Literature DB >> 22347127

Ethyl 4-{[3-(adamantan-1-yl)-4-phenyl-5-sulfanyl-idene-4,5-dihydro-1H-1,2,4-triazol-1-yl]meth-yl}piperazine-1-carboxyl-ate.

Ebtehal S Al-Abdullah, Hanadi H Asiri, Ali A El-Emam, Seik Weng Ng.   

Abstract

The title mol-ecule, C(26)H(35)N(5)O(2)S, displays a chair-shaped piperazine ring, as well as a planar triazole ring whose phenyl substituent is perpendicular to the mean plane of the five-membered ring [dihedral angle = 90.00 (13)°]. The methyl-ene substituent on the piperazine ring occupies an equatorial site. Weak inter-molecular C-H⋯O hydrogen bonding is present in the crystal structure. The crystal studied was a non-merohedral twin, with a 33.9 (3)% minor component.

Entities:  

Year:  2012        PMID: 22347127      PMCID: PMC3275271          DOI: 10.1107/S1600536811055668

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and application of the title compound, see: El-Emam & Ibrahim (1991 ▶). For the separation of non-morohedrally twinned diffraction data, see: Spek (2009 ▶).

Experimental

Crystal data

C26H35N5O2S M = 481.65 Monoclinic, a = 12.0469 (6) Å b = 20.9213 (10) Å c = 10.3249 (5) Å β = 109.851 (6)° V = 2447.6 (2) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 100 K 0.30 × 0.20 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.952, T max = 0.984 17138 measured reflections 5655 independent reflections 4588 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.156 S = 1.11 5655 reflections 308 parameters H-atom parameters constrained Δρmax = 0.92 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055668/xu5418sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055668/xu5418Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811055668/xu5418Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H35N5O2SF(000) = 1032
Mr = 481.65Dx = 1.307 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5944 reflections
a = 12.0469 (6) Åθ = 2.3–27.5°
b = 20.9213 (10) ŵ = 0.17 mm1
c = 10.3249 (5) ÅT = 100 K
β = 109.851 (6)°Prism, colorless
V = 2447.6 (2) Å30.30 × 0.20 × 0.10 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector5655 independent reflections
Radiation source: SuperNova (Mo) X-ray Source4588 reflections with I > 2σ(I)
MirrorRint = 0.046
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.3°
ω scanh = −15→15
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −27→27
Tmin = 0.952, Tmax = 0.984l = −10→13
17138 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0559P)2 + 1.7988P] where P = (Fo2 + 2Fc2)/3
5655 reflections(Δ/σ)max = 0.001
308 parametersΔρmax = 0.92 e Å3
0 restraintsΔρmin = −0.40 e Å3
xyzUiso*/Ueq
S11.07961 (6)0.35628 (3)0.77520 (7)0.02400 (17)
N21.06373 (17)0.35443 (10)0.3905 (2)0.0199 (4)
N11.14387 (16)0.41508 (9)0.5741 (2)0.0162 (4)
N31.03774 (17)0.33163 (10)0.5027 (2)0.0191 (4)
N40.85438 (18)0.27336 (10)0.4214 (2)0.0221 (5)
N50.61492 (19)0.24428 (11)0.3815 (3)0.0304 (5)
O10.47688 (16)0.25081 (9)0.4818 (2)0.0302 (4)
O20.50958 (18)0.15641 (9)0.3949 (2)0.0334 (5)
C11.0859 (2)0.36674 (11)0.6181 (3)0.0185 (5)
C21.12871 (19)0.40508 (11)0.4359 (2)0.0161 (5)
C31.2096 (2)0.46416 (11)0.6668 (2)0.0158 (5)
C41.1530 (2)0.52024 (12)0.6799 (3)0.0197 (5)
H41.07160.52620.62880.024*
C51.2166 (2)0.56774 (13)0.7686 (3)0.0243 (6)
H51.17900.60650.77840.029*
C61.3355 (2)0.55824 (14)0.8428 (3)0.0263 (6)
H61.37960.59060.90290.032*
C71.3895 (2)0.50143 (14)0.8290 (3)0.0265 (6)
H71.47070.49510.88030.032*
C81.3270 (2)0.45372 (12)0.7418 (2)0.0197 (5)
H81.36420.41460.73370.024*
C91.18374 (19)0.44264 (11)0.3488 (2)0.0157 (5)
C101.1833 (2)0.51576 (12)0.3709 (3)0.0181 (5)
H10A1.10110.53090.34920.022*
H10B1.22730.52590.46860.022*
C111.2406 (2)0.55027 (12)0.2784 (3)0.0190 (5)
H111.23980.59740.29430.023*
C121.1715 (2)0.53586 (12)0.1271 (3)0.0226 (5)
H12A1.20810.55830.06740.027*
H12B1.08930.55120.10350.027*
C131.1723 (2)0.46359 (13)0.1033 (3)0.0243 (6)
H131.12700.45390.00450.029*
C141.1149 (2)0.42896 (13)0.1953 (3)0.0226 (5)
H14A1.11400.38240.17820.027*
H14B1.03220.44350.17230.027*
C151.3685 (2)0.52770 (12)0.3139 (3)0.0211 (5)
H15A1.40620.55040.25550.025*
H15B1.41360.53760.41140.025*
C161.3704 (2)0.45559 (12)0.2898 (3)0.0231 (5)
H161.45380.44080.31220.028*
C171.2999 (2)0.44045 (13)0.1382 (3)0.0260 (6)
H17A1.33690.46200.07770.031*
H17B1.30080.39380.12240.031*
C181.3131 (2)0.42047 (12)0.3820 (3)0.0209 (5)
H18A1.35840.42930.47990.025*
H18B1.31490.37380.36690.025*
C190.9811 (2)0.26971 (11)0.4941 (3)0.0214 (5)
H19A0.99570.25310.58820.026*
H19B1.01650.23930.44570.026*
C200.8097 (2)0.20785 (13)0.3899 (3)0.0288 (6)
H20A0.82200.18400.47640.035*
H20B0.85310.18560.33720.035*
C210.6788 (2)0.21007 (15)0.3057 (4)0.0373 (7)
H21A0.66710.23180.21690.045*
H21B0.64760.16600.28590.045*
C220.6601 (2)0.30815 (13)0.4241 (3)0.0260 (6)
H22A0.61900.32680.48360.031*
H22B0.64440.33580.34200.031*
C230.7922 (2)0.30593 (12)0.5025 (3)0.0244 (6)
H23A0.82290.35000.52370.029*
H23B0.80700.28310.59080.029*
C240.5325 (2)0.21268 (12)0.4181 (3)0.0244 (6)
C250.3970 (3)0.21595 (15)0.5362 (4)0.0396 (8)
H25A0.44300.18850.61410.047*
H25B0.34390.18830.46370.047*
C260.3270 (3)0.26259 (15)0.5833 (3)0.0378 (7)
H26A0.27170.23980.61780.057*
H26B0.28290.29010.50610.057*
H26C0.38000.28890.65720.057*
U11U22U33U12U13U23
S10.0274 (3)0.0241 (3)0.0246 (3)−0.0048 (2)0.0142 (3)0.0009 (3)
N20.0183 (10)0.0185 (10)0.0267 (11)−0.0019 (8)0.0124 (9)−0.0006 (9)
N10.0144 (9)0.0165 (10)0.0198 (10)−0.0024 (7)0.0087 (8)−0.0013 (8)
N30.0194 (10)0.0172 (10)0.0254 (11)−0.0037 (8)0.0136 (9)−0.0013 (9)
N40.0216 (10)0.0192 (10)0.0295 (12)−0.0051 (8)0.0139 (9)−0.0057 (9)
N50.0229 (11)0.0304 (12)0.0428 (14)−0.0083 (9)0.0178 (10)−0.0138 (11)
O10.0272 (10)0.0253 (10)0.0445 (12)−0.0067 (8)0.0206 (9)−0.0046 (9)
O20.0336 (11)0.0199 (10)0.0443 (12)−0.0039 (8)0.0100 (9)−0.0032 (9)
C10.0135 (11)0.0154 (11)0.0288 (13)0.0002 (8)0.0101 (10)−0.0001 (10)
C20.0130 (10)0.0156 (11)0.0208 (12)0.0002 (8)0.0074 (9)−0.0009 (9)
C30.0151 (11)0.0177 (11)0.0159 (11)−0.0037 (9)0.0068 (9)0.0011 (9)
C40.0171 (11)0.0222 (13)0.0204 (12)−0.0007 (9)0.0073 (10)−0.0004 (10)
C50.0312 (14)0.0222 (13)0.0238 (13)−0.0026 (10)0.0150 (11)−0.0035 (11)
C60.0275 (13)0.0327 (15)0.0201 (13)−0.0164 (11)0.0098 (11)−0.0058 (11)
C70.0152 (11)0.0454 (17)0.0182 (12)−0.0065 (11)0.0049 (10)0.0013 (12)
C80.0182 (11)0.0257 (13)0.0168 (12)0.0018 (9)0.0081 (10)0.0047 (10)
C90.0139 (10)0.0168 (11)0.0179 (11)−0.0017 (8)0.0074 (9)−0.0009 (9)
C100.0187 (11)0.0180 (12)0.0198 (12)−0.0007 (9)0.0094 (10)−0.0009 (10)
C110.0218 (12)0.0166 (11)0.0209 (12)−0.0002 (9)0.0103 (10)0.0021 (10)
C120.0214 (12)0.0278 (13)0.0200 (12)0.0019 (10)0.0089 (10)0.0055 (11)
C130.0263 (13)0.0317 (14)0.0170 (12)−0.0070 (11)0.0100 (11)−0.0046 (11)
C140.0210 (12)0.0280 (13)0.0214 (13)−0.0078 (10)0.0108 (11)−0.0052 (11)
C150.0189 (11)0.0236 (13)0.0225 (12)−0.0055 (9)0.0094 (10)0.0013 (10)
C160.0185 (11)0.0245 (13)0.0308 (14)0.0035 (10)0.0144 (11)0.0066 (11)
C170.0328 (14)0.0221 (13)0.0325 (15)−0.0021 (11)0.0234 (12)−0.0031 (11)
C180.0158 (11)0.0223 (12)0.0277 (13)0.0033 (9)0.0114 (10)0.0068 (11)
C190.0221 (12)0.0147 (12)0.0301 (14)−0.0041 (9)0.0124 (11)−0.0018 (10)
C200.0298 (14)0.0217 (13)0.0408 (16)−0.0058 (10)0.0199 (13)−0.0115 (12)
C210.0288 (15)0.0368 (17)0.0490 (19)−0.0089 (12)0.0165 (14)−0.0236 (15)
C220.0241 (13)0.0228 (13)0.0357 (15)−0.0023 (10)0.0164 (12)−0.0019 (12)
C230.0241 (13)0.0194 (13)0.0339 (15)−0.0052 (10)0.0152 (12)−0.0085 (11)
C240.0193 (12)0.0219 (13)0.0295 (14)−0.0001 (10)0.0051 (11)0.0001 (11)
C250.0350 (16)0.0367 (17)0.053 (2)−0.0081 (13)0.0231 (15)0.0045 (15)
C260.0297 (15)0.0428 (18)0.0458 (18)0.0003 (13)0.0192 (14)0.0069 (15)
S1—C11.664 (3)C11—H111.0000
N2—C21.306 (3)C12—C131.532 (4)
N2—N31.384 (3)C12—H12A0.9900
N1—C21.392 (3)C12—H12B0.9900
N1—C11.390 (3)C13—C141.533 (3)
N1—C31.443 (3)C13—C171.534 (4)
N3—C11.351 (3)C13—H131.0000
N3—C191.453 (3)C14—H14A0.9900
N4—C191.457 (3)C14—H14B0.9900
N4—C231.467 (3)C15—C161.530 (3)
N4—C201.468 (3)C15—H15A0.9900
N5—C241.350 (3)C15—H15B0.9900
N5—C221.453 (3)C16—C171.539 (4)
N5—C211.457 (4)C16—C181.539 (3)
O1—C241.348 (3)C16—H161.0000
O1—C251.463 (3)C17—H17A0.9900
O2—C241.214 (3)C17—H17B0.9900
C2—C91.507 (3)C18—H18A0.9900
C3—C81.380 (3)C18—H18B0.9900
C3—C41.386 (3)C19—H19A0.9900
C4—C51.392 (4)C19—H19B0.9900
C4—H40.9500C20—C211.522 (4)
C5—C61.390 (4)C20—H20A0.9900
C5—H50.9500C20—H20B0.9900
C6—C71.385 (4)C21—H21A0.9900
C6—H60.9500C21—H21B0.9900
C7—C81.383 (4)C22—C231.521 (3)
C7—H70.9500C22—H22A0.9900
C8—H80.9500C22—H22B0.9900
C9—C101.547 (3)C23—H23A0.9900
C9—C141.546 (3)C23—H23B0.9900
C9—C181.548 (3)C25—C261.476 (4)
C10—C111.536 (3)C25—H25A0.9900
C10—H10A0.9900C25—H25B0.9900
C10—H10B0.9900C26—H26A0.9800
C11—C121.530 (3)C26—H26B0.9800
C11—C151.532 (3)C26—H26C0.9800
C2—N2—N3104.9 (2)C9—C14—H14B109.6
C2—N1—C1108.66 (19)H14A—C14—H14B108.1
C2—N1—C3129.67 (19)C16—C15—C11109.51 (19)
C1—N1—C3121.6 (2)C16—C15—H15A109.8
C1—N3—N2113.53 (19)C11—C15—H15A109.8
C1—N3—C19126.2 (2)C16—C15—H15B109.8
N2—N3—C19119.4 (2)C11—C15—H15B109.8
C19—N4—C23112.3 (2)H15A—C15—H15B108.2
C19—N4—C20107.84 (19)C15—C16—C17109.6 (2)
C23—N4—C20109.9 (2)C15—C16—C18109.6 (2)
C24—N5—C22126.9 (2)C17—C16—C18108.8 (2)
C24—N5—C21118.8 (2)C15—C16—H16109.6
C22—N5—C21113.7 (2)C17—C16—H16109.6
C24—O1—C25113.1 (2)C18—C16—H16109.6
N3—C1—N1102.8 (2)C13—C17—C16109.7 (2)
N3—C1—S1129.78 (19)C13—C17—H17A109.7
N1—C1—S1127.46 (19)C16—C17—H17A109.7
N2—C2—N1110.1 (2)C13—C17—H17B109.7
N2—C2—C9122.7 (2)C16—C17—H17B109.7
N1—C2—C9127.1 (2)H17A—C17—H17B108.2
C8—C3—C4121.6 (2)C16—C18—C9110.43 (19)
C8—C3—N1119.1 (2)C16—C18—H18A109.6
C4—C3—N1119.3 (2)C9—C18—H18A109.6
C3—C4—C5119.3 (2)C16—C18—H18B109.6
C3—C4—H4120.4C9—C18—H18B109.6
C5—C4—H4120.4H18A—C18—H18B108.1
C6—C5—C4119.7 (2)N3—C19—N4111.9 (2)
C6—C5—H5120.2N3—C19—H19A109.2
C4—C5—H5120.2N4—C19—H19A109.2
C7—C6—C5119.9 (2)N3—C19—H19B109.2
C7—C6—H6120.1N4—C19—H19B109.2
C5—C6—H6120.1H19A—C19—H19B107.9
C6—C7—C8121.0 (2)N4—C20—C21109.2 (2)
C6—C7—H7119.5N4—C20—H20A109.8
C8—C7—H7119.5C21—C20—H20A109.8
C3—C8—C7118.6 (2)N4—C20—H20B109.8
C3—C8—H8120.7C21—C20—H20B109.8
C7—C8—H8120.7H20A—C20—H20B108.3
C2—C9—C10113.77 (19)N5—C21—C20110.0 (2)
C2—C9—C14108.89 (19)N5—C21—H21A109.7
C10—C9—C14107.90 (19)C20—C21—H21A109.7
C2—C9—C18108.98 (19)N5—C21—H21B109.7
C10—C9—C18108.48 (19)C20—C21—H21B109.7
C14—C9—C18108.7 (2)H21A—C21—H21B108.2
C11—C10—C9110.37 (19)N5—C22—C23110.5 (2)
C11—C10—H10A109.6N5—C22—H22A109.6
C9—C10—H10A109.6C23—C22—H22A109.6
C11—C10—H10B109.6N5—C22—H22B109.6
C9—C10—H10B109.6C23—C22—H22B109.6
H10A—C10—H10B108.1H22A—C22—H22B108.1
C12—C11—C15109.8 (2)N4—C23—C22110.8 (2)
C12—C11—C10109.8 (2)N4—C23—H23A109.5
C15—C11—C10109.5 (2)C22—C23—H23A109.5
C12—C11—H11109.2N4—C23—H23B109.5
C15—C11—H11109.2C22—C23—H23B109.5
C10—C11—H11109.2H23A—C23—H23B108.1
C11—C12—C13109.1 (2)O2—C24—O1123.5 (2)
C11—C12—H12A109.9O2—C24—N5124.0 (3)
C13—C12—H12A109.9O1—C24—N5112.4 (2)
C11—C12—H12B109.9O1—C25—C26108.7 (2)
C13—C12—H12B109.9O1—C25—H25A109.9
H12A—C12—H12B108.3C26—C25—H25A109.9
C14—C13—C12109.8 (2)O1—C25—H25B109.9
C14—C13—C17109.4 (2)C26—C25—H25B109.9
C12—C13—C17109.5 (2)H25A—C25—H25B108.3
C14—C13—H13109.4C25—C26—H26A109.5
C12—C13—H13109.4C25—C26—H26B109.5
C17—C13—H13109.4H26A—C26—H26B109.5
C13—C14—C9110.48 (19)C25—C26—H26C109.5
C13—C14—H14A109.6H26A—C26—H26C109.5
C9—C14—H14A109.6H26B—C26—H26C109.5
C13—C14—H14B109.6
C2—N2—N3—C1−0.4 (3)C11—C12—C13—C1459.8 (3)
C2—N2—N3—C19−170.7 (2)C11—C12—C13—C17−60.3 (3)
N2—N3—C1—N11.0 (3)C12—C13—C14—C9−60.4 (3)
C19—N3—C1—N1170.5 (2)C17—C13—C14—C959.8 (3)
N2—N3—C1—S1−178.88 (18)C2—C9—C14—C13−177.0 (2)
C19—N3—C1—S1−9.4 (4)C10—C9—C14—C1359.1 (3)
C2—N1—C1—N3−1.2 (2)C18—C9—C14—C13−58.4 (3)
C3—N1—C1—N3−179.45 (19)C12—C11—C15—C16−60.3 (3)
C2—N1—C1—S1178.72 (18)C10—C11—C15—C1660.4 (3)
C3—N1—C1—S10.5 (3)C11—C15—C16—C1759.3 (3)
N3—N2—C2—N1−0.4 (2)C11—C15—C16—C18−60.1 (3)
N3—N2—C2—C9175.8 (2)C14—C13—C17—C16−60.6 (3)
C1—N1—C2—N21.0 (3)C12—C13—C17—C1659.7 (3)
C3—N1—C2—N2179.1 (2)C15—C16—C17—C13−59.2 (3)
C1—N1—C2—C9−175.0 (2)C18—C16—C17—C1360.6 (3)
C3—N1—C2—C93.1 (4)C15—C16—C18—C959.7 (3)
C2—N1—C3—C8−89.4 (3)C17—C16—C18—C9−60.1 (3)
C1—N1—C3—C888.4 (3)C2—C9—C18—C16177.3 (2)
C2—N1—C3—C491.4 (3)C10—C9—C18—C16−58.3 (3)
C1—N1—C3—C4−90.7 (3)C14—C9—C18—C1658.8 (3)
C8—C3—C4—C51.3 (4)C1—N3—C19—N4110.8 (3)
N1—C3—C4—C5−179.6 (2)N2—N3—C19—N4−80.2 (3)
C3—C4—C5—C6−0.2 (4)C23—N4—C19—N3−71.6 (3)
C4—C5—C6—C7−0.6 (4)C20—N4—C19—N3167.1 (2)
C5—C6—C7—C80.2 (4)C19—N4—C20—C21−176.4 (2)
C4—C3—C8—C7−1.7 (4)C23—N4—C20—C2160.9 (3)
N1—C3—C8—C7179.2 (2)C24—N5—C21—C20−117.4 (3)
C6—C7—C8—C30.9 (4)C22—N5—C21—C2055.1 (3)
N2—C2—C9—C10141.9 (2)N4—C20—C21—N5−58.0 (3)
N1—C2—C9—C10−42.6 (3)C24—N5—C22—C23118.9 (3)
N2—C2—C9—C1421.5 (3)C21—N5—C22—C23−52.9 (3)
N1—C2—C9—C14−163.0 (2)C19—N4—C23—C22−179.4 (2)
N2—C2—C9—C18−96.9 (3)C20—N4—C23—C22−59.3 (3)
N1—C2—C9—C1878.6 (3)N5—C22—C23—N454.2 (3)
C2—C9—C10—C11−179.92 (19)C25—O1—C24—O27.5 (4)
C14—C9—C10—C11−59.0 (2)C25—O1—C24—N5−173.4 (2)
C18—C9—C10—C1158.6 (2)C22—N5—C24—O2−169.5 (3)
C9—C10—C11—C1260.4 (2)C21—N5—C24—O21.9 (4)
C9—C10—C11—C15−60.2 (3)C22—N5—C24—O111.4 (4)
C15—C11—C12—C1360.6 (3)C21—N5—C24—O1−177.2 (2)
C10—C11—C12—C13−59.9 (3)C24—O1—C25—C26−171.0 (2)
D—H···AD—HH···AD···AD—H···A
C6—H6···O2i0.952.483.406 (3)166
C8—H8···O2ii0.952.463.207 (3)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O2i0.952.483.406 (3)166
C8—H8⋯O2ii0.952.463.207 (3)135

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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3.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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