Literature DB >> 24454244

N-(Adamantan-1-yl)-1,2,3,4-tetra-hydro-iso-quinoline-2-carbo-thio-amide.

Ali A El-Emam1, Ebtehal S Al-Abdullah1, Hanaa M Al-Tuwaijri1, C S Chidan Kumar2, Hoong-Kun Fun1.   

Abstract

In the title compound, C20H26N2S, the n class="Chemical">N-containing six-membered ring adopts a boat conformation and the dihedral angle between the thio-carbamide group and the benzene ring is 49.67 (9)°. An intra-molecular C-H⋯S hydrogen bond generates an S(6) ring motif. The N-H group is sterically hindered and there are no significant inter-molecular inter-actions beyond van der Waals contacts.

Entities:  

Year:  2013        PMID: 24454244      PMCID: PMC3885068          DOI: 10.1107/S1600536813031516

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and biological background, see: Al-Abdullah et al. (2012 ▶); El-Emam et al. (2012 ▶); Al-Tamimi et al. (2013 ▶).

Experimental

Crystal data

C20H26N2S M = 326.49 Monoclinic, a = 19.1707 (5) Å b = 6.4106 (2) Å c = 14.2838 (3) Å β = 103.366 (2)° V = 1707.87 (8) Å3 Z = 4 Cu Kα radiation μ = 1.67 mm−1 T = 296 K 0.81 × 0.13 × 0.05 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.345, T max = 0.921 10894 measured reflections 2831 independent reflections 2351 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.114 S = 1.07 2831 reflections 212 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813031516/hb7163sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813031516/hb7163Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813031516/hb7163Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H26N2SF(000) = 704
Mr = 326.49Dx = 1.270 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 2009 reflections
a = 19.1707 (5) Åθ = 4.7–68.5°
b = 6.4106 (2) ŵ = 1.67 mm1
c = 14.2838 (3) ÅT = 296 K
β = 103.366 (2)°Needle, colorless
V = 1707.87 (8) Å30.81 × 0.13 × 0.05 mm
Z = 4
Bruker APEXII CCD diffractometer2831 independent reflections
Radiation source: fine-focus sealed tube2351 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
φ and ω scansθmax = 65.0°, θmin = 4.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −22→22
Tmin = 0.345, Tmax = 0.921k = −5→7
10894 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0467P)2 + 0.4078P] where P = (Fo2 + 2Fc2)/3
2831 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.28539 (3)0.53707 (8)0.87853 (4)0.04780 (18)
N10.31695 (8)0.8392 (2)1.01049 (11)0.0410 (4)
N20.22585 (9)0.9145 (3)0.88193 (13)0.0487 (4)
C10.30653 (10)1.0463 (3)1.04991 (15)0.0454 (5)
H1A0.25821.05551.05960.054*
H1B0.31181.15251.00370.054*
C20.35954 (10)1.0889 (3)1.14462 (14)0.0468 (5)
H2A0.35741.23521.16110.056*
H2B0.34661.00711.19520.056*
C30.43444 (10)1.0346 (3)1.13817 (13)0.0394 (4)
C40.49318 (11)1.1642 (3)1.16802 (14)0.0477 (5)
H4A0.48741.29611.19220.057*
C50.56065 (11)1.0963 (4)1.16170 (15)0.0541 (6)
H5A0.60021.18271.18190.065*
C60.56903 (11)0.9017 (4)1.12565 (15)0.0549 (6)
H6A0.61460.85561.12310.066*
C70.51028 (10)0.7734 (3)1.09301 (13)0.0485 (5)
H7A0.51620.64301.06740.058*
C80.44261 (10)0.8406 (3)1.09868 (13)0.0388 (4)
C90.37639 (10)0.7106 (3)1.06543 (14)0.0464 (5)
H9A0.38630.59771.02520.056*
H9B0.36260.65001.12070.056*
C100.27588 (9)0.7748 (3)0.92530 (14)0.0386 (4)
C110.17921 (9)0.9182 (3)0.78351 (14)0.0388 (4)
C120.13539 (11)1.1194 (3)0.77934 (17)0.0559 (6)
H12A0.16751.23790.79380.067*
H12B0.10691.11400.82720.067*
C130.08603 (11)1.1464 (3)0.67914 (16)0.0545 (6)
H13A0.05891.27640.67730.065*
C140.03443 (11)0.9647 (4)0.65865 (17)0.0556 (6)
H14A0.00290.98020.59530.067*
H14B0.00530.96100.70580.067*
C150.07696 (12)0.7641 (3)0.66319 (17)0.0580 (6)
H15A0.04370.64590.64970.070*
C160.12637 (10)0.7366 (3)0.76323 (15)0.0491 (5)
H16A0.09810.73280.81150.059*
H16B0.15230.60600.76610.059*
C170.12141 (15)0.7699 (4)0.58855 (17)0.0754 (8)
H17A0.09020.78300.52490.090*
H17B0.14830.64110.59080.090*
C180.17292 (14)0.9540 (5)0.60795 (19)0.0727 (8)
H18A0.20130.95860.55910.087*
C190.22293 (11)0.9277 (4)0.70823 (17)0.0599 (6)
H19A0.25060.80060.71010.072*
H19B0.25601.04420.72150.072*
C200.13032 (13)1.1555 (4)0.6051 (2)0.0729 (7)
H20A0.16291.27340.61810.087*
H20B0.09931.17400.54160.087*
H1N20.2278 (11)1.034 (4)0.9084 (15)0.051 (6)*
U11U22U33U12U13U23
S10.0513 (3)0.0321 (3)0.0554 (4)0.0024 (2)0.0028 (2)−0.0036 (2)
N10.0388 (8)0.0340 (9)0.0481 (10)0.0010 (6)0.0057 (7)−0.0023 (7)
N20.0455 (9)0.0361 (11)0.0575 (11)0.0066 (7)−0.0024 (8)−0.0109 (8)
C10.0437 (11)0.0419 (12)0.0509 (12)0.0046 (8)0.0117 (9)−0.0049 (8)
C20.0508 (12)0.0453 (12)0.0451 (12)0.0021 (9)0.0126 (9)−0.0060 (9)
C30.0456 (11)0.0434 (12)0.0290 (10)−0.0016 (8)0.0082 (8)0.0022 (7)
C40.0589 (12)0.0463 (12)0.0359 (11)−0.0082 (9)0.0067 (9)−0.0005 (8)
C50.0464 (12)0.0705 (16)0.0440 (12)−0.0172 (11)0.0076 (10)0.0007 (10)
C60.0420 (11)0.0819 (17)0.0419 (12)0.0021 (11)0.0121 (9)0.0031 (11)
C70.0528 (12)0.0557 (13)0.0363 (11)0.0108 (10)0.0088 (9)−0.0016 (9)
C80.0430 (10)0.0406 (11)0.0309 (10)0.0017 (8)0.0049 (8)0.0020 (7)
C90.0493 (11)0.0363 (11)0.0490 (12)0.0027 (9)0.0020 (9)0.0021 (8)
C100.0336 (9)0.0353 (10)0.0472 (12)−0.0029 (7)0.0101 (8)0.0012 (8)
C110.0333 (9)0.0306 (10)0.0501 (12)0.0003 (7)0.0046 (8)−0.0002 (8)
C120.0495 (12)0.0392 (13)0.0717 (15)0.0064 (9)−0.0010 (11)−0.0092 (10)
C130.0521 (12)0.0348 (12)0.0698 (15)0.0127 (9)0.0002 (11)0.0022 (9)
C140.0413 (11)0.0607 (15)0.0593 (14)0.0029 (9)0.0004 (10)0.0047 (10)
C150.0582 (13)0.0365 (13)0.0661 (15)−0.0082 (10)−0.0124 (11)0.0015 (10)
C160.0454 (11)0.0386 (12)0.0587 (13)−0.0052 (9)0.0024 (9)0.0102 (9)
C170.1000 (19)0.0659 (18)0.0500 (15)0.0366 (15)−0.0034 (14)−0.0084 (11)
C180.0681 (16)0.098 (2)0.0596 (16)0.0250 (14)0.0300 (13)0.0246 (14)
C190.0428 (11)0.0660 (16)0.0751 (16)0.0084 (10)0.0219 (11)0.0182 (12)
C200.0663 (15)0.0633 (17)0.0850 (18)0.0017 (12)0.0093 (14)0.0356 (13)
S1—C101.6906 (19)C11—C161.526 (2)
N1—C101.352 (2)C11—C121.533 (3)
N1—C11.473 (2)C12—C131.532 (3)
N1—C91.477 (2)C12—H12A0.9700
N2—C101.353 (2)C12—H12B0.9700
N2—C111.482 (2)C13—C201.503 (3)
N2—H1N20.85 (2)C13—C141.512 (3)
C1—C21.517 (3)C13—H13A0.9800
C1—H1A0.9700C14—C151.516 (3)
C1—H1B0.9700C14—H14A0.9700
C2—C31.501 (3)C14—H14B0.9700
C2—H2A0.9700C15—C171.511 (4)
C2—H2B0.9700C15—C161.531 (3)
C3—C41.385 (3)C15—H15A0.9800
C3—C81.389 (3)C16—H16A0.9700
C4—C51.387 (3)C16—H16B0.9700
C4—H4A0.9300C17—C181.522 (4)
C5—C61.373 (3)C17—H17A0.9700
C5—H5A0.9300C17—H17B0.9700
C6—C71.385 (3)C18—C201.524 (4)
C6—H6A0.9300C18—C191.538 (3)
C7—C81.387 (3)C18—H18A0.9800
C7—H7A0.9300C19—H19A0.9700
C8—C91.501 (3)C19—H19B0.9700
C9—H9A0.9700C20—H20A0.9700
C9—H9B0.9700C20—H20B0.9700
C11—C191.510 (3)
C10—N1—C1121.12 (15)C13—C12—H12A109.6
C10—N1—C9121.67 (16)C11—C12—H12B109.6
C1—N1—C9117.13 (15)C13—C12—H12B109.6
C10—N2—C11130.81 (17)H12A—C12—H12B108.1
C10—N2—H1N2116.1 (15)C20—C13—C14110.2 (2)
C11—N2—H1N2111.1 (15)C20—C13—C12109.55 (18)
N1—C1—C2112.39 (16)C14—C13—C12109.20 (18)
N1—C1—H1A109.1C20—C13—H13A109.3
C2—C1—H1A109.1C14—C13—H13A109.3
N1—C1—H1B109.1C12—C13—H13A109.3
C2—C1—H1B109.1C13—C14—C15108.90 (17)
H1A—C1—H1B107.9C13—C14—H14A109.9
C3—C2—C1110.89 (16)C15—C14—H14A109.9
C3—C2—H2A109.5C13—C14—H14B109.9
C1—C2—H2A109.5C15—C14—H14B109.9
C3—C2—H2B109.5H14A—C14—H14B108.3
C1—C2—H2B109.5C17—C15—C14109.51 (19)
H2A—C2—H2B108.0C17—C15—C16109.45 (18)
C4—C3—C8120.13 (18)C14—C15—C16110.37 (19)
C4—C3—C2124.29 (18)C17—C15—H15A109.2
C8—C3—C2115.58 (17)C14—C15—H15A109.2
C3—C4—C5119.7 (2)C16—C15—H15A109.2
C3—C4—H4A120.1C11—C16—C15109.25 (16)
C5—C4—H4A120.1C11—C16—H16A109.8
C6—C5—C4120.06 (19)C15—C16—H16A109.8
C6—C5—H5A120.0C11—C16—H16B109.8
C4—C5—H5A120.0C15—C16—H16B109.8
C5—C6—C7120.60 (19)H16A—C16—H16B108.3
C5—C6—H6A119.7C15—C17—C18109.80 (19)
C7—C6—H6A119.7C15—C17—H17A109.7
C6—C7—C8119.6 (2)C18—C17—H17A109.7
C6—C7—H7A120.2C15—C17—H17B109.7
C8—C7—H7A120.2C18—C17—H17B109.7
C7—C8—C3119.76 (18)H17A—C17—H17B108.2
C7—C8—C9122.91 (18)C17—C18—C20109.3 (2)
C3—C8—C9117.32 (16)C17—C18—C19108.9 (2)
N1—C9—C8110.52 (16)C20—C18—C19109.4 (2)
N1—C9—H9A109.5C17—C18—H18A109.7
C8—C9—H9A109.5C20—C18—H18A109.7
N1—C9—H9B109.5C19—C18—H18A109.7
C8—C9—H9B109.5C11—C19—C18109.80 (17)
H9A—C9—H9B108.1C11—C19—H19A109.7
N1—C10—N2114.44 (17)C18—C19—H19A109.7
N1—C10—S1122.50 (14)C11—C19—H19B109.7
N2—C10—S1123.05 (15)C18—C19—H19B109.7
N2—C11—C19111.34 (16)H19A—C19—H19B108.2
N2—C11—C16113.34 (16)C13—C20—C18109.52 (18)
C19—C11—C16110.43 (18)C13—C20—H20A109.8
N2—C11—C12104.80 (16)C18—C20—H20A109.8
C19—C11—C12109.13 (17)C13—C20—H20B109.8
C16—C11—C12107.50 (16)C18—C20—H20B109.8
C11—C12—C13110.23 (17)H20A—C20—H20B108.2
C11—C12—H12A109.6
C10—N1—C1—C2−178.44 (16)C10—N2—C11—C12−179.4 (2)
C9—N1—C1—C2−1.5 (2)N2—C11—C12—C13178.19 (16)
N1—C1—C2—C347.4 (2)C19—C11—C12—C1358.8 (2)
C1—C2—C3—C4131.5 (2)C16—C11—C12—C13−60.9 (2)
C1—C2—C3—C8−48.2 (2)C11—C12—C13—C20−59.5 (2)
C8—C3—C4—C5−2.4 (3)C11—C12—C13—C1461.2 (2)
C2—C3—C4—C5177.96 (19)C20—C13—C14—C1560.7 (2)
C3—C4—C5—C60.2 (3)C12—C13—C14—C15−59.6 (2)
C4—C5—C6—C71.7 (3)C13—C14—C15—C17−60.3 (2)
C5—C6—C7—C8−1.4 (3)C13—C14—C15—C1660.2 (2)
C6—C7—C8—C3−0.8 (3)N2—C11—C16—C15175.54 (16)
C6—C7—C8—C9−179.65 (18)C19—C11—C16—C15−58.8 (2)
C4—C3—C8—C72.7 (3)C12—C11—C16—C1560.2 (2)
C2—C3—C8—C7−177.63 (17)C17—C15—C16—C1159.4 (2)
C4—C3—C8—C9−178.40 (17)C14—C15—C16—C11−61.2 (2)
C2—C3—C8—C91.2 (3)C14—C15—C17—C1860.0 (2)
C10—N1—C9—C8133.07 (17)C16—C15—C17—C18−61.1 (2)
C1—N1—C9—C8−43.8 (2)C15—C17—C18—C20−58.9 (3)
C7—C8—C9—N1−136.37 (18)C15—C17—C18—C1960.6 (2)
C3—C8—C9—N144.8 (2)N2—C11—C19—C18−174.24 (19)
C1—N1—C10—N2−0.3 (3)C16—C11—C19—C1858.9 (2)
C9—N1—C10—N2−177.09 (16)C12—C11—C19—C18−59.0 (2)
C1—N1—C10—S1−179.06 (14)C17—C18—C19—C11−59.3 (3)
C9—N1—C10—S14.2 (2)C20—C18—C19—C1160.2 (3)
C11—N2—C10—N1169.16 (18)C14—C13—C20—C18−60.1 (3)
C11—N2—C10—S1−12.1 (3)C12—C13—C20—C1860.0 (3)
C10—N2—C11—C19−61.5 (3)C17—C18—C20—C1358.8 (3)
C10—N2—C11—C1663.7 (3)C19—C18—C20—C13−60.4 (3)
D—H···AD—HH···AD···AD—H···A
C16—H16B···S10.972.723.365 (2)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C16—H16B⋯S10.972.723.365 (2)125
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-(Adamantan-1-yl)-4-ethyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Ali A El-Emam; Nasser R El-Brollosy; Hazem A Ghabbour; Ching Kheng Quah; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-13

3.  Ethyl 4-{[3-(adamantan-1-yl)-4-phenyl-5-sulfanyl-idene-4,5-dihydro-1H-1,2,4-triazol-1-yl]meth-yl}piperazine-1-carboxyl-ate.

Authors:  Ebtehal S Al-Abdullah; Hanadi H Asiri; Ali A El-Emam; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-31

4.  5-(Adamantan-1-yl)-N-methyl-1,3,4-thia-diazol-2-amine.

Authors:  Abdul-Malek S Al-Tamimi; Ahmed M Alafeefy; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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