Literature DB >> 22369314

OccK channels from Pseudomonas aeruginosa exhibit diverse single-channel electrical signatures but conserved anion selectivity.

Jiaming Liu1, Elif Eren, Jagamya Vijayaraghavan, Belete R Cheneke, Mridhu Indic, Bert van den Berg, Liviu Movileanu.   

Abstract

Pseudomonas aeruginosa is a Gram-negative bacterium that utilizes substrate-specific outer membrane (OM) proteins for the uptake of small, water-soluble nutrients employed in the growth and function of the cell. In this paper, we present for the first time a comprehensive single-channel examination of seven members of the OM carboxylate channel K (OccK) subfamily. Recent biochemical, functional, and structural characterization of the OccK proteins revealed their common features, such as a closely related, monomeric, 18-stranded β-barrel conformation with a kidney-shaped transmembrane pore and the presence of a basic ladder within the channel lumen. Here, we report that the OccK proteins exhibited fairly distinct unitary conductance values, in a much broader range than previously expected, which includes low (~40-100 pS) and medium (~100-380 pS) conductance. These proteins showed diverse single-channel dynamics of current gating transitions, revealing one-open substate (OccK3), two-open substate (OccK4-OccK6), and three-open substate (OccK1, OccK2, and OccK7) kinetics with functionally distinct conformations. Interestingly, we discovered that anion selectivity is a conserved trait among the members of the OccK subfamily, confirming the presence of a net pool of positively charged residues within their central constriction. Moreover, these results are in accord with an increased specificity and selectivity of these protein channels for negatively charged, carboxylate-containing substrates. Our findings might ignite future functional examinations and full atomistic computational studies for unraveling a mechanistic understanding of the passage of small molecules across the lumen of substrate-specific, β-barrel OM proteins.

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Year:  2012        PMID: 22369314      PMCID: PMC3311111          DOI: 10.1021/bi300066w

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  54 in total

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2.  X-ray structure of a protein-conducting channel.

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Review 3.  Molecular basis of bacterial outer membrane permeability revisited.

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4.  Folding at the speed limit.

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6.  Partitioning of a polymer into a nanoscopic protein pore obeys a simple scaling law.

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7.  Analysis of gating transitions among the three major open states of the OpdK channel.

Authors:  Belete R Cheneke; Bert van den Berg; Liviu Movileanu
Journal:  Biochemistry       Date:  2011-05-12       Impact factor: 3.162

Review 8.  Function of pseudomonas porins in uptake and efflux.

Authors:  Robert E W Hancock; Fiona S L Brinkman
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

9.  Partitioning of individual flexible polymers into a nanoscopic protein pore.

Authors:  Liviu Movileanu; Stephen Cheley; Hagan Bayley
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

10.  Substrate specificity within a family of outer membrane carboxylate channels.

Authors:  Elif Eren; Jagamya Vijayaraghavan; Jiaming Liu; Belete R Cheneke; Debra S Touw; Bryan W Lepore; Mridhu Indic; Liviu Movileanu; Bert van den Berg
Journal:  PLoS Biol       Date:  2012-01-17       Impact factor: 8.029

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  16 in total

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2.  Toward understanding the outer membrane uptake of small molecules by Pseudomonas aeruginosa.

Authors:  Elif Eren; Jamie Parkin; Ayodele Adelanwa; Belete Cheneke; Liviu Movileanu; Syma Khalid; Bert van den Berg
Journal:  J Biol Chem       Date:  2013-03-06       Impact factor: 5.157

3.  Cation selectivity is a conserved feature in the OccD subfamily of Pseudomonas aeruginosa.

Authors:  Jiaming Liu; Aaron J Wolfe; Elif Eren; Jagamya Vijayaraghavan; Mridhu Indic; Bert van den Berg; Liviu Movileanu
Journal:  Biochim Biophys Acta       Date:  2012-07-21

4.  An outer membrane protein undergoes enthalpy- and entropy-driven transitions.

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Journal:  Biochemistry       Date:  2012-06-20       Impact factor: 3.162

5.  Does the lipid environment impact the open-state conductance of an engineered β-barrel protein nanopore?

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Authors:  Aaron J Wolfe; Mohammad M Mohammad; Avinash K Thakur; Liviu Movileanu
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7.  The Transmembrane Domain of a Bicomponent ABC Transporter Exhibits Channel-Forming Activity.

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Journal:  ACS Chem Biol       Date:  2016-07-19       Impact factor: 5.100

Review 8.  Watching single proteins using engineered nanopores.

Authors:  Liviu Movileanu
Journal:  Protein Pept Lett       Date:  2014-03       Impact factor: 1.890

9.  Current noise of a protein-selective biological nanopore.

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Journal:  Proteomics       Date:  2021-07-31       Impact factor: 3.984

10.  The OpdQ porin of Pseudomonas aeruginosa is regulated by environmental signals associated with cystic fibrosis including nitrate-induced regulation involving the NarXL two-component system.

Authors:  Randal C Fowler; Nancy D Hanson
Journal:  Microbiologyopen       Date:  2015-10-12       Impact factor: 3.139

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