Literature DB >> 2235493

Evidence for the frequent use of TTG as the translation initiation codon of mitochondrial protein genes in the nematodes, Ascaris suum and Caenorhabditis elegans.

R Okimoto1, J L Macfarlane, D R Wolstenholme.   

Abstract

Data obtained from alignments of nucleotide sequences of mitochondrial (mt) DNA molecules of the nematode worms Ascaris suum and Caenorhabditis elegans indicate that in six of the mt-protein genes of A. suum and three of the mt-protein genes of C. elegans TTG is used as the translation initiation codon. Also, GTT seems to be the translation initiation codon of the A. suum COIII gene. All of the five remaining A. suum mt-protein genes appear to begin with ATT and the remaining nine C. elegans mt-protein genes appear to begin with either ATT or ATA. Therefore, in contrast to all other metazoan mtDNAs sequenced so far, it is likely that none of the nematode mt-protein genes use the standard ATG translation initiation codon. Some A. suum and C. elegans mt-protein genes end in T or TA, suggesting that, as found in other metazoan mitochondria, 3'-terminal polyadenylation is occasionally necessary to generate complete translation termination codons in transcripts of nematode mt-protein genes.

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Year:  1990        PMID: 2235493      PMCID: PMC332414          DOI: 10.1093/nar/18.20.6113

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  37 in total

1.  A different genetic code in human mitochondria.

Authors:  B G Barrell; A T Bankier; J Drouin
Journal:  Nature       Date:  1979-11-08       Impact factor: 49.962

2.  The initiation of translation in E. coli: apparent base pairing between the 16srRNA and downstream sequences of the mRNA.

Authors:  M L Sprengart; H P Fatscher; E Fuchs
Journal:  Nucleic Acids Res       Date:  1990-04-11       Impact factor: 16.971

3.  The DNA of Caenorhabditis elegans.

Authors:  J E Sulston; S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

4.  Mitochondrial plasmid DNAs of broad bean: nucleotide sequences, complex secondary structures, and transcription.

Authors:  J A Wahleithner; D R Wolstenholme
Journal:  Curr Genet       Date:  1987       Impact factor: 3.886

5.  Different pattern of codon recognition by mammalian mitochondrial tRNAs.

Authors:  B G Barrell; S Anderson; A T Bankier; M H de Bruijn; E Chen; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

6.  Nucleotide sequence and gene organization of sea urchin mitochondrial DNA.

Authors:  H T Jacobs; D J Elliott; V B Math; A Farquharson
Journal:  J Mol Biol       Date:  1988-07-20       Impact factor: 5.469

7.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

8.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

9.  Ribosomal initiation from an ACG codon in the Sendai virus P/C mRNA.

Authors:  J Curran; D Kolakofsky
Journal:  EMBO J       Date:  1988-01       Impact factor: 11.598

10.  A partial map of the circular mitochondrial genome of Drosophila melanogaster. Location of EcoRI-sensitive sites and the adenine-thymine-rich region.

Authors:  D R Wolstenholme; C M Fauron
Journal:  J Cell Biol       Date:  1976-11       Impact factor: 10.539

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  29 in total

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Authors:  A Volz-Lingenhöhl; M Solignac; D Sperlich
Journal:  Proc Natl Acad Sci U S A       Date:  1992-12-01       Impact factor: 11.205

2.  Complete mitochondrial genomes of two cockroaches, Blattella germanica and Periplaneta americana, and the phylogenetic position of termites.

Authors:  Bo Xiao; Ai-Hui Chen; Yan-Yan Zhang; Guo-Fang Jiang; Chao-Chao Hu; Chao-Dong Zhu
Journal:  Curr Genet       Date:  2012-02-07       Impact factor: 3.886

3.  Antarctic fish mitochondrial genomes lack ND6 gene.

Authors:  Chiara Papetti; Pietro Liò; Lukas Rüber; Tomaso Patarnello; Rafael Zardoya
Journal:  J Mol Evol       Date:  2007-10-23       Impact factor: 2.395

4.  New nucleotide sequence data on the EMBL File Server.

Authors: 
Journal:  Nucleic Acids Res       Date:  1991-12-25       Impact factor: 16.971

5.  Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAS and has a gene arrangement relatable to those of coelomate metazoans.

Authors:  D V Lavrov; W M Brown
Journal:  Genetics       Date:  2001-02       Impact factor: 4.562

6.  Mitochondrial DNA of the sea anemone, Metridium senile (Cnidaria): prokaryote-like genes for tRNA(f-Met) and small-subunit ribosomal RNA, and standard genetic code specificities for AGR and ATA codons.

Authors:  G A Pont-Kingdon; C T Beagley; R Okimoto; D R Wolstenholme
Journal:  J Mol Evol       Date:  1994-10       Impact factor: 2.395

7.  Comparison between the complete mtDNA sequences of the blue and the fin whale, two species that can hybridize in nature.

Authors:  U Arnason; A Gullberg
Journal:  J Mol Evol       Date:  1993-10       Impact factor: 2.395

8.  RNA editing of a conserved reading frame in plant mitochondria increases its similarity to two overlapping reading frames in Escherichia coli.

Authors:  S Sünkel; A Brennicke; V Knoop
Journal:  Mol Gen Genet       Date:  1994-01

9.  A novel mitochondrial genome organization for the blue mussel, Mytilus edulis.

Authors:  R J Hoffmann; J L Boore; W M Brown
Journal:  Genetics       Date:  1992-06       Impact factor: 4.562

10.  The complete mitochondrial genome of Deracantha onos (Orthoptera: Bradyporidae).

Authors:  Zhijun Zhou; Yuan Huang; Fuming Shi; Haiyan Ye
Journal:  Mol Biol Rep       Date:  2007-09-23       Impact factor: 2.316

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