal:  Biomicrofluidics       Date:  2019-05-22       Impact factor: 2.800

7.  On-filter direct amplification of Legionella pneumophila for rapid assessment of its abundance and viability.

Authors:  Farag A Samhan; Tiffany M Stedtfeld; Hassan Waseem; Maggie R Williams; Robert D Stedtfeld; Syed A Hashsham
Journal:  Water Res       Date:  2017-05-13       Impact factor: 11.236

8.  The making of a medical microchip.

Authors:  Amber Dance
Journal:  Nature       Date:  2017-05-24       Impact factor: 49.962

9.  Emerging Loop-Mediated Isothermal Amplification-Based Microchip and Microdevice Technologies for Nucleic Acid Detection.

Authors:  Mohammadali Safavieh; Manoj K Kanakasabapathy; Farhang Tarlan; Minhaz U Ahmed; Mohammed Zourob; Waseem Asghar; Hadi Shafiee
Journal:  ACS Biomater Sci Eng       Date:  2016-01-21

10.  Analysis of circulating non-coding RNAs in a non-invasive and cost-effective manner.

Authors:  Yu-Min Wang; Michael Patrick Trinh; Yongzan Zheng; Kaizhu Guo; Luis A Jimenez; Wenwan Zhong
Journal:  Trends Analyt Chem       Date:  2019-07-05       Impact factor: 12.296

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