Literature DB >> 22320121

Incorporation of heterocycles into the backbone of peptoids to generate diverse peptoid-inspired one bead one compound libraries.

Animesh Aditya1, Thomas Kodadek.   

Abstract

Combinatorial libraries of peptoids (oligo-N-substituted glycines) have proven to be useful sources of protein ligands. Each unit of the peptoid oligomer is derived from 2-haloacetic acid and a primary amine. To increase the chemical diversity available in peptoid libraries, we demonstrate here that heterocyclic halomethyl carboxylic acids can be employed as backbone building blocks in the synthesis of peptoid-based oligomers. Optimized conditions are reported that allow the creation of large, high quality combinatorial libraries containing these units.

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Year:  2012        PMID: 22320121      PMCID: PMC3379557          DOI: 10.1021/co200195t

Source DB:  PubMed          Journal:  ACS Comb Sci        ISSN: 2156-8944            Impact factor:   3.784


  16 in total

1.  Incorporation of unprotected heterocyclic side chains into peptoid oligomers via solid-phase submonomer synthesis.

Authors:  Timothy S Burkoth; Aaron T Fafarman; Deborah H Charych; Michael D Connolly; Ronald N Zuckermann
Journal:  J Am Chem Soc       Date:  2003-07-23       Impact factor: 15.419

2.  A new type of synthetic peptide library for identifying ligand-binding activity.

Authors:  K S Lam; S E Salmon; E M Hersh; V J Hruby; W M Kazmierski; R J Knapp
Journal:  Nature       Date:  1991-11-07       Impact factor: 49.962

3.  Synthesis of N-substituted glycine peptoid libraries.

Authors:  G M Figliozzi; R Goldsmith; S C Ng; S C Banville; R N Zuckermann
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

4.  A simple strategy for the construction of combinatorial cyclic peptoid libraries.

Authors:  Ji Hoon Lee; Amanda M Meyer; Hyun-Suk Lim
Journal:  Chem Commun (Camb)       Date:  2010-10-04       Impact factor: 6.222

5.  Detection of secondary amines on solid phase.

Authors:  T Vojkovsky
Journal:  Pept Res       Date:  1995 Jul-Aug

6.  Synthesis of thiazole, imidazole and oxazole containing amino acids for peptide backbone modification.

Authors:  I G Stankova; G I Videnov; E V Golovinsky; G Jung
Journal:  J Pept Sci       Date:  1999-09       Impact factor: 1.905

7.  Peptoids: a modular approach to drug discovery.

Authors:  R J Simon; R S Kania; R N Zuckermann; V D Huebner; D A Jewell; S Banville; S Ng; L Wang; S Rosenberg; C K Marlowe
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

8.  Introduction of a triazole amino acid into a peptoid oligomer induces turn formation in aqueous solution.

Authors:  Jonathan K Pokorski; Lisa M Miller Jenkins; Hanqiao Feng; Stewart R Durell; Yawen Bai; Daniel H Appella
Journal:  Org Lett       Date:  2007-05-17       Impact factor: 6.005

9.  N-3-substituted pyrimidinones as potent, orally active, AT1 selective angiotensin II receptor antagonists.

Authors:  A Salimbeni; R Canevotti; F Paleari; D Poma; S Caliari; F Fici; R Cirillo; A R Renzetti; A Subissi; L Belvisi
Journal:  J Med Chem       Date:  1995-11-24       Impact factor: 7.446

10.  A biomimetic polyketide-inspired approach to small-molecule ligand discovery.

Authors:  Claudio Aquino; Mohosin Sarkar; Michael J Chalmers; Kimberly Mendes; Thomas Kodadek; Glenn C Micalizio
Journal:  Nat Chem       Date:  2011-11-20       Impact factor: 24.427

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  18 in total

1.  Solid-Phase Synthesis of β-Amino Ketones Via DNA-Compatible Organocatalytic Mannich Reactions.

Authors:  Nam Tran-Hoang; Thomas Kodadek
Journal:  ACS Comb Sci       Date:  2018-01-24       Impact factor: 3.784

Review 2.  Chemical tools to monitor and manipulate the adaptive immune system.

Authors:  Thomas Kodadek
Journal:  Chem Biol       Date:  2014-09-18

3.  High affinity binding of conformationally constrained synthetic oligomers to an antigen-specific antibody: Discovery of a diagnostically useful synthetic ligand for murine Type 1 diabetes autoantibodies.

Authors:  Todd M Doran; Yu Gao; Scott Simanski; Patrick McEnaney; Thomas Kodadek
Journal:  Bioorg Med Chem Lett       Date:  2015-05-27       Impact factor: 2.823

4.  Solid phase synthesis of 1,3,4-oxadiazin-5 (6R)-one and 1,3,4-oxadiazol-2-one scaffolds from acyl hydrazides.

Authors:  Bani Kanta Sarma; Xiaodan Liu; Hao Wu; Yu Gao; Thomas Kodadek
Journal:  Org Biomol Chem       Date:  2015-01-07       Impact factor: 3.876

5.  Synthesis of libraries of peptidomimetic compounds containing a 2-oxopiperazine unit in the main chain.

Authors:  Sujit Suwal; Thomas Kodadek
Journal:  Org Biomol Chem       Date:  2013-04-07       Impact factor: 3.876

6.  Bicyclic-Capped Histone Deacetylase 6 Inhibitors with Improved Activity in a Model of Axonal Charcot-Marie-Tooth Disease.

Authors:  Sida Shen; Veronick Benoy; Joel A Bergman; Jay H Kalin; Mariana Frojuello; Giulio Vistoli; Wanda Haeck; Ludo Van Den Bosch; Alan P Kozikowski
Journal:  ACS Chem Neurosci       Date:  2015-12-07       Impact factor: 4.418

7.  Towards vast libraries of scaffold-diverse, conformationally constrained oligomers.

Authors:  Thomas Kodadek; Patrick J McEnaney
Journal:  Chem Commun (Camb)       Date:  2016-03-21       Impact factor: 6.222

Review 8.  Chemical Tools To Monitor and Manipulate Adaptive Immune Responses.

Authors:  Todd M Doran; Mohosin Sarkar; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2016-05-03       Impact factor: 15.419

9.  Decoding split and pool combinatorial libraries with electron-transfer dissociation tandem mass spectrometry.

Authors:  Mohosin Sarkar; Bruce D Pascal; Caitlin Steckler; Claudio Aquino; Glenn C Micalizio; Thomas Kodadek; Michael J Chalmers
Journal:  J Am Soc Mass Spectrom       Date:  2013-05-02       Impact factor: 3.109

10.  High-throughput Identification of DNA-Encoded IgG Ligands that Distinguish Active and Latent Mycobacterium tuberculosis Infections.

Authors:  Kimberly R Mendes; Marie Lynne Malone; John Maina Ndungu; Irena Suponitsky-Kroyter; Valerie J Cavett; Patrick J McEnaney; Andrew B MacConnell; Todd M Doran; Katharina Ronacher; Kim Stanley; Ofelia Utset; Gerhard Walzl; Brian M Paegel; Thomas Kodadek
Journal:  ACS Chem Biol       Date:  2016-12-13       Impact factor: 5.100

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