Literature DB >> 25912526

Three-dimensional reconstruction of helical polymers.

Edward H Egelman1.   

Abstract

The field of three-dimensional electron microscopy began more than 45years ago with a reconstruction of a helical phage tail, and helical polymers continue to be important objects for three-dimensional reconstruction due to the centrality of helical protein and nucleoprotein polymers in all aspects of biology. We are now witnessing a fundamental revolution in this area, made possible by direct electron detectors, which has led to near-atomic resolution for a number of important helical structures. Most importantly, the possibility of achieving such resolution routinely for a vast number of helical samples is within our reach. One of the main problems in helical reconstruction, ambiguities in assigning the helical symmetry, is overcome when one reaches a resolution where secondary structure is clearly visible. However, obstacles still exist due to the intrinsic variability within many helical filaments.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Direct electron detectors; Helical polymers; Variable twist

Mesh:

Substances:

Year:  2015        PMID: 25912526      PMCID: PMC4543434          DOI: 10.1016/j.abb.2015.04.004

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  81 in total

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4.  Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5.

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5.  An electron-density map of tobacco mosaic virus at 10 Angstrom resolution.

Authors:  A N Barrett; J B Leigh; K C Holmes; R Leberman; E Mandelkow; P von Sengbusch
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6.  Consensus structure of Pf1 filamentous bacteriophage from X-ray fibre diffraction and solid-state NMR.

Authors:  S K Straus; W R P Scott; C D Schwieters; D A Marvin
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7.  Hydrogen-bonding networks and RNA bases revealed by cryo electron microscopy suggest a triggering mechanism for calcium switches.

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-17       Impact factor: 11.205

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Authors:  H Wang; G Stubbs
Journal:  J Mol Biol       Date:  1994-06-10       Impact factor: 5.469

Review 9.  Single-particle reconstruction from EM images of helical filaments.

Authors:  Edward H Egelman
Journal:  Curr Opin Struct Biol       Date:  2007-09-11       Impact factor: 6.809

10.  Ambiguities in helical reconstruction.

Authors:  Edward H Egelman
Journal:  Elife       Date:  2014-12-08       Impact factor: 8.140

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  11 in total

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Authors:  Spencer A Hughes; Fengbin Wang; Shengyuan Wang; Mark A B Kreutzberger; Tomasz Osinski; Albina Orlova; Joseph S Wall; Xiaobing Zuo; Edward H Egelman; Vincent P Conticello
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3.  Deducing the symmetry of helical assemblies: Applications to membrane proteins.

Authors:  Nicolas Coudray; Ralph Lasala; Zhening Zhang; Kathy M Clark; Mark E Dumont; David L Stokes
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Review 4.  Type IV pili: dynamics, biophysics and functional consequences.

Authors:  Lisa Craig; Katrina T Forest; Berenike Maier
Journal:  Nat Rev Microbiol       Date:  2019-07       Impact factor: 60.633

5.  Python-based Helix Indexer: A graphical user interface program for finding symmetry of helical assembly through Fourier-Bessel indexing of electron microscopic data.

Authors:  Xuewu Zhang
Journal:  Protein Sci       Date:  2021-09-22       Impact factor: 6.725

6.  Structural basis of cooperativity in kinesin revealed by 3D reconstruction of a two-head-bound state on microtubules.

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7.  Cryo-EM is a powerful tool, but helical applications can have pitfalls.

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8.  An introduction to sample preparation and imaging by cryo-electron microscopy for structural biology.

Authors:  Rebecca F Thompson; Matt Walker; C Alistair Siebert; Stephen P Muench; Neil A Ranson
Journal:  Methods       Date:  2016-02-28       Impact factor: 3.608

9.  CryoEM at IUCrJ: a new era.

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10.  EMDataBank unified data resource for 3DEM.

Authors:  Catherine L Lawson; Ardan Patwardhan; Matthew L Baker; Corey Hryc; Eduardo Sanz Garcia; Brian P Hudson; Ingvar Lagerstedt; Steven J Ludtke; Grigore Pintilie; Raul Sala; John D Westbrook; Helen M Berman; Gerard J Kleywegt; Wah Chiu
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

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