Literature DB >> 22904841

3-(Adamantan-1-yl)-4-ethyl-1-[(4-phenyl-piperazin-1-yl)meth-yl]-1H-1,2,4-triazole-5(4H)-thione.

Ali A El-Emam, Ebtehal S Al-Abdullah, Hanaa M Al-Tuwaijri, Mohammed Said-Abdelbaky, Santiago García-Granda.   

Abstract

The title compound, C(25)H(35)N(5)S, has an approximately C-shaped conformation. The dihedral angle between the triazole and phenyl planes is 79.5 (2)°. The crystal structure consists of infinite chains parallel to the b axis, constructed by C-H⋯S hydrogen bonds between translation-related mol-ecules. Adjacent chains are linked via weak C-H⋯C inter-actions between the adamantyl and phenyl groups.

Entities:  

Year:  2012        PMID: 22904841      PMCID: PMC3414308          DOI: 10.1107/S160053681202990X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of adamantane derivatives and adamantyl-1,2,4-triazoles, see: Vernier et al. (1969 ▶); Al-Deeb et al. (2006 ▶); Al-Omar et al. (2010 ▶); El-Emam & Ibrahim (1991 ▶); El-Emam et al. (2004 ▶); Kadi et al. (2007 ▶, 2010 ▶). For related adamantyl-1,2,4-triazole structures, see: Al-Tamimi et al. (2010 ▶); Al-Abdullah et al. (2012 ▶); El-Emam et al. (2012 ▶); Lahsasni et al. (2012 ▶).

Experimental

Crystal data

C25H35N5S M = 437.65 Orthorhombic, a = 27.382 (4) Å b = 6.5083 (7) Å c = 13.369 (2) Å V = 2382.4 (5) Å3 Z = 4 Cu Kα radiation μ = 1.36 mm−1 T = 293 K 0.16 × 0.06 × 0.02 mm

Data collection

Oxford Diffraction Xcalibur Gemini R diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.919, T max = 1.000 5844 measured reflections 3016 independent reflections 1828 reflections with I > 2σ(I) R int = 0.086

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.128 S = 1.00 3016 reflections 282 parameters 1 restraint H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 632 Friedel pairs Flack parameter: 0.00 (4) Data collection: CrysAlis CCD (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2010 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202990X/fy2061sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202990X/fy2061Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202990X/fy2061Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H35N5SF(000) = 944
Mr = 437.65Dx = 1.220 Mg m3
Orthorhombic, Pna21Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2c -2nCell parameters from 728 reflections
a = 27.382 (4) Åθ = 3.7–70.5°
b = 6.5083 (7) ŵ = 1.36 mm1
c = 13.369 (2) ÅT = 293 K
V = 2382.4 (5) Å3Prism, colourless
Z = 40.16 × 0.06 × 0.02 mm
Oxford Diffraction Xcalibur Gemini R diffractometer3016 independent reflections
Radiation source: Enhance (Cu) X-ray Source1828 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.086
Detector resolution: 10.2673 pixels mm-1θmax = 70.7°, θmin = 4.6°
ω scansh = −27→32
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −7→7
Tmin = 0.919, Tmax = 1.000l = −9→16
5844 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.128w = 1/[σ2(Fo2) + (0.0292P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
3016 reflectionsΔρmax = 0.17 e Å3
282 parametersΔρmin = −0.18 e Å3
1 restraintAbsolute structure: Flack (1983), 632 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.47530 (6)0.0990 (2)0.88657 (13)0.0661 (4)
N10.40642 (17)0.4993 (7)1.0508 (3)0.0559 (11)
N20.42569 (16)0.4251 (7)0.9622 (3)0.0533 (11)
N30.44288 (16)0.2016 (7)1.0746 (3)0.0495 (10)
N40.37594 (16)0.5467 (7)0.8271 (4)0.0536 (11)
N50.30519 (17)0.5670 (7)0.6693 (3)0.0540 (11)
C10.41610 (19)0.3589 (8)1.1182 (4)0.0486 (12)
C20.39947 (19)0.3789 (8)1.2243 (4)0.0498 (12)
C30.3646 (2)0.1977 (9)1.2515 (5)0.0634 (15)
H3A0.33700.19581.20600.076*
H3B0.38190.06811.24520.076*
C40.3465 (3)0.2256 (11)1.3600 (5)0.0765 (19)
H40.32530.11001.37760.092*
C50.3177 (2)0.4225 (11)1.3669 (6)0.0805 (19)
H5A0.30450.43781.43390.097*
H5B0.29060.41861.32020.097*
C60.3508 (3)0.6039 (11)1.3427 (5)0.0764 (19)
H60.33230.73221.34780.092*
C70.3692 (2)0.5759 (9)1.2349 (5)0.0671 (16)
H7A0.34160.57011.18970.081*
H7B0.38910.69321.21620.081*
C80.4414 (2)0.3859 (11)1.2987 (4)0.0672 (16)
H8A0.46270.49991.28240.081*
H8B0.46020.26011.29370.081*
C90.4223 (3)0.4110 (12)1.4070 (5)0.082 (2)
H90.44990.41531.45370.099*
C100.3897 (3)0.2300 (12)1.4314 (5)0.092 (2)
H10A0.37810.24131.49970.110*
H10B0.40810.10331.42540.110*
C110.3934 (3)0.6097 (11)1.4138 (5)0.089 (2)
H11A0.38150.62821.48160.107*
H11B0.41430.72501.39750.107*
C120.4659 (2)0.0198 (9)1.1198 (5)0.0650 (17)
H12A0.4599−0.09921.07790.078*
H12B0.4514−0.00601.18480.078*
C130.5207 (2)0.0501 (14)1.1319 (6)0.096 (3)
H13A0.5352−0.07451.15630.143*
H13B0.52670.15931.17860.143*
H13C0.53480.08471.06830.143*
C140.4485 (2)0.2439 (8)0.9739 (4)0.0487 (12)
C150.42363 (18)0.5519 (8)0.8724 (4)0.0561 (14)
H15A0.43180.69260.88950.067*
H15B0.44770.50310.82460.067*
C160.3704 (2)0.3810 (9)0.7556 (5)0.0640 (15)
H16A0.37840.25140.78750.077*
H16B0.39290.40130.70040.077*
C170.3181 (2)0.3728 (9)0.7154 (5)0.0670 (17)
H17A0.31530.26320.66660.080*
H17B0.29570.34360.76990.080*
C180.3126 (2)0.7352 (11)0.7401 (5)0.077 (2)
H18A0.29070.71840.79640.092*
H18B0.30490.86460.70780.092*
C190.3642 (2)0.7407 (10)0.7770 (5)0.0707 (17)
H19A0.38630.76190.72110.085*
H19B0.36830.85400.82340.085*
C200.2619 (2)0.5739 (9)0.6120 (4)0.0587 (14)
C210.2322 (2)0.4026 (11)0.5996 (4)0.0650 (16)
H210.23930.28100.63310.078*
C220.1913 (2)0.4140 (12)0.5361 (5)0.0732 (18)
H220.17190.29830.52600.088*
C230.1798 (2)0.5956 (12)0.4890 (5)0.0775 (19)
H230.15230.60350.44820.093*
C240.2089 (3)0.7651 (12)0.5023 (5)0.0766 (19)
H240.20060.88800.47110.092*
C250.2496 (2)0.7563 (10)0.5605 (4)0.0688 (16)
H250.26950.87140.56650.083*
U11U22U33U12U13U23
S10.0731 (8)0.0694 (8)0.0558 (8)0.0032 (8)0.0078 (9)−0.0078 (9)
N10.061 (3)0.059 (3)0.048 (3)0.003 (2)0.000 (2)−0.004 (2)
N20.059 (2)0.056 (3)0.045 (2)0.000 (2)0.003 (2)0.003 (2)
N30.053 (2)0.050 (2)0.046 (2)0.002 (2)−0.003 (2)−0.005 (2)
N40.056 (2)0.053 (3)0.052 (2)0.001 (2)−0.006 (2)0.001 (2)
N50.058 (3)0.048 (2)0.056 (3)−0.001 (2)−0.010 (2)0.004 (2)
C10.048 (3)0.046 (3)0.051 (3)−0.001 (2)−0.005 (3)0.005 (2)
C20.051 (3)0.047 (3)0.052 (3)−0.001 (3)−0.002 (3)−0.003 (2)
C30.073 (4)0.059 (3)0.058 (4)−0.006 (3)0.010 (3)−0.007 (3)
C40.102 (5)0.066 (4)0.062 (4)−0.014 (4)0.024 (4)−0.007 (3)
C50.078 (4)0.087 (5)0.077 (5)−0.008 (4)0.023 (4)−0.015 (4)
C60.089 (4)0.070 (4)0.070 (4)0.012 (4)0.016 (4)−0.011 (3)
C70.085 (4)0.054 (3)0.063 (4)0.011 (3)0.008 (3)−0.004 (3)
C80.066 (3)0.082 (4)0.055 (4)−0.000 (3)−0.005 (3)−0.011 (3)
C90.090 (4)0.106 (5)0.051 (4)0.007 (5)−0.012 (4)−0.012 (4)
C100.133 (7)0.087 (5)0.056 (4)0.025 (5)0.017 (5)0.003 (4)
C110.117 (6)0.078 (4)0.072 (5)−0.007 (5)0.012 (4)−0.030 (3)
C120.082 (4)0.057 (3)0.056 (3)0.018 (3)0.007 (4)0.010 (3)
C130.072 (4)0.143 (7)0.072 (4)0.038 (5)0.004 (4)0.019 (5)
C140.048 (3)0.055 (3)0.043 (3)−0.006 (3)0.001 (3)0.000 (2)
C150.058 (3)0.063 (3)0.048 (3)−0.002 (3)−0.000 (3)0.010 (3)
C160.071 (3)0.049 (3)0.072 (4)0.005 (3)−0.010 (3)−0.004 (3)
C170.077 (4)0.051 (3)0.073 (4)−0.002 (3)−0.015 (3)0.006 (3)
C180.083 (4)0.063 (4)0.084 (5)0.015 (4)−0.019 (4)−0.009 (4)
C190.084 (4)0.058 (4)0.070 (4)0.000 (4)−0.012 (4)0.005 (3)
C200.059 (3)0.062 (3)0.055 (3)0.006 (3)0.001 (3)−0.001 (3)
C210.061 (3)0.071 (4)0.062 (4)−0.006 (3)−0.002 (3)0.003 (3)
C220.061 (3)0.089 (5)0.070 (4)0.001 (4)−0.006 (3)−0.005 (4)
C230.069 (4)0.099 (6)0.064 (4)0.020 (4)−0.011 (3)−0.011 (4)
C240.086 (5)0.082 (5)0.062 (4)0.023 (4)−0.018 (4)−0.001 (4)
C250.077 (4)0.064 (4)0.065 (4)0.007 (3)−0.012 (4)0.006 (3)
S1—C141.670 (6)C9—C111.520 (10)
N1—C11.311 (7)C9—H90.9800
N1—N21.384 (6)C10—H10A0.9700
N2—C141.344 (7)C10—H10B0.9700
N2—C151.459 (7)C11—H11A0.9700
N3—C141.383 (7)C11—H11B0.9700
N3—C11.388 (7)C12—C131.522 (9)
N3—C121.471 (7)C12—H12A0.9700
N4—C151.440 (7)C12—H12B0.9700
N4—C161.449 (7)C13—H13A0.9600
N4—C191.465 (7)C13—H13B0.9600
N5—C201.412 (7)C13—H13C0.9600
N5—C171.450 (8)C15—H15A0.9700
N5—C181.461 (8)C15—H15B0.9700
C1—C21.495 (8)C16—C171.530 (8)
C2—C81.518 (8)C16—H16A0.9700
C2—C71.533 (8)C16—H16B0.9700
C2—C31.560 (8)C17—H17A0.9700
C3—C41.544 (8)C17—H17B0.9700
C3—H3A0.9700C18—C191.496 (9)
C3—H3B0.9700C18—H18A0.9700
C4—C51.509 (9)C18—H18B0.9700
C4—C101.520 (10)C19—H19A0.9700
C4—H40.9800C19—H19B0.9700
C5—C61.525 (9)C20—C211.390 (8)
C5—H5A0.9700C20—C251.413 (8)
C5—H5B0.9700C21—C221.408 (9)
C6—C111.504 (10)C21—H210.9300
C6—C71.538 (9)C22—C231.376 (10)
C6—H60.9800C22—H220.9300
C7—H7A0.9700C23—C241.373 (10)
C7—H7B0.9700C23—H230.9300
C8—C91.548 (9)C24—C251.361 (9)
C8—H8A0.9700C24—H240.9300
C8—H8B0.9700C25—H250.9300
C9—C101.514 (11)
C1—N1—N2105.6 (4)C6—C11—C9110.2 (6)
C14—N2—N1112.6 (4)C6—C11—H11A109.6
C14—N2—C15127.6 (5)C9—C11—H11A109.6
N1—N2—C15119.5 (4)C6—C11—H11B109.6
C14—N3—C1108.7 (4)C9—C11—H11B109.6
C14—N3—C12120.9 (5)H11A—C11—H11B108.1
C1—N3—C12130.3 (4)N3—C12—C13111.2 (5)
C15—N4—C16112.9 (5)N3—C12—H12A109.4
C15—N4—C19111.8 (5)C13—C12—H12A109.4
C16—N4—C19108.5 (5)N3—C12—H12B109.4
C20—N5—C17117.6 (5)C13—C12—H12B109.4
C20—N5—C18116.4 (5)H12A—C12—H12B108.0
C17—N5—C18110.1 (5)C12—C13—H13A109.5
N1—C1—N3109.4 (5)C12—C13—H13B109.5
N1—C1—C2122.0 (5)H13A—C13—H13B109.5
N3—C1—C2128.6 (5)C12—C13—H13C109.5
C1—C2—C8113.2 (4)H13A—C13—H13C109.5
C1—C2—C7108.9 (5)H13B—C13—H13C109.5
C8—C2—C7108.8 (5)N2—C14—N3103.6 (5)
C1—C2—C3110.0 (4)N2—C14—S1128.2 (4)
C8—C2—C3109.4 (5)N3—C14—S1128.1 (4)
C7—C2—C3106.3 (5)N4—C15—N2111.6 (4)
C4—C3—C2109.0 (5)N4—C15—H15A109.3
C4—C3—H3A109.9N2—C15—H15A109.3
C2—C3—H3A109.9N4—C15—H15B109.3
C4—C3—H3B109.9N2—C15—H15B109.3
C2—C3—H3B109.9H15A—C15—H15B108.0
H3A—C3—H3B108.3N4—C16—C17110.8 (5)
C5—C4—C10110.7 (6)N4—C16—H16A109.5
C5—C4—C3109.0 (6)C17—C16—H16A109.5
C10—C4—C3110.0 (6)N4—C16—H16B109.5
C5—C4—H4109.0C17—C16—H16B109.5
C10—C4—H4109.0H16A—C16—H16B108.1
C3—C4—H4109.0N5—C17—C16110.3 (5)
C4—C5—C6109.4 (5)N5—C17—H17A109.6
C4—C5—H5A109.8C16—C17—H17A109.6
C6—C5—H5A109.8N5—C17—H17B109.6
C4—C5—H5B109.8C16—C17—H17B109.6
C6—C5—H5B109.8H17A—C17—H17B108.1
H5A—C5—H5B108.2N5—C18—C19111.3 (5)
C11—C6—C5110.3 (6)N5—C18—H18A109.4
C11—C6—C7110.0 (5)C19—C18—H18A109.4
C5—C6—C7107.6 (6)N5—C18—H18B109.4
C11—C6—H6109.6C19—C18—H18B109.4
C5—C6—H6109.6H18A—C18—H18B108.0
C7—C6—H6109.6N4—C19—C18109.7 (6)
C2—C7—C6111.2 (5)N4—C19—H19A109.7
C2—C7—H7A109.4C18—C19—H19A109.7
C6—C7—H7A109.4N4—C19—H19B109.7
C2—C7—H7B109.4C18—C19—H19B109.7
C6—C7—H7B109.4H19A—C19—H19B108.2
H7A—C7—H7B108.0C21—C20—N5122.0 (5)
C2—C8—C9111.2 (5)C21—C20—C25118.4 (5)
C2—C8—H8A109.4N5—C20—C25119.4 (6)
C9—C8—H8A109.4C20—C21—C22119.7 (6)
C2—C8—H8B109.4C20—C21—H21120.1
C9—C8—H8B109.4C22—C21—H21120.1
H8A—C8—H8B108.0C23—C22—C21120.2 (7)
C10—C9—C11110.0 (7)C23—C22—H22119.9
C10—C9—C8108.5 (6)C21—C22—H22119.9
C11—C9—C8108.8 (6)C24—C23—C22119.9 (6)
C10—C9—H9109.9C24—C23—H23120.0
C11—C9—H9109.9C22—C23—H23120.0
C8—C9—H9109.9C25—C24—C23121.1 (7)
C9—C10—C4109.8 (6)C25—C24—H24119.5
C9—C10—H10A109.7C23—C24—H24119.5
C4—C10—H10A109.7C24—C25—C20120.6 (7)
C9—C10—H10B109.7C24—C25—H25119.7
C4—C10—H10B109.7C20—C25—H25119.7
H10A—C10—H10B108.2
C1—N1—N2—C14−1.9 (6)C10—C9—C11—C6−58.7 (7)
C1—N1—N2—C15−176.4 (5)C8—C9—C11—C660.0 (8)
N2—N1—C1—N32.4 (6)C14—N3—C12—C1374.2 (7)
N2—N1—C1—C2−177.8 (5)C1—N3—C12—C13−101.9 (7)
C14—N3—C1—N1−2.2 (6)N1—N2—C14—N30.5 (6)
C12—N3—C1—N1174.2 (5)C15—N2—C14—N3174.4 (5)
C14—N3—C1—C2178.0 (5)N1—N2—C14—S1178.2 (4)
C12—N3—C1—C2−5.6 (9)C15—N2—C14—S1−7.9 (9)
N1—C1—C2—C8−118.6 (6)C1—N3—C14—N21.0 (6)
N3—C1—C2—C861.1 (8)C12—N3—C14—N2−175.9 (5)
N1—C1—C2—C72.5 (7)C1—N3—C14—S1−176.7 (4)
N3—C1—C2—C7−177.7 (5)C12—N3—C14—S16.4 (8)
N1—C1—C2—C3118.7 (6)C16—N4—C15—N2−88.9 (6)
N3—C1—C2—C3−61.5 (7)C19—N4—C15—N2148.5 (5)
C1—C2—C3—C4−178.0 (5)C14—N2—C15—N4107.8 (6)
C8—C2—C3—C457.1 (7)N1—N2—C15—N4−78.7 (6)
C7—C2—C3—C4−60.2 (7)C15—N4—C16—C17175.9 (5)
C2—C3—C4—C562.4 (7)C19—N4—C16—C17−59.7 (6)
C2—C3—C4—C10−59.2 (7)C20—N5—C17—C16168.3 (5)
C10—C4—C5—C658.4 (7)C18—N5—C17—C16−55.2 (7)
C3—C4—C5—C6−62.7 (8)N4—C16—C17—N557.9 (7)
C4—C5—C6—C11−58.6 (7)C20—N5—C18—C19−165.7 (5)
C4—C5—C6—C761.4 (8)C17—N5—C18—C1957.2 (7)
C1—C2—C7—C6179.7 (5)C15—N4—C19—C18−174.4 (5)
C8—C2—C7—C6−56.5 (7)C16—N4—C19—C1860.4 (6)
C3—C2—C7—C661.2 (6)N5—C18—C19—N4−59.8 (7)
C11—C6—C7—C258.1 (8)C17—N5—C20—C210.2 (8)
C5—C6—C7—C2−62.1 (7)C18—N5—C20—C21−133.6 (6)
C1—C2—C8—C9178.9 (5)C17—N5—C20—C25−176.0 (6)
C7—C2—C8—C957.6 (7)C18—N5—C20—C2550.2 (7)
C3—C2—C8—C9−58.2 (7)N5—C20—C21—C22−175.6 (5)
C2—C8—C9—C1059.9 (8)C25—C20—C21—C220.6 (8)
C2—C8—C9—C11−59.7 (8)C20—C21—C22—C23−2.1 (9)
C11—C9—C10—C458.0 (7)C21—C22—C23—C241.3 (10)
C8—C9—C10—C4−60.8 (8)C22—C23—C24—C251.0 (10)
C5—C4—C10—C9−58.6 (7)C23—C24—C25—C20−2.5 (10)
C3—C4—C10—C961.9 (8)C21—C20—C25—C241.7 (9)
C5—C6—C11—C958.9 (7)N5—C20—C25—C24178.0 (6)
C7—C6—C11—C9−59.6 (8)
D—H···AD—HH···AD···AD—H···A
C15—H15A···S1i0.972.903.836 (5)162
C5—H5A···C20ii0.972.803.750 (6)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C15—H15A⋯S1i 0.972.903.836 (5)162
C5—H5A⋯C20ii 0.972.803.750 (6)167

Symmetry codes: (i) ; (ii) .

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