Literature DB >> 31149321

Smartphone operable centrifugal system (SOCS) for on-site DNA extraction from foodborne bacterial pathogen.

Soon Woo Jeong1, Yoo Min Park1, Sung Hee Jo1, Seok Jae Lee1, Yong Tae Kim2, Kyoung G Lee1.   

Abstract

The on-site recovery of nucleic acid from foodborne bacteria is in high demand to further understand on-site molecular diagnosis, which is especially applicable in developing countries. Here, we first proposed a smartphone operable centrifugal system (SOCS) for nucleic acid extraction with the assistance of a low power consumable motor and hydrogel beads. The SOCS consists of a centrifugal motor, 3D-printed cartridge, a nucleic acid collection column, and a smartphone. The SOCS shows excellent DNA extraction performance within 6 min, and it can operate more than 100 times using a smartphone. The purified effluent DNA was accumulated in the nucleic acid collection column. The performance of the SOCS was confirmed by amplifying the recovered DNA from Escherichia coli O157:H7. Moreover, the artificially inoculated food and blood samples also confirmed the performance of SOCS. The proposed SOCS provides an on-site operable nucleic acid separation platform in terms of simplicity, easy usability, cost-effectiveness, and portability in pathogenic point-of-care diagnostics.

Entities:  

Year:  2019        PMID: 31149321      PMCID: PMC6531255          DOI: 10.1063/1.5093752

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  28 in total

1.  Microfluidic chip for high efficiency DNA extraction.

Authors:  Yung-Chiang Chung; Ming-Shiung Jan; Yu-Cheng Lin; Ju-Hwa Lin; Wang-Chin Cheng; Chia-Yu Fan
Journal:  Lab Chip       Date:  2004-02-04       Impact factor: 6.799

2.  Gene-Z: a device for point of care genetic testing using a smartphone.

Authors:  Robert D Stedtfeld; Dieter M Tourlousse; Gregoire Seyrig; Tiffany M Stedtfeld; Maggie Kronlein; Scott Price; Farhan Ahmad; Erdogan Gulari; James M Tiedje; Syed A Hashsham
Journal:  Lab Chip       Date:  2012-02-29       Impact factor: 6.799

3.  Manipulation and extraction of genomic DNA from cell lysate by functionalized magnetic particles for lab on a chip applications.

Authors:  Siu Wai Yeung; I-Ming Hsing
Journal:  Biosens Bioelectron       Date:  2006-01-15       Impact factor: 10.618

4.  Comparison of methods for total community DNA extraction and purification from compost.

Authors:  Zh H Yang; Y Xiao; G M Zeng; Zh Y Xu; Y Sh Liu
Journal:  Appl Microbiol Biotechnol       Date:  2006-11-18       Impact factor: 4.813

5.  Cell lysis and DNA extraction of gram-positive and gram-negative bacteria from whole blood in a disposable microfluidic chip.

Authors:  Madhumita Mahalanabis; Hussam Al-Muayad; M Dominika Kulinski; Dave Altman; Catherine M Klapperich
Journal:  Lab Chip       Date:  2009-06-29       Impact factor: 6.799

6.  Semi-automated fluorogenic PCR assays (TaqMan) forrapid detection of Escherichia coli O157:H7 and other shiga toxigenic E. coli.

Authors:  V K Sharma; E A Dean-Nystrom; T A Casey
Journal:  Mol Cell Probes       Date:  1999-08       Impact factor: 2.365

7.  Fabrication of amino silane-coated microchip for DNA extraction from whole blood.

Authors:  Takahito Nakagawa; Tsuyoshi Tanaka; Daisuke Niwa; Tetsuya Osaka; Haruko Takeyama; Tadashi Matsunaga
Journal:  J Biotechnol       Date:  2004-11-30       Impact factor: 3.307

8.  One-step pathogen specific DNA extraction from whole blood on a centrifugal microfluidic device.

Authors:  Yoon-Kyoung Cho; Jeong-Gun Lee; Jong-Myeon Park; Beom-Seok Lee; Youngsun Lee; Christopher Ko
Journal:  Lab Chip       Date:  2007-02-15       Impact factor: 6.799

9.  FlindersTechnology Associates (FTA) filter paper-based DNA extraction with polymerase chain reaction (PCR) for detection of Pneumocystis jirovecii from respiratory specimens of immunocompromised patients.

Authors:  Surang Nuchprayoon; Wilai Saksirisampant; Siraya Jaijakul; Issarang Nuchprayoon
Journal:  J Clin Lab Anal       Date:  2007       Impact factor: 2.352

Review 10.  Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review.

Authors:  Pascal Craw; Wamadeva Balachandran
Journal:  Lab Chip       Date:  2012-05-16       Impact factor: 6.799

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